EWM22641.1, cds8001 (CDS) Nannochloropsis gaditana

Overview
NameEWM22641.1
Unique Namecds8001
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:378344..379354 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22641.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100023g10.3957.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:378344..379354 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM22641.1 vs. NCBI_GenBank
Match: gi|585103206|gb|EWM22641.1| (hypothetical protein Naga_100023g10 [Nannochloropsis gaditana])

HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0 
Query:    1 MLSIYGLKNLKYISPGMSDMILYVASVAAMLAFLPMYYALKLHLSLTPAAVQYDALHNLALSARASTSPGDPLSFIESLSERQSVTRCEWEVMLSSQCRITAKESLASSGISKANEKYTLSQRLSLDAYEFAVTADFNDIEGTLERWRRVVAMRQNRILVPGRTAQIYSQLISVFLRADEFDFLRQVLQYVGLTPDIYLPRGQLFDLEKLSCRVAKGMLDIDLEQWQWEEHGRALGAPEPLSPREKGENIAEWLWKQVPPVGGRFELEFMVRDMILSLLRVGFREARERGLSSVVIKLPLPSKPSSPYFQIHIPRSSLELLRDFDAVSIGLDVNLK 336
            MLSIYGLKNLKYISPGMSDMILYVASVAAMLAFLPMYYALKLHLSLTPAAVQYDALHNLALSARASTSPGDPLSFIESLSERQSVTRCEWEVMLSSQCRITAKESLASSGISKANEKYTLSQRLSLDAYEFAVTADFNDIEGTLERWRRVVAMRQNRILVPGRTAQIYSQLISVFLRADEFDFLRQVLQYVGLTPDIYLPRGQLFDLEKLSCRVAKGMLDIDLEQWQWEEHGRALGAPEPLSPREKGENIAEWLWKQVPPVGGRFELEFMVRDMILSLLRVGFREARERGLSSVVIKLPLPSKPSSPYFQIHIPRSSLELLRDFDAVSIGLDVNLK
Sbjct:    1 MLSIYGLKNLKYISPGMSDMILYVASVAAMLAFLPMYYALKLHLSLTPAAVQYDALHNLALSARASTSPGDPLSFIESLSERQSVTRCEWEVMLSSQCRITAKESLASSGISKANEKYTLSQRLSLDAYEFAVTADFNDIEGTLERWRRVVAMRQNRILVPGRTAQIYSQLISVFLRADEFDFLRQVLQYVGLTPDIYLPRGQLFDLEKLSCRVAKGMLDIDLEQWQWEEHGRALGAPEPLSPREKGENIAEWLWKQVPPVGGRFELEFMVRDMILSLLRVGFREARERGLSSVVIKLPLPSKPSSPYFQIHIPRSSLELLRDFDAVSIGLDVNLK 336
[Close]
BLAST of EWM22641.1 vs. NCBI_GenBank
Match: gi|873240438|emb|CEL93411.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 79.7221 bits (195), Expect = 3.409e-13
Identity = 59/200 (29.50%), Postives = 96/200 (48.00%), Query Frame = 0 
Query:  107 ASSGISKANEKYTL-----SQRLSLDAYEFAVTADFN-----DIEGTLERWRRVVAMRQNRILVPGRTAQIYSQLISVFLRADEFDFLRQVLQYVGLTPDIY--LP---------RGQLFDLEKLSCRVAKGMLDIDLEQWQWEEHGRALGAPEPLSPREKGENIAEWLWKQVP-PVGGRFELEFMVRDMILSLLRVGFR 284
             SS ++ A E  +L     +  +  D Y +    D +     D +  L  +R+ +A+R NR+L P R+A IY+  IS  +R          + YVG+ P  +  +P           ++ DL +L+  VA  MLD+DL + QWE+        EPL PR++G+  +EW +KQV  P+          +DM L++ R+  R
Sbjct:   40 GSSSVADALEDGSLLRDVAAMGVCTDCYTYKSCEDASRPSAGDWQRQLHVFRKNIALRTNRVLDPSRSAHIYTDFISACIRGRARRVALAAIAYVGIPPARFNAMPADSHAAQTSSSRVLDLGQLATYVAGTMLDLDLARLQWEQQEGEKEGEEPLQPRQRGDATSEWFYKQVEQPLRA-----LRAQDMTLAVFRLALR 234
The following BLAST results are available for this feature:
BLAST of EWM22641.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103206|gb|EWM22641.1|0.000e+0100.00hypothetical protein Naga_100023g10 [Nannochlorops... [more]
gi|873240438|emb|CEL93411.1|3.409e-1329.50unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8023rna8023Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications