EWM22706.1, cds7967 (CDS) Nannochloropsis gaditana

Overview
NameEWM22706.1
Unique Namecds7967
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:296453..296563 -
Alignment locationKK037247.1:296324..296366 -
Alignment locationKK037247.1:295904..296085 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22706.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102248g1.7138.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:296453..296563 -
KK037247.1supercontigKK037247.1:296324..296366 -
KK037247.1supercontigKK037247.1:295904..296085 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22706.1 vs. NCBI_GenBank
Match: gi|585103280|gb|EWM22706.1| (hypothetical protein Naga_102248g1 [Nannochloropsis gaditana])

HSP 1 Score: 221.476 bits (563), Expect = 3.381e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query:    1 MVVTSDFYVAITGRDTSLYLHTLWLSLLIVLAVVVCKTFKTLSVELLALQCHRPTLPGTSSETSLPPSLPPSAPVDNPDQRLTSDLEIFGAKLAELIGQTLAVPALVLYCE 111
            MVVTSDFYVAITGRDTSLYLHTLWLSLLIVLAVVVCKTFKTLSVELLALQCHRPTLPGTSSETSLPPSLPPSAPVDNPDQRLTSDLEIFGAKLAELIGQTLAVPALVLYCE
Sbjct:    1 MVVTSDFYVAITGRDTSLYLHTLWLSLLIVLAVVVCKTFKTLSVELLALQCHRPTLPGTSSETSLPPSLPPSAPVDNPDQRLTSDLEIFGAKLAELIGQTLAVPALVLYCE 111          
BLAST of EWM22706.1 vs. NCBI_GenBank
Match: gi|971509793|dbj|GAQ88416.1| (ABC transporter D family member 4 [Klebsormidium nitens])

HSP 1 Score: 58.151 bits (139), Expect = 1.368e-7
Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = 0
Query:    7 FYVAITGRDTSLYLHTLWLSLLIVLAVVVCKTFKTLSVELLALQCH-RPTLPGTSS--ETSLPPSLPPSAPVDNPDQRLTSDLEIFGAKLAELIGQTLAVPALVLY 109
            FY A+   D  L+   +W SLL   +  +C   K    E+LALQ   R TL   S     S    L     VDNPDQR+  ++++F   LA+L+ +T+  P ++ Y
Sbjct:   97 FYKALLDNDVKLFASAMWRSLLWYSSAALCAGVKLGVSEMLALQWRKRLTLAAHSRYCRDSNVFHLMKEGAVDNPDQRVAQEIQLFSTGLAQLLHKTVVAPLMIAY 202          
BLAST of EWM22706.1 vs. NCBI_GenBank
Match: gi|1178053898|gb|ORE09380.1| (P-loop containing nucleoside triphosphate hydrolase protein [Rhizopus microsporus var. microsporus])

HSP 1 Score: 58.151 bits (139), Expect = 1.557e-7
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 0
Query:    2 VVTSDFYVAITGRDTSLYLHTLWLSLLIVLAVVVCKTFKTLSVELLALQCHR---PTLPGTSSETSLPPSLPPSAPVDNPDQRLTSDLEIFGAKLAELIGQTLAVPALVLY 109
            ++ S+FY  +T RD + ++  +   LL+V AV  CK+      EL A++  R     L     ++ +  +L  +  VDNPDQR+T D++ F   L ++I   +  P + +Y
Sbjct:   88 LIPSNFYTILTSRDLAGFIRYIPTCLLLVFAVATCKSLLKFMGELFAIKTRRLLTVHLQHRYIKSKMVYNLLMNQYVDNPDQRITQDVDKFAETLQQIITNLIIAPLMAIY 198          
BLAST of EWM22706.1 vs. NCBI_GenBank
Match: gi|727140871|emb|CEG76689.1| (hypothetical protein RMATCC62417_11549 [Rhizopus microsporus])

HSP 1 Score: 57.7658 bits (138), Expect = 1.809e-7
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 0
Query:    2 VVTSDFYVAITGRDTSLYLHTLWLSLLIVLAVVVCKTFKTLSVELLALQCHR---PTLPGTSSETSLPPSLPPSAPVDNPDQRLTSDLEIFGAKLAELIGQTLAVPALVLY 109
            ++ S+FY  +T RD + ++  +   LL+V AV  CK+      EL A++  R     L     ++ +  +L  +  VDNPDQR+T D++ F   L ++I   +  P + +Y
Sbjct:   88 LIPSNFYTILTSRDLAGFIRYIPTCLLLVFAVATCKSLLKFMGELFAIKTRRLLTVHLQHRYIKSKMVYNLLMNQYVDNPDQRITQDVDKFAETLQQIITNLIIAPLMAIY 198          
BLAST of EWM22706.1 vs. NCBI_GenBank
Match: gi|729708054|emb|CEI95473.1| (hypothetical protein RMCBS344292_09658 [Rhizopus microsporus])

HSP 1 Score: 57.7658 bits (138), Expect = 2.119e-7
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 0
Query:    2 VVTSDFYVAITGRDTSLYLHTLWLSLLIVLAVVVCKTFKTLSVELLALQCHR---PTLPGTSSETSLPPSLPPSAPVDNPDQRLTSDLEIFGAKLAELIGQTLAVPALVLY 109
            ++ S+FY  +T RD + ++  +   LL+V AV  CK+      EL A++  R     L     ++ +  +L  +  VDNPDQR+T D++ F   L ++I   +  P + +Y
Sbjct:  104 LIPSNFYTILTSRDLAGFIRYIPTCLLLVFAVATCKSLLKFMGELFAIKTRRLLTVHLQHRYIKSKMVYNLLMNQYVDNPDQRITQDVDKFAETLQQIITNLIIAPLMAIY 214          
BLAST of EWM22706.1 vs. NCBI_GenBank
Match: gi|727142877|emb|CEG74771.1| (hypothetical protein RMATCC62417_09926 [Rhizopus microsporus])

HSP 1 Score: 57.7658 bits (138), Expect = 2.119e-7
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 0
Query:    2 VVTSDFYVAITGRDTSLYLHTLWLSLLIVLAVVVCKTFKTLSVELLALQCHR---PTLPGTSSETSLPPSLPPSAPVDNPDQRLTSDLEIFGAKLAELIGQTLAVPALVLY 109
            ++ S+FY  +T RD + ++  +   LL+V AV  CK+      EL A++  R     L     ++ +  +L  +  VDNPDQR+T D++ F   L ++I   +  P + +Y
Sbjct:  104 LIPSNFYTILTSRDLAGFIRYIPTCLLLVFAVATCKSLLKFMGELFAIKTRRLLTVHLQHRYIKSKMVYNLLMNQYVDNPDQRITQDVDKFAETLQQIITNLIIAPLMAIY 214          
BLAST of EWM22706.1 vs. NCBI_GenBank
Match: gi|1178068333|gb|ORE22726.1| (P-loop containing nucleoside triphosphate hydrolase protein [Rhizopus microsporus])

HSP 1 Score: 57.7658 bits (138), Expect = 2.204e-7
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 0
Query:    2 VVTSDFYVAITGRDTSLYLHTLWLSLLIVLAVVVCKTFKTLSVELLALQCHR---PTLPGTSSETSLPPSLPPSAPVDNPDQRLTSDLEIFGAKLAELIGQTLAVPALVLY 109
            ++ S+FY  +T RD + ++  +   LL+V AV  CK+      EL A++  R     L     ++ +  +L  +  VDNPDQR+T D++ F   L ++I   +  P + +Y
Sbjct:   88 LIPSNFYTILTSRDLAGFIRYIPTCLLLVFAVAACKSLLKFMGELFAIKTRRLLTVHLQHRYIKSKMVYNLLMNQYVDNPDQRITQDVDKFAETLQQIITNLIIAPLMAIY 198          
The following BLAST results are available for this feature:
BLAST of EWM22706.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585103280|gb|EWM22706.1|3.381e-73100.00hypothetical protein Naga_102248g1 [Nannochloropsi... [more]
gi|971509793|dbj|GAQ88416.1|1.368e-733.96ABC transporter D family member 4 [Klebsormidium n... [more]
gi|1178053898|gb|ORE09380.1|1.557e-729.73P-loop containing nucleoside triphosphate hydrolas... [more]
gi|727140871|emb|CEG76689.1|1.809e-729.73hypothetical protein RMATCC62417_11549 [Rhizopus m... [more]
gi|729708054|emb|CEI95473.1|2.119e-729.73hypothetical protein RMCBS344292_09658 [Rhizopus m... [more]
gi|727142877|emb|CEG74771.1|2.119e-729.73hypothetical protein RMATCC62417_09926 [Rhizopus m... [more]
gi|1178068333|gb|ORE22726.1|2.204e-729.73P-loop containing nucleoside triphosphate hydrolas... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7989rna7989Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications