EWM29869.1, cds800 (CDS) Nannochloropsis gaditana

Overview
NameEWM29869.1
Unique Namecds800
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:448228..448355 +
Alignment locationCM002456.1:448414..448763 +
Alignment locationCM002456.1:448911..449089 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29869.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100106g14.1443.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:448228..448355 +
CM002456.1supercontigCM002456.1:448414..448763 +
CM002456.1supercontigCM002456.1:448911..449089 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29869.1 vs. NCBI_GenBank
Match: gi|585112451|gb|EWM29869.1| (hypothetical protein Naga_100106g14 [Nannochloropsis gaditana])

HSP 1 Score: 449.514 bits (1155), Expect = 7.534e-160
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0 
Query:    1 MWIEYKRDSADQQKVIPLAAFRAWPAISLFFLTPLKRLGGRGRAAYRCLPCLRRLGTPPRPARRSRAWPRWKGSPAFTHSLLSTTAWHDMESVSQYQIRSRWAGGDTPPHFSHYAIAPSPPPSISSFTLTKPRVCACTHQHKVLLCIQYPCPGQARICTRKVKSHKAMVASAIIISIHNFQTRTNARSKSIKDACWLCAFMRLEDAEMTRQRDIKYSM 218
            MWIEYKRDSADQQKVIPLAAFRAWPAISLFFLTPLKRLGGRGRAAYRCLPCLRRLGTPPRPARRSRAWPRWKGSPAFTHSLLSTTAWHDMESVSQYQIRSRWAGGDTPPHFSHYAIAPSPPPSISSFTLTKPRVCACTHQHKVLLCIQYPCPGQARICTRKVKSHKAMVASAIIISIHNFQTRTNARSKSIKDACWLCAFMRLEDAEMTRQRDIKYSM
Sbjct:    1 MWIEYKRDSADQQKVIPLAAFRAWPAISLFFLTPLKRLGGRGRAAYRCLPCLRRLGTPPRPARRSRAWPRWKGSPAFTHSLLSTTAWHDMESVSQYQIRSRWAGGDTPPHFSHYAIAPSPPPSISSFTLTKPRVCACTHQHKVLLCIQYPCPGQARICTRKVKSHKAMVASAIIISIHNFQTRTNARSKSIKDACWLCAFMRLEDAEMTRQRDIKYSM 218
The following BLAST results are available for this feature:
BLAST of EWM29869.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112451|gb|EWM29869.1|7.534e-160100.00hypothetical protein Naga_100106g14 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna800rna800Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications