EWM29888.1, cds786 (CDS) Nannochloropsis gaditana

Overview
NameEWM29888.1
Unique Namecds786
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:416680..417355 +
Alignment locationCM002456.1:417477..417660 +
Alignment locationCM002456.1:417782..418205 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29888.1
Productmethyltransferase family
Orig transcript idgnl|cribi|Naga_100035g48.3352.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:416680..417355 +
CM002456.1supercontigCM002456.1:417477..417660 +
CM002456.1supercontigCM002456.1:417782..418205 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006342FkbM_mtfrase
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|585112471|gb|EWM29888.1| (methyltransferase family [Nannochloropsis gaditana])

HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0
Identity = 427/427 (100.00%), Postives = 427/427 (100.00%), Query Frame = 0
Query:    1 MCAHGHTLHQLMSLKFLYHRIQLIQTHVHMHSKPIHPKRTTPRPLQSQDGMGLSSLSSSLARTQGAVGERSKSAIDEKLHRRLCRLPRSAQQQRCMVIALVCMCIVIAMAALQPIFGSLHSLLAAHPASLASRPPTRERHAQRGLSLPERLSAAYLDYMDETQAMQDQAEADETWIMPEECKQMTMEVDSRKTFYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLKSGYMGHVVDTDDNATNGVQGTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGFWKVTDIAHVDDIFVRMKFMEHARVDARPHYYQMMKDTQRQRGRPIIAPW 427
            MCAHGHTLHQLMSLKFLYHRIQLIQTHVHMHSKPIHPKRTTPRPLQSQDGMGLSSLSSSLARTQGAVGERSKSAIDEKLHRRLCRLPRSAQQQRCMVIALVCMCIVIAMAALQPIFGSLHSLLAAHPASLASRPPTRERHAQRGLSLPERLSAAYLDYMDETQAMQDQAEADETWIMPEECKQMTMEVDSRKTFYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLKSGYMGHVVDTDDNATNGVQGTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGFWKVTDIAHVDDIFVRMKFMEHARVDARPHYYQMMKDTQRQRGRPIIAPW
Sbjct:    1 MCAHGHTLHQLMSLKFLYHRIQLIQTHVHMHSKPIHPKRTTPRPLQSQDGMGLSSLSSSLARTQGAVGERSKSAIDEKLHRRLCRLPRSAQQQRCMVIALVCMCIVIAMAALQPIFGSLHSLLAAHPASLASRPPTRERHAQRGLSLPERLSAAYLDYMDETQAMQDQAEADETWIMPEECKQMTMEVDSRKTFYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLKSGYMGHVVDTDDNATNGVQGTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGFWKVTDIAHVDDIFVRMKFMEHARVDARPHYYQMMKDTQRQRGRPIIAPW 427          
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|496485956|ref|WP_009194526.1| (methyltransferase FkbM family [Cesiribacter andamanensis] >gi|470230050|gb|EMR03692.1| methyltransferase, FkbM family [Cesiribacter andamanensis AMV16])

HSP 1 Score: 130.568 bits (327), Expect = 4.928e-32
Identity = 79/219 (36.07%), Postives = 121/219 (55.25%), Query Frame = 0
Query:  190 SRKTFYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLK-SGY---MGHVVDTDDNA-----TNGVQ----GTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGFWKVTDIAHVDDIFVRMK 395
            ++  FYS+ GQD ++Y+ FF+ GQ S     FF++IGAN   + SNT+FFEK  GW GLC+E +P      E  R C   N+C+SNK    +FLK  GY   +  + +  D+A      N +Q      D++EIPC  + ++L ++NI+ VDF SID E GE   L  +   D H   I+V   E  +    L+ +++  G+ +V  +   D+I+VR +
Sbjct:    2 TKHKFYSQYGQDQYIYQKFFK-GQESG----FFIEIGANDGITYSNTYFFEKECGWNGLCIEPHPSAYAKLEQNRNCLTMNICVSNKVGINEFLKIEGYAEMLSGLNEKYDDAHIERINNSIQIHGGKKDIIEIPCKRLDQILDENNISKVDFCSIDTEGGE---LEIIESADLHYRDINVFTIENNYFGDDLKKMMAKYGYKQVNKLV-CDEIYVRKR 211          
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|1189389424|gb|OSX76411.1| (hypothetical protein BU14_0192s0027 [Porphyra umbilicalis])

HSP 1 Score: 118.242 bits (295), Expect = 1.829e-26
Identity = 73/223 (32.74%), Postives = 107/223 (47.98%), Query Frame = 0
Query:  165 MQDQAEADETWIMPEECKQMTME---VDSRKTFYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLKSGYMGHVVDTDDNATN------GVQGTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGF 378
            M+D   AD       ECK  T +         F+S+ GQD +LY   FR       R   F+D+  N P   SNT+F E CLGW GLCVE N    +     R C++  +C++ +A T++F+++G +  + DT+ N         GV       I C  ++ +L +  IT VDF+S+DIE  E  AL  +   D   + I V+A E   +D   R  L   G+
Sbjct:   82 MRDPRPADA------ECKPRTPDNCPAGVAPRFFSQYGQDHWLYTQHFRH----LARPGVFVDLATNHPVYISNTYFLESCLGWSGLCVEPNSAYHERIVAWRSCELTPLCVAREAKTVEFIEAGGLSGIADTNKNVGGRGAWQAGVATAPRRNITCAPLSAMLHRRGITEVDFMSLDIEGAEPEALQSI---DWGAVTIKVIALEDEAADHGPRRFLEARGY 291          
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|406987348|gb|EKE07726.1| (methyltransferase fkbm family [uncultured bacterium] >gi|1084492959|gb|OGN56356.1| hypothetical protein A2796_02925 [Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39] >gi|1084494411|gb|OGN57702.1| hypothetical protein A3C42_06815 [Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_45_9] >gi|1084497212|gb|OGN60252.1| hypothetical protein A3D96_05415 [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_44_59] >gi|1084504727|gb|OGN67095.1| hypothetical protein A2978_00630 [Chlamydiae bacterium RIFCSPLOWO2_01_FULL_44_52] >gi|1084505341|gb|OGN67685.1| hypothetical protein A3I67_04565 [Chlamydiae bacterium RIFCSPLOWO2_02_FULL_45_22] >gi|1084509165|gb|OGN71388.1| hypothetical protein A3F79_03230 [Chlamydiae bacterium RIFCSPLOWO2_12_FULL_45_20])

HSP 1 Score: 110.923 bits (276), Expect = 1.581e-24
Identity = 71/216 (32.87%), Postives = 114/216 (52.78%), Query Frame = 0
Query:  194 FYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLK-SGYMGHVVDTDDNAT-------------NGVQGTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGFWKVTDIAHVDDIFVRMK 395
            FYS+  QD ++Y+ FF++ Q        F+DIGA+   + SNT+FFEK +GW G+CVE  P++    +  R C     CI +   ++ FLK SG+   +    +N               NG Q ++++ + C  +T+LL  H++ H+D+LSID E GE   L  +   D   I IDV+  E  + D   +  L  LG+ K+ ++   DDI+ ++K
Sbjct:   28 FYSQYQQDQYVYEKFFKNKQNG-----VFVDIGAHDGITLSNTYFFEKSMGWTGICVEPIPEVYNRLKKNRSCVCVQGCIFDNRDSVPFLKISGWAEMLSGIMENYDPQHLKRIQWEIDLNGGQ-SEIINVKCYDLTDLLIDHHMHHIDYLSIDTEGGELGILQSI---DFSRIDIDVIEVENNYHDP-FQAFLEPLGYRKICELG-PDDIYQKIK 232          
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|1084502646|gb|OGN65170.1| (hypothetical protein A3E80_01265 [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9])

HSP 1 Score: 109.383 bits (272), Expect = 9.074e-24
Identity = 68/213 (31.92%), Postives = 114/213 (53.52%), Query Frame = 0
Query:  193 TFYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLK-SGY---MGHVVDTDDNATNG----------VQGTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGFWKVTDIAHVDDIF 391
            TFYS+ GQD ++Y+ FF++       K  F+DIGA+   + SNT FFE+ LGWEG+C+E  P++ +  +  R       CIS+KA T +FL+  GY   +  ++D  D    G              D++ + C  + ++L K+   HVD+LS+D E GE   L  +   D     I+++  E  ++++++R+ L+  G ++    A  DD+F
Sbjct:   21 TFYSQCGQDQYIYESFFKEKP-----KGIFIDIGAHDGITFSNTKFFEE-LGWEGICIEPIPEVFEELKKNRSSICVKGCISDKAGTGRFLRIKGYPEMLSGLLDYYDPTHLGRALTEIYSAPTNSCDVIAVECFLLNDILEKNGYFHVDYLSLDTEGGEFEILQSI---DFEKFDIEIIEVENNFNESKIRYFLASKG-YEFMGQAGWDDVF 223          
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|818312347|gb|KKP96105.1| (Methyltransferase FkbM family [candidate division TM6 bacterium GW2011_GWF2_36_131] >gi|818320312|gb|KKQ03701.1| Methyltransferase FkbM family [candidate division TM6 bacterium GW2011_GWE2_36_25] >gi|818337904|gb|KKQ20063.1| Methyltransferase FkbM family [candidate division TM6 bacterium GW2011_GWA2_36_9])

HSP 1 Score: 107.071 bits (266), Expect = 3.778e-23
Identity = 68/216 (31.48%), Postives = 109/216 (50.46%), Query Frame = 0
Query:  194 FYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLKSG----YMGHVVDTDDNA----------TNGVQGTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGFWKVTDIAHVDDIFVRMK 395
            +YS+ GQD ++++  FR  +    R  FF DIGA+   S SNT+FFEK + W G+CVE +P++ K  +  R C     CI +K     F K       +  + DT D+A          T G    ++V + C     + A++ I H+DFLS+D E  E + +  +   D + I IDV+A E   +D ++   L+  G+ ++      DDI+ + K
Sbjct:   31 YYSQCGQDKYVHEVLFRKNK----RYGFFFDIGAHDGMSYSNTYFFEKEMEWAGICVEPHPEIFKELKKNRCCICMQGCIFDKEGEFDFAKVNGCPEMLSGLTDTFDDAHQKRVVDEIKTRG-GSQEIVRVKCFKFNNICAQYGIKHIDFLSVDTEGSEESIIKSI---DFNKIDIDVIAVENNNNDKKIMQHLNQKGYKRIASKGG-DDIYRKKK 237          
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|303291364|ref|XP_003064968.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|303291366|ref|XP_003064969.1| predicted protein [Micromonas pusilla CCMP1545] >gi|226453639|gb|EEH50948.1| predicted protein [Micromonas pusilla CCMP1545] >gi|226453640|gb|EEH50949.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 108.227 bits (269), Expect = 8.966e-23
Identity = 72/240 (30.00%), Postives = 114/240 (47.50%), Query Frame = 0
Query:  183 QMTMEVDSRKTFYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLKSGYMGHVVDTDDNATNGVQGTDMVEIPCITITELLAKH--NITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFW-SDAQLRWLLSDLGFWKVTDIAHVDDIFVRMKFMEHARVDARPHYYQMMKDTQRQR 419
            Q T+      T  S+  QD+++ ++ F   Q     K F++D GAN  Q  SNT FF+ CLGWEGLC E N +   +    R C +   CI++   TL F+ +G  G +   D   ++ VQ        C  + ++L K+    THVDF S+D+E  E   L  +       I  + +  E FW SD  +   +++ GF KV  +A +D +++     + AR    P++    +   R R
Sbjct:   93 QQTLGSTKYYTMGSQFEQDIYMIRNIFY-SQVLSAEKGFYVDSGANHAQQLSNTLFFDVCLGWEGLCAEPNEEYHLSLRTNRTCVLAPECIADGEKTLPFVFAGAGGRIASNDSLTSSSVQ--------CRRLDQMLDKYARGRTHVDFFSLDVEGSEMTILKAV---PWDKISFNAILIETFWLSDRIVDRFMTERGFAKVQQLA-IDSLYLTWSQRDEARPWLPPNWEHFWELNTRYR 319          
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|922856362|gb|KOO24725.1| (methyltransferase family, partial [Chrysochromulina sp. CCMP291])

HSP 1 Score: 106.301 bits (264), Expect = 4.612e-22
Identity = 71/256 (27.73%), Postives = 120/256 (46.88%), Query Frame = 0
Query:  179 EECKQMTMEVDSRKTFYSELGQDLFLYKHFFRDGQTSDGRKR--FFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLKS----GYMGHVVDTDDNATNGVQGTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLL--QPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGFWKVTDIAHVDDIFVRMKFMEHARVDARPHYYQMMKDTQRQRGRPIIAP 426
            E+  +MT        F S+ GQD +++++       +  RK   FF+D+ +N     SNT+F E+CLGW GLC+E NP   +    +R+C +   C+S+ A T++ +      G    VV    +     +    V++ C T+  +L +H + H+DF+S+DIE  E  A+S L       H + IDV++AE            S   +W+  +  H     +   F+       RP Y   +++     G+PI+ P
Sbjct:   62 EKTLRMTGYDRDVPNFVSQWGQDWWIWQNH------AQYRKEPGFFVDLASNDAMWASNTYFLEQCLGWRGLCIEPNPVHHERIRAERKCTLVPSCVSDAAKTIEMILPDSFHGGAARVVKQQSD-LRLARNKKPVQMECRTLRSILHEHKVKHIDFMSLDIEGHEPEAMSTLKLDHGGEHGVTIDVVSAETN----------SSAAYWRAGNYRHYSPKGMEQVFL-------RPGYQMPIEEA----GKPILWP 289          
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|818249255|gb|KKP36088.1| (hypothetical protein UR26_C0001G0132 [candidate division TM6 bacterium GW2011_GWF2_32_72])

HSP 1 Score: 103.99 bits (258), Expect = 2.343e-20
Identity = 69/212 (32.55%), Postives = 113/212 (53.30%), Query Frame = 0
Query:  196 SELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLK-SGY---MGHVVDTDDN---------ATNGVQGTDMVEIPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAEVFWSDAQLRWLLSDLGFWKVTDIAHVDDIFVRM 394
            S+ GQD F+Y+ FF++   SDG    F+DIGA   ++ SNTFFFEK LGW+G+C E    +      +R C   N CI++     +FL+  GY   +  +V + D+           N    +  ++  C  + +LL ++N   VD+LS+DIE GE   L  +   +  D+ IDV+  E  + D++++  L   G+  V+ IA  D+I+ ++
Sbjct:  382 SQYGQDRFVYETFFKN--KSDG---VFVDIGATDGETISNTFFFEKSLGWKGICAEPRGSVFNKLSDKRNCVCFNGCITDFNGETEFLEIDGYSQDLSGIVKSYDSRHLQRIETELENYGGASKKIKTKCRRLNDLLKENNFARVDYLSLDIEGGELDVLKGI---NFDDVFIDVIDVENNYKDSRIKDYLMGQGYELVSRIA-CDEIYRKI 584          
BLAST of EWM29888.1 vs. NCBI_GenBank
Match: gi|1189385845|gb|OSX72991.1| (hypothetical protein BU14_0389s0015 [Porphyra umbilicalis])

HSP 1 Score: 100.908 bits (250), Expect = 4.999e-20
Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 0
Query:  194 FYSELGQDLFLYKHFFRDGQTSDGRKRFFLDIGANSPQSNSNTFFFEKCLGWEGLCVEANPDLAKAFEGQRQCKVENVCISNKASTLKFLKSGYMGHVVDTDDNATNGVQGTDMVE------IPCITITELLAKHNITHVDFLSIDIEAGEHAALSPLLQPDAHDIKIDVMAAE 361
            F  + GQD +L+ + F+  +    R   F D+ AN     SNT+ FE CLGW+G+CVE N    +A    R C +  +C+S+   T+ F+    +  + DT+ N     +    V       + C T   +L +  +THVDFLS+D+E  E   L  +   D   ++IDV+A E
Sbjct:  136 FTGQFGQDAWLWSNHFKALR----RPGVFFDVAANEAVDISNTYVFETCLGWKGICVEPNTRYLRALHDLRTCDLVPLCLSDVPKTVSFIDYLGLSGIADTNKNVNGSAEWQRRVRTAPRRTLECTTGGAVLRRAALTHVDFLSLDVEGAELEVLRGI---DWDAVRIDVIALE 302          
The following BLAST results are available for this feature:
BLAST of EWM29888.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112471|gb|EWM29888.1|0.000e+0100.00methyltransferase family [Nannochloropsis gaditana... [more]
gi|496485956|ref|WP_009194526.1|4.928e-3236.07methyltransferase FkbM family [Cesiribacter andama... [more]
gi|1189389424|gb|OSX76411.1|1.829e-2632.74hypothetical protein BU14_0192s0027 [Porphyra umbi... [more]
gi|406987348|gb|EKE07726.1|1.581e-2432.87methyltransferase fkbm family [uncultured bacteriu... [more]
gi|1084502646|gb|OGN65170.1|9.074e-2431.92hypothetical protein A3E80_01265 [Chlamydiae bacte... [more]
gi|818312347|gb|KKP96105.1|3.778e-2331.48Methyltransferase FkbM family [candidate division ... [more]
gi|303291364|ref|XP_003064968.1|8.966e-2330.00predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|922856362|gb|KOO24725.1|4.612e-2227.73methyltransferase family, partial [Chrysochromulin... [more]
gi|818249255|gb|KKP36088.1|2.343e-2032.55hypothetical protein UR26_C0001G0132 [candidate di... [more]
gi|1189385845|gb|OSX72991.1|4.999e-2032.18hypothetical protein BU14_0389s0015 [Porphyra umbi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna786rna786Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications