EWM22747.1, cds7920 (CDS) Nannochloropsis gaditana

Overview
NameEWM22747.1
Unique Namecds7920
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:171054..171102 -
Alignment locationKK037247.1:170763..170857 -
Alignment locationKK037247.1:170381..170488 -
Alignment locationKK037247.1:170114..170206 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22747.1
Producttranslocase of inner mitochondrial membrane 13
Orig transcript idgnl|cribi|Naga_100143g2.3776.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:171054..171102 -
KK037247.1supercontigKK037247.1:170763..170857 -
KK037247.1supercontigKK037247.1:170381..170488 -
KK037247.1supercontigKK037247.1:170114..170206 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR004217Tim10/DDP_fam_Znf
Homology
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|585103346|gb|EWM22747.1| (translocase of inner mitochondrial membrane 13 [Nannochloropsis gaditana])

HSP 1 Score: 239.58 bits (610), Expect = 3.432e-80
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 MQLRSWVERLCHITCAGGLAIVTSPTDRTSVDMAQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSATR 114
            MQLRSWVERLCHITCAGGLAIVTSPTDRTSVDMAQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSATR
Sbjct:    1 MQLRSWVERLCHITCAGGLAIVTSPTDRTSVDMAQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSATR 114          
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|585103345|gb|EWM22746.1| (translocase of inner mitochondrial membrane 13 [Nannochloropsis gaditana])

HSP 1 Score: 171.785 bits (434), Expect = 8.051e-54
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
Query:   33 MAQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSATR 114
            MAQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSATR
Sbjct:    1 MAQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSATR 82          
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|545703871|ref|XP_005704260.1| (mitochondrial protein translocase, MPT family [Galdieria sulphuraria] >gi|452820701|gb|EME27740.1| mitochondrial protein translocase, MPT family [Galdieria sulphuraria])

HSP 1 Score: 85.5001 bits (210), Expect = 1.305e-19
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 0
Query:   27 DRTSVDMAQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSA 112
            D+ +++   KL+P+++  V  + R EM  Q  QELVQ +++KCF KC  K G+ L S EQ C+A CMDRY++ M +V  +L ERS+
Sbjct:    4 DKETIERISKLSPEERNQVEERVRNEMLRQVFQELVQNISEKCFLKCITKPGSSLTSSEQTCLAKCMDRYLDAMGIVSKTLIERSS 89          
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|780688791|ref|XP_011699120.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Wasmannia auropunctata])

HSP 1 Score: 84.3445 bits (207), Expect = 3.659e-19
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 0
Query:   34 AQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSER 110
            A  LT  Q++ ++ + + ++A    QEL+ KMT+KCF KC GK G  LDS EQ C+AMCMDRY+++ N+V  + SER
Sbjct:    6 AGNLTGSQRDELMQQLKQQIAVANAQELLTKMTEKCFKKCIGKPGTSLDSSEQKCIAMCMDRYMDSFNLVSKTYSER 82          
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|751238992|ref|XP_011173468.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-B-like isoform X1 [Solenopsis invicta])

HSP 1 Score: 83.9593 bits (206), Expect = 5.567e-19
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   37 LTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSER 110
            L+  QQE  + + + ++A    QEL+QKMT+KCF KC GK G  LDS EQ C+AMCMDRY+++ N+V  + SER
Sbjct:   11 LSSSQQE-FVQQVKQQIAVANAQELLQKMTEKCFKKCIGKPGTSLDSSEQKCIAMCMDRYMDSFNLVSKTYSER 83          
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|695432054|ref|XP_009530841.1| (hypothetical protein PHYSODRAFT_286614 [Phytophthora sojae] >gi|348673593|gb|EGZ13412.1| hypothetical protein PHYSODRAFT_286614 [Phytophthora sojae])

HSP 1 Score: 83.5741 bits (205), Expect = 6.090e-19
Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = 0
Query:   37 LTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSA 112
             TP Q+  +I++ R+E+  QA+QEL Q + +KCF KC  +   +LD K+QNC+A+C++RYI+TM VV  ++++R +
Sbjct:    6 FTPQQKAELINRVRSEVQQQALQELTQNLQEKCFDKCITRPNGKLDGKQQNCLALCINRYIDTMKVVSEAMAQRGS 81          
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|675859818|ref|XP_009015469.1| (hypothetical protein HELRODRAFT_64842 [Helobdella robusta] >gi|555702868|gb|ESO06101.1| hypothetical protein HELRODRAFT_64842 [Helobdella robusta])

HSP 1 Score: 83.9593 bits (206), Expect = 6.340e-19
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 0
Query:   34 AQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSER 110
            A KL  +Q++ ++ + +A++A    QEL+QKM+DKCF KC  K G+ LD+ EQ C+AMCMDRY++T N+V  + ++R
Sbjct:   11 AGKLDSNQKQQLMEQVKAQIAVANAQELLQKMSDKCFKKCIPKPGSGLDNSEQKCIAMCMDRYMDTWNIVSKTYTQR 87          
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|1070139507|ref|XP_018356596.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-B [Trachymyrmex septentrionalis])

HSP 1 Score: 83.5741 bits (205), Expect = 6.852e-19
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   37 LTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSER 110
            LT  Q++ ++ + + ++A    QEL+ KMT+KCF KC GK G  LDS EQ C+AMCMDRY+++ N+V  S SER
Sbjct:    8 LTSLQRDELMQQVKQQIAVANAQELLTKMTEKCFKKCIGKPGTSLDSSEQKCIAMCMDRYLDSFNLVSKSYSER 81          
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|801399925|ref|XP_012060497.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-B [Atta cephalotes] >gi|1068423267|ref|XP_018056184.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-B [Atta colombica] >gi|1009351257|gb|KYM76737.1| Mitochondrial import inner membrane translocase subunit Tim13-B [Atta colombica])

HSP 1 Score: 83.5741 bits (205), Expect = 7.851e-19
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   37 LTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSER 110
            LT  Q++ ++ + + ++A    QEL+ KMT+KCF KC GK G  LDS EQ CVAMCMDRY+++ N+V  + SER
Sbjct:    9 LTGSQRDELMQQVKQQIAVANAQELLTKMTEKCFKKCIGKPGTSLDSSEQKCVAMCMDRYMDSFNLVSKTYSER 82          
BLAST of EWM22747.1 vs. NCBI_GenBank
Match: gi|826411472|ref|XP_012542773.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-B-like [Monomorium pharaonis])

HSP 1 Score: 83.5741 bits (205), Expect = 9.047e-19
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   37 LTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSER 110
            LT  Q++ ++ + + ++A    QEL+QKMT+KCF KC  K G  LDS EQ C+AMCMDRY+++ N+V  + SER
Sbjct:    9 LTGSQRDELMQQVKQQIAVANAQELLQKMTEKCFRKCISKPGTSLDSSEQKCIAMCMDRYMDSFNIVSKTYSER 82          
The following BLAST results are available for this feature:
BLAST of EWM22747.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103346|gb|EWM22747.1|3.432e-80100.00translocase of inner mitochondrial membrane 13 [Na... [more]
gi|585103345|gb|EWM22746.1|8.051e-54100.00translocase of inner mitochondrial membrane 13 [Na... [more]
gi|545703871|ref|XP_005704260.1|1.305e-1944.19mitochondrial protein translocase, MPT family [Gal... [more]
gi|780688791|ref|XP_011699120.1|3.659e-1948.05PREDICTED: mitochondrial import inner membrane tra... [more]
gi|751238992|ref|XP_011173468.1|5.567e-1951.35PREDICTED: mitochondrial import inner membrane tra... [more]
gi|695432054|ref|XP_009530841.1|6.090e-1943.42hypothetical protein PHYSODRAFT_286614 [Phytophtho... [more]
gi|675859818|ref|XP_009015469.1|6.340e-1946.75hypothetical protein HELRODRAFT_64842 [Helobdella ... [more]
gi|1070139507|ref|XP_018356596.1|6.852e-1950.00PREDICTED: mitochondrial import inner membrane tra... [more]
gi|801399925|ref|XP_012060497.1|7.851e-1950.00PREDICTED: mitochondrial import inner membrane tra... [more]
gi|826411472|ref|XP_012542773.1|9.047e-1948.65PREDICTED: mitochondrial import inner membrane tra... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7942rna7942Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications