EWM22713.1, cds7961 (CDS) Nannochloropsis gaditana

Overview
NameEWM22713.1
Unique Namecds7961
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:283072..283590 -
Alignment locationKK037247.1:281567..282934 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22713.1
ProductPeptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
Orig transcript idgnl|cribi|Naga_100639g2.5887.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:283072..283590 -
KK037247.1supercontigKK037247.1:281567..282934 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR028889USP_dom
IPR018200USP_CS
IPR001394Peptidase_C19_UCH
Homology
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BLAST of EWM22713.1 vs. NCBI_GenBank
Match: gi|585103290|gb|EWM22713.1| (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 1272.3 bits (3291), Expect = 0.000e+0
Identity = 628/628 (100.00%), Postives = 628/628 (100.00%), Query Frame = 0 
Query:    1 MVPCPDGDRPRTIASKCTHTILQFMLMQEQARGQGINSRCPRPPYLSGPTPCLFNLPPLAPPMPPVPPASPPALRPPSPLSLARIDQEQYHSATIASVPPEIAARIARSEARAERSKRRGSRGVELPENDVRRQIGCRLMNLGNSCYQNCILQILVNLPDVRQRLVEFAAGHTACEEDYCFPRDLSRHAVDVPVAAAKGQALSASWVLKYQQAGEGVIGDLYRQSDPACFLHGAADWCVDRAAGPAHALPLFHDLFEGAAFEHEWVDPASFPRCPVQPKNLHSQPFLMLNIPVPASPSSVMACLRASVFEDKVVTGRECEEEGCPYGRPAARSPPSMRKEREEAGREESAGGRGRRTPPPVKGGRGGGAGEGSATTPMRRSSPAPPSPRPPLSPRCSPSPPARHDKHQQLRLAHLPRYVCLRLLRFDNSLKKIRTPVAYEETIDFGHFVSREQEAGTTKREGGAEAHGGAGVGGKRKRRESVKGEGERVVLSLNAEGGEAAGGQGLKGEEQGVRGPSEYELMSVVLHQGRTRQRGHYYLYQRVLEGVEGGGESGKWWLFDDAKRYQEVEACRVLRASDEVYMLVYRRRDRAEKGGRGRGRGKGKGRSSSKGMEKTSSERKKGRHRYEY 628
            MVPCPDGDRPRTIASKCTHTILQFMLMQEQARGQGINSRCPRPPYLSGPTPCLFNLPPLAPPMPPVPPASPPALRPPSPLSLARIDQEQYHSATIASVPPEIAARIARSEARAERSKRRGSRGVELPENDVRRQIGCRLMNLGNSCYQNCILQILVNLPDVRQRLVEFAAGHTACEEDYCFPRDLSRHAVDVPVAAAKGQALSASWVLKYQQAGEGVIGDLYRQSDPACFLHGAADWCVDRAAGPAHALPLFHDLFEGAAFEHEWVDPASFPRCPVQPKNLHSQPFLMLNIPVPASPSSVMACLRASVFEDKVVTGRECEEEGCPYGRPAARSPPSMRKEREEAGREESAGGRGRRTPPPVKGGRGGGAGEGSATTPMRRSSPAPPSPRPPLSPRCSPSPPARHDKHQQLRLAHLPRYVCLRLLRFDNSLKKIRTPVAYEETIDFGHFVSREQEAGTTKREGGAEAHGGAGVGGKRKRRESVKGEGERVVLSLNAEGGEAAGGQGLKGEEQGVRGPSEYELMSVVLHQGRTRQRGHYYLYQRVLEGVEGGGESGKWWLFDDAKRYQEVEACRVLRASDEVYMLVYRRRDRAEKGGRGRGRGKGKGRSSSKGMEKTSSERKKGRHRYEY
Sbjct:    1 MVPCPDGDRPRTIASKCTHTILQFMLMQEQARGQGINSRCPRPPYLSGPTPCLFNLPPLAPPMPPVPPASPPALRPPSPLSLARIDQEQYHSATIASVPPEIAARIARSEARAERSKRRGSRGVELPENDVRRQIGCRLMNLGNSCYQNCILQILVNLPDVRQRLVEFAAGHTACEEDYCFPRDLSRHAVDVPVAAAKGQALSASWVLKYQQAGEGVIGDLYRQSDPACFLHGAADWCVDRAAGPAHALPLFHDLFEGAAFEHEWVDPASFPRCPVQPKNLHSQPFLMLNIPVPASPSSVMACLRASVFEDKVVTGRECEEEGCPYGRPAARSPPSMRKEREEAGREESAGGRGRRTPPPVKGGRGGGAGEGSATTPMRRSSPAPPSPRPPLSPRCSPSPPARHDKHQQLRLAHLPRYVCLRLLRFDNSLKKIRTPVAYEETIDFGHFVSREQEAGTTKREGGAEAHGGAGVGGKRKRRESVKGEGERVVLSLNAEGGEAAGGQGLKGEEQGVRGPSEYELMSVVLHQGRTRQRGHYYLYQRVLEGVEGGGESGKWWLFDDAKRYQEVEACRVLRASDEVYMLVYRRRDRAEKGGRGRGRGKGKGRSSSKGMEKTSSERKKGRHRYEY 628
The following BLAST results are available for this feature:
BLAST of EWM22713.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103290|gb|EWM22713.1|0.000e+0100.00Peptidase C19, ubiquitin carboxyl-terminal hydrola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7983rna7983Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications