EWM22718.1, cds7957 (CDS) Nannochloropsis gaditana

Overview
NameEWM22718.1
Unique Namecds7957
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:276220..276621 -
Alignment locationKK037247.1:275831..275917 -
Alignment locationKK037247.1:275642..275674 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22718.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100641g2.3005.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:276220..276621 -
KK037247.1supercontigKK037247.1:275831..275917 -
KK037247.1supercontigKK037247.1:275642..275674 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM22718.1 vs. NCBI_GenBank
Match: gi|585103296|gb|EWM22718.1| (hypothetical protein Naga_100641g2 [Nannochloropsis gaditana])

HSP 1 Score: 355.14 bits (910), Expect = 4.531e-124
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 
Query:    1 MMSGAHRGHRSLTPSLSPSSLLYSGAYLWRGRRWREGRRCKRQPRPQLPSAPLSESLMPFSFLFTLMHTVVWHPSLAVAATQVLVREVAAAAAAGWLVMGESSVLKGRHYLQLFILALLFMFAIFTRKSIWIYYTVFIIFAGMIFIVDILFQDFQFVYDPDPNNWRRKTDPQD 173
            MMSGAHRGHRSLTPSLSPSSLLYSGAYLWRGRRWREGRRCKRQPRPQLPSAPLSESLMPFSFLFTLMHTVVWHPSLAVAATQVLVREVAAAAAAGWLVMGESSVLKGRHYLQLFILALLFMFAIFTRKSIWIYYTVFIIFAGMIFIVDILFQDFQFVYDPDPNNWRRKTDPQD
Sbjct:    1 MMSGAHRGHRSLTPSLSPSSLLYSGAYLWRGRRWREGRRCKRQPRPQLPSAPLSESLMPFSFLFTLMHTVVWHPSLAVAATQVLVREVAAAAAAGWLVMGESSVLKGRHYLQLFILALLFMFAIFTRKSIWIYYTVFIIFAGMIFIVDILFQDFQFVYDPDPNNWRRKTDPQD 173
[Close]
BLAST of EWM22718.1 vs. NCBI_GenBank
Match: gi|553193869|ref|XP_005855849.1| (hypothetical protein NGA_0570000 [Nannochloropsis gaditana CCMP526] >gi|422293222|gb|EKU20522.1| hypothetical protein NGA_0570000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 157.147 bits (396), Expect = 3.792e-47
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 
Query:   99 MGESSVLKGRHYLQLFILALLFMFAIFTRKSIWIYYTVFIIFAGMIFIVDILFQDFQFVYDPDPNNWRRKTDPQD 173
            MGESSVLKGRHYLQLFILALLFMFAIFTRKSIWIYYTVFIIFAGMIFIVDILFQDFQFVYDPDPNNWRRKTDPQD
Sbjct:    1 MGESSVLKGRHYLQLFILALLFMFAIFTRKSIWIYYTVFIIFAGMIFIVDILFQDFQFVYDPDPNNWRRKTDPQD 75
The following BLAST results are available for this feature:
BLAST of EWM22718.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103296|gb|EWM22718.1|4.531e-124100.00hypothetical protein Naga_100641g2 [Nannochloropsi... [more]
gi|553193869|ref|XP_005855849.1|3.792e-47100.00hypothetical protein NGA_0570000 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7979rna7979Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications