EWM22693.1, cds7974 (CDS) Nannochloropsis gaditana

Overview
NameEWM22693.1
Unique Namecds7974
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:314775..316243 -
Alignment locationKK037247.1:314420..314619 -
Alignment locationKK037247.1:314060..314088 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22693.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100340g8.5989.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:314775..316243 -
KK037247.1supercontigKK037247.1:314420..314619 -
KK037247.1supercontigKK037247.1:314060..314088 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM22693.1 vs. NCBI_GenBank
Match: gi|585103261|gb|EWM22693.1| (hypothetical protein Naga_100340g8 [Nannochloropsis gaditana])

HSP 1 Score: 1127.08 bits (2914), Expect = 0.000e+0
Identity = 565/565 (100.00%), Postives = 565/565 (100.00%), Query Frame = 0
Query:    1 MACSSTSSTPRLSSSTFVTPFDSSSRVEGVGRSHQSTELLARRVSGVRIDLSPPSPPISSSTRPGDGMSPLLSNAQSFQNQLHRHSRQSSTCSGNDTLSASSSSTSSSSSPFPALLKAFNPQEVQVEVECEPAAIGDRVLLRSIIIHNMSKLDLDDSLTLTAEPNDLCFLERVLVGSLARGQRKVVPLQLRVRSSLTMPYEDAIPERYVLTLSHASPSSLPPSSASSPPPDLEIRYSFENSFRYFLKGLPGLAPRRVVSLPCPSPPSRPPSSPPARRRLPAPCNLVLVGPAGAGKSTLLAHLLTLVSEREHVNLGGVRTCATSSHGTLELRAYPLHPTVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESHPEGAREEGPGQEAVPLRSLFGVSHAWPAFLEAEDSAPDALQPYMRGGVL 565
            MACSSTSSTPRLSSSTFVTPFDSSSRVEGVGRSHQSTELLARRVSGVRIDLSPPSPPISSSTRPGDGMSPLLSNAQSFQNQLHRHSRQSSTCSGNDTLSASSSSTSSSSSPFPALLKAFNPQEVQVEVECEPAAIGDRVLLRSIIIHNMSKLDLDDSLTLTAEPNDLCFLERVLVGSLARGQRKVVPLQLRVRSSLTMPYEDAIPERYVLTLSHASPSSLPPSSASSPPPDLEIRYSFENSFRYFLKGLPGLAPRRVVSLPCPSPPSRPPSSPPARRRLPAPCNLVLVGPAGAGKSTLLAHLLTLVSEREHVNLGGVRTCATSSHGTLELRAYPLHPTVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESHPEGAREEGPGQEAVPLRSLFGVSHAWPAFLEAEDSAPDALQPYMRGGVL
Sbjct:    1 MACSSTSSTPRLSSSTFVTPFDSSSRVEGVGRSHQSTELLARRVSGVRIDLSPPSPPISSSTRPGDGMSPLLSNAQSFQNQLHRHSRQSSTCSGNDTLSASSSSTSSSSSPFPALLKAFNPQEVQVEVECEPAAIGDRVLLRSIIIHNMSKLDLDDSLTLTAEPNDLCFLERVLVGSLARGQRKVVPLQLRVRSSLTMPYEDAIPERYVLTLSHASPSSLPPSSASSPPPDLEIRYSFENSFRYFLKGLPGLAPRRVVSLPCPSPPSRPPSSPPARRRLPAPCNLVLVGPAGAGKSTLLAHLLTLVSEREHVNLGGVRTCATSSHGTLELRAYPLHPTVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESHPEGAREEGPGQEAVPLRSLFGVSHAWPAFLEAEDSAPDALQPYMRGGVL 565          
BLAST of EWM22693.1 vs. NCBI_GenBank
Match: gi|553185963|ref|XP_005854338.1| (hypothetical protein NGA_0186400, partial [Nannochloropsis gaditana CCMP526] >gi|422294722|gb|EKU22022.1| hypothetical protein NGA_0186400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1105.51 bits (2858), Expect = 0.000e+0
Identity = 558/563 (99.11%), Postives = 559/563 (99.29%), Query Frame = 0
Query:    1 MACSSTSSTPRLSSSTFVTPFDSSSRVEGVGRSHQSTELLARRVSGVRIDLSPPSPPISSSTRPGDGMSPLLSNAQSFQNQLHRHSRQSSTCSGNDTLSASSSSTSSSSSPFPALLKAFNPQEVQVEVECEPAAIGDRVLLRSIIIHNMSKLDLDDSLTLTAEPNDLCFLERVLVGSLARGQRKVVPLQLRVRSSLTMPYEDAIPERYVLTLSHASPSSLPPSSASSPPPDLEIRYSFENSFRYFLKGLPGLAPRRVVSLPCPSPPSRPPSSPPARRRLPAPCNLVLVGPAGAGKSTLLAHLLTLVSEREHVNLGGVRTCATSSHGTLELRAYPLHPTVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESHPEGAREEGPGQEAVPLRSLFGVSHAWPAFLEAEDSAPDALQPYMRGG 563
            MACSSTSSTPRLSSSTFVTPFDSSSRVEGVGRSHQSTELLARRVSGVRIDLSPPSPPISSSTRPGDGMSPLLSNAQSFQNQLHRHSRQSSTCSGNDTLSASSSSTSSSSSPFPALLKAFNPQEVQVEVECEPAAIGDRVLLRSIIIHNMSKLDLDDSLTLTAEPNDLCFLERVLVGSLARGQRKVVPLQLRVRSSLTMPYEDAIPERYVLTLSHASPSSLPPSSASSPPPDLEIRYSFENSFRYFLKGLPGLAPRRVVSLPCPSPPSRPPSSPPARRRLPAPCNLVLVGPAGAGKSTLLAHLLTLVSEREHVNLGGVRTCATSSHGTLELRAYPLHPTVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESHPEGAREEGPGQEAVPLRSLFGVSHAWPAFLEAEDSAPDAL+   R G
Sbjct:   43 MACSSTSSTPRLSSSTFVTPFDSSSRVEGVGRSHQSTELLARRVSGVRIDLSPPSPPISSSTRPGDGMSPLLSNAQSFQNQLHRHSRQSSTCSGNDTLSASSSSTSSSSSPFPALLKAFNPQEVQVEVECEPAAIGDRVLLRSIIIHNMSKLDLDDSLTLTAEPNDLCFLERVLVGSLARGQRKVVPLQLRVRSSLTMPYEDAIPERYVLTLSHASPSSLPPSSASSPPPDLEIRYSFENSFRYFLKGLPGLAPRRVVSLPCPSPPSRPPSSPPARRRLPAPCNLVLVGPAGAGKSTLLAHLLTLVSEREHVNLGGVRTCATSSHGTLELRAYPLHPTVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESHPEGAREEGPGQEAVPLRSLFGVSHAWPAFLEAEDSAPDALREEPREG 605          
BLAST of EWM22693.1 vs. NCBI_GenBank
Match: gi|470524214|ref|XP_004356453.1| (hypothetical protein ACA1_171260 [Acanthamoeba castellanii str. Neff] >gi|440803670|gb|ELR24553.1| hypothetical protein ACA1_171260 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 102.064 bits (253), Expect = 5.226e-20
Identity = 79/247 (31.98%), Postives = 122/247 (49.39%), Query Frame = 0
Query:  269 PPSSPPARRRLPAPCNLVLVGPAGAGKSTLLAHLLTLVSE-REHVNLGGVRTCATSSHGTLELRAYPLHPTVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDA--GREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQ-RAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAE 511
            PP+   A+ ++       L G AGAGKS  +  +LTL S     V   GV  CA   H T +L  Y +     A+   DT G T +TY  ++L N++ G +P R W   G D    + A+   +  +TR  R     + ++    L    E + ++     +Q +A  NPLVL++ VD   P+ R++P G    E+   +++    LG+  NRV  +V YKDE  R F IDR  Y+++  AL+ A+E
Sbjct:  111 PPTGAVAKYKV------CLFGLAGAGKSAFVNAVLTLASSGMSVVETAGVGGCA--RHNTRQLATYTIDGENFALV--DTWGLTLTTYLNDDLENVVDGVFP-RNW---GMDMIYDQHAKAIRDNASTRPERAVHVILFMITHSALDKNDECELIKANYARLQDKAARNPLVLISKVDEIVPAFRSNPLG-DYPEVRALKQKVTDLLGIPENRVYAVVNYKDESERSFQIDRNTYRIVEHALRTASE 342          
BLAST of EWM22693.1 vs. NCBI_GenBank
Match: gi|551584663|ref|XP_005777694.1| (hypothetical protein EMIHUDRAFT_237890 [Emiliania huxleyi CCMP1516] >gi|485629971|gb|EOD25265.1| hypothetical protein EMIHUDRAFT_237890 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 82.8037 bits (203), Expect = 5.531e-13
Identity = 76/245 (31.02%), Postives = 110/245 (44.90%), Query Frame = 0
Query:  284 NLVLVGPAGAGKSTLLAHLLTLVSEREHVNLGGVRTCATSSHG-----TLELRAYPLHPTVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRW------DPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQ--SAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVES 515
            N+++ G  G+GK++    +L L+S   H N G    CA   HG     T+ LRA    P    + VWDT+G TP  Y   EL  I+ G  P   W      DP      ++  V     A R  R   A V +LP   L       + ++R Q   + R G+NP+VL+  +D A  ++R +PS         A + AA  LG+    V   + Y D  ++ F IDR +  VL + L +A    ES
Sbjct:  129 NVLVFGVMGSGKTSFTNSILALMS---HANSGEALPCAEPVHGGGDHCTVTLRAIDF-PNELPLRVWDTKGLTPENYKGPELEAIMKGKLP-HGWDMDCHIDPAMLSESQDLTVE----AKRFGRTPHAVVFMLPFSELDDTDGEFMQKIRDQFGKIVRLGINPIVLVAKLDEADDAVRKNPSSSN-STKDAALKAAADFLGIPFGNVYPCINYLDLTSKSFEIDRNLAVVLHRILSMAKHRCES 363          
BLAST of EWM22693.1 vs. NCBI_GenBank
Match: gi|470374762|ref|XP_004333127.1| (von Willebrand factor type A domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440789822|gb|ELR11114.1| von Willebrand factor type A domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 68.5514 bits (166), Expect = 2.085e-8
Identity = 64/256 (25.00%), Postives = 115/256 (44.92%), Query Frame = 0
Query:  268 RPPSSPPARRRLPAPC-NLVLVGPAGAGKSTLLAHLLTLVSER--EHVNLGGVRTCATSSHGTLELRAYPLHP----TVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESH 516
            RPPS        PA C N+++ G  G+GKS+    +L+  S++  ++  +GG        H T + R + L      T + +++WD+ G    TY  + L  +L GD P   ++ V       A+ R+     +  R     ++ +P  IL+ +V L +++  L L  +  LN  V++T         RAD    G       +   A++L +   RV  +  Y     + F ID++  +V A  +  A +YV+++
Sbjct:  357 RPPS--------PATCLNILMFGVIGSGKSSFTNTILSAFSDQVMDNAQVGG-----DGDHCTTDYRRFHLGQLCGLTGTEIALWDSWGLDEETYGNDFLMTLLRGDLPS-GYEMVNVSIVDGAK-RDPDNMHQVDRRIHGVLMFVPINILEDSVMLLRIKDALRLTNKMKLNAQVVVT---------RADTVS-GKQNRVTLQERIAKELNLAPLRVNLVKNYIKVRDKDFGIDKVALRVFADIVDTAHQYVKTY 587          
BLAST of EWM22693.1 vs. NCBI_GenBank
Match: gi|1101521941|ref|XP_018926559.1| (PREDICTED: interferon-induced protein 44-like [Cyprinus carpio])

HSP 1 Score: 64.6994 bits (156), Expect = 1.354e-7
Identity = 59/247 (23.89%), Postives = 113/247 (45.75%), Query Frame = 0
Query:  285 LVLVGPAGAGKSTLLAHLLTLVSEREHVNLGGVRTCATSSHG----TLELRAYPLHPTVSA----VSVWDTRGFTPST---YTCEELANILAGDYPER-RWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRA----GLNPLVLLTHVDLAYPSLRADPSGRGVGELGEAR-REAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVE 514
            ++++GP GAGKS+    +         + +G + + A S       T + R YP+            + DT G    T      E++++IL G  P+R +++P+     +E    ++     +L+E+  CVV + +    S +  D+L+ +L  ++R     G+  +VL+T +D A P +  D     V    +++ +E +  LGV  + VL +  Y  E     + D L+   L + L  A +Y++
Sbjct:   96 ILMIGPVGAGKSSFFNSI-------NSIFMGRITSKAMSGSAGTSLTTQFRTYPVKDGREGKPLPFVLCDTMGLEEQTGAGLDIEDISSILQGHIPDRYKFNPITPSQPKE----QKASRPASLKEKIHCVVYMIDTTKISLMS-DKLQEKLTTIRRKVNSLGITQMVLMTKIDEACPEVEKDLQSLYVSSYIKSKVQEVSSWLGVPVSCVLPVKNYSQELELELNCDVLLLTALQQMLNFADDYLD 330          
The following BLAST results are available for this feature:
BLAST of EWM22693.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585103261|gb|EWM22693.1|0.000e+0100.00hypothetical protein Naga_100340g8 [Nannochloropsi... [more]
gi|553185963|ref|XP_005854338.1|0.000e+099.11hypothetical protein NGA_0186400, partial [Nannoch... [more]
gi|470524214|ref|XP_004356453.1|5.226e-2031.98hypothetical protein ACA1_171260 [Acanthamoeba cas... [more]
gi|551584663|ref|XP_005777694.1|5.531e-1331.02hypothetical protein EMIHUDRAFT_237890 [Emiliania ... [more]
gi|470374762|ref|XP_004333127.1|2.085e-825.00von Willebrand factor type A domain containing pro... [more]
gi|1101521941|ref|XP_018926559.1|1.354e-723.89PREDICTED: interferon-induced protein 44-like [Cyp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7996rna7996Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications