EWM29878.1, cds795 (CDS) Nannochloropsis gaditana

Overview
NameEWM29878.1
Unique Namecds795
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:438936..439066 -
Alignment locationCM002456.1:437581..438369 -
Alignment locationCM002456.1:436926..437211 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29878.1
ProductWD40-repeat-containing domain protein
Orig transcript idgnl|cribi|Naga_100106g8.1452.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:438936..439066 -
CM002456.1supercontigCM002456.1:437581..438369 -
CM002456.1supercontigCM002456.1:436926..437211 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
Homology
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BLAST of EWM29878.1 vs. NCBI_GenBank
Match: gi|585112460|gb|EWM29878.1| (WD40-repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0 
Query:    1 MRFRVCTADACHRSVHGGNTSSCDDLDTSDMSSDSRFSKLPKKKRLLIQIKYTGTRMPDDSHFFDDAAYISHIRDEAATKEATIFHTAHCPQNRYLLASSNKGRIAIWDLSFYLFPAASASLLTTCPSLSFASRASPLLTRGFSRHLRQYECRMFPAALRRKGFPCLSIQVSERAINHVMFLGEGSTSPLLVLAGDDGIYVWPWAHILKLLSQAIGEDGGMDQDCTQGIPGNSCITQDLGAPSALLKALPSQEAWPFLTESNQVAPSFHSSSSTSPSVCFSACGDALVRQWDLETQKCASVLIGHTGFSMVSAARTDCAIQGVAFEEEKIISVGNERQALHWARPGLGKAARVTTDIPSVFSVNVRRSPPNGDGVTVYAGRADHVSVFVHPEHSAFNLKFR 401
            MRFRVCTADACHRSVHGGNTSSCDDLDTSDMSSDSRFSKLPKKKRLLIQIKYTGTRMPDDSHFFDDAAYISHIRDEAATKEATIFHTAHCPQNRYLLASSNKGRIAIWDLSFYLFPAASASLLTTCPSLSFASRASPLLTRGFSRHLRQYECRMFPAALRRKGFPCLSIQVSERAINHVMFLGEGSTSPLLVLAGDDGIYVWPWAHILKLLSQAIGEDGGMDQDCTQGIPGNSCITQDLGAPSALLKALPSQEAWPFLTESNQVAPSFHSSSSTSPSVCFSACGDALVRQWDLETQKCASVLIGHTGFSMVSAARTDCAIQGVAFEEEKIISVGNERQALHWARPGLGKAARVTTDIPSVFSVNVRRSPPNGDGVTVYAGRADHVSVFVHPEHSAFNLKFR
Sbjct:    1 MRFRVCTADACHRSVHGGNTSSCDDLDTSDMSSDSRFSKLPKKKRLLIQIKYTGTRMPDDSHFFDDAAYISHIRDEAATKEATIFHTAHCPQNRYLLASSNKGRIAIWDLSFYLFPAASASLLTTCPSLSFASRASPLLTRGFSRHLRQYECRMFPAALRRKGFPCLSIQVSERAINHVMFLGEGSTSPLLVLAGDDGIYVWPWAHILKLLSQAIGEDGGMDQDCTQGIPGNSCITQDLGAPSALLKALPSQEAWPFLTESNQVAPSFHSSSSTSPSVCFSACGDALVRQWDLETQKCASVLIGHTGFSMVSAARTDCAIQGVAFEEEKIISVGNERQALHWARPGLGKAARVTTDIPSVFSVNVRRSPPNGDGVTVYAGRADHVSVFVHPEHSAFNLKFR 401
The following BLAST results are available for this feature:
BLAST of EWM29878.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112460|gb|EWM29878.1|0.000e+0100.00WD40-repeat-containing domain protein [Nannochloro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna795rna795Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications