EWM22821.1, cds7852 (CDS) Nannochloropsis gaditana

Overview
NameEWM22821.1
Unique Namecds7852
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002475.1:42513..42611 -
Alignment locationCM002475.1:42261..42350 -
Alignment locationCM002475.1:42019..42101 -
Alignment locationCM002475.1:41755..41855 -
Alignment locationCM002475.1:41198..41357 -
Alignment locationCM002475.1:40810..41113 -
Alignment locationCM002475.1:40460..40633 -

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Properties
Property NameValue
Protein idEWM22821.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100375g4.1525.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002475.1supercontigCM002475.1:42513..42611 -
CM002475.1supercontigCM002475.1:42261..42350 -
CM002475.1supercontigCM002475.1:42019..42101 -
CM002475.1supercontigCM002475.1:41755..41855 -
CM002475.1supercontigCM002475.1:41198..41357 -
CM002475.1supercontigCM002475.1:40810..41113 -
CM002475.1supercontigCM002475.1:40460..40633 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22821.1 vs. NCBI_GenBank
Match: gi|585103453|gb|EWM22821.1| (hypothetical protein Naga_100375g4 [Nannochloropsis gaditana])

HSP 1 Score: 679.863 bits (1753), Expect = 0.000e+0
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0
Query:    1 MGQAWRRPEGEPRVGKAELFIERARNLNPQAVERVKDWVNCDAFFIFNLGRSEAHRAESSRKNAVEYGLIQTAPIWQEKVAEWQDVLYPSPVQATITLVYEKENKKQAVSGFYNFRGHEWTLQHGLGPVFPPVYHWRGLRSVRPSSSQASSTSTSASSSPTKLGHREFRGEVKAAIRWSQTEPEYRGYVLFLSYCVSRTQALLQPLQPFLDPVLGTFLDIFVLSVFVEGWWKRMLVPAWTFLTQNRSVVVAAASVFLLPFLLLWVPALVFFPITLLIFWVSFFSLLCLTPIGCALVWLLLASKPVQGRLVRPIFQACLASPACRRWLTLPRSPYSL 336
            MGQAWRRPEGEPRVGKAELFIERARNLNPQAVERVKDWVNCDAFFIFNLGRSEAHRAESSRKNAVEYGLIQTAPIWQEKVAEWQDVLYPSPVQATITLVYEKENKKQAVSGFYNFRGHEWTLQHGLGPVFPPVYHWRGLRSVRPSSSQASSTSTSASSSPTKLGHREFRGEVKAAIRWSQTEPEYRGYVLFLSYCVSRTQALLQPLQPFLDPVLGTFLDIFVLSVFVEGWWKRMLVPAWTFLTQNRSVVVAAASVFLLPFLLLWVPALVFFPITLLIFWVSFFSLLCLTPIGCALVWLLLASKPVQGRLVRPIFQACLASPACRRWLTLPRSPYSL
Sbjct:    1 MGQAWRRPEGEPRVGKAELFIERARNLNPQAVERVKDWVNCDAFFIFNLGRSEAHRAESSRKNAVEYGLIQTAPIWQEKVAEWQDVLYPSPVQATITLVYEKENKKQAVSGFYNFRGHEWTLQHGLGPVFPPVYHWRGLRSVRPSSSQASSTSTSASSSPTKLGHREFRGEVKAAIRWSQTEPEYRGYVLFLSYCVSRTQALLQPLQPFLDPVLGTFLDIFVLSVFVEGWWKRMLVPAWTFLTQNRSVVVAAASVFLLPFLLLWVPALVFFPITLLIFWVSFFSLLCLTPIGCALVWLLLASKPVQGRLVRPIFQACLASPACRRWLTLPRSPYSL 336          
BLAST of EWM22821.1 vs. NCBI_GenBank
Match: gi|585110549|gb|EWM28204.1| (lipid droplet surface protein [Nannochloropsis gaditana])

HSP 1 Score: 90.5077 bits (223), Expect = 2.819e-17
Identity = 83/316 (26.27%), Postives = 130/316 (41.14%), Query Frame = 0
Query:   14 VGKAELFIERARNLNPQAVERVKDWVNCDAFFIFNLGRSEAHRAESSRKNAVEYGLIQTAPIWQEKVAEWQDVLYPSPVQATITLVYEKENKKQAVSGFYNFRGHEWTLQHGLGPVFPPVYHWRGLRSVRPSSSQASSTSTSASSSPTKLGHREFRGEVKAAIRWSQTEPEYRGYVLFLSYCVSRTQALLQPLQPFLDPVLGTFLDI-FVLSVFVEGWWKRMLVPAWTFLTQNRSVVVAAASVFLLPFLLLWVPALVFFPITLLIFWVSFFSLLCLTPIGCALVWLLLASKPVQGRLVRPIFQACLASPACRRWLT 328
            +G+  + + RARNL       +    NC   F +     E  R ESS K      +   AP W E+V  +  V YP   + +IT+VY +  K   V G      + WT  +      PP   W                       P       + GE+   I W++TE +YR  V  L   V +TQ   +PL+P L+  +     I   +S  +EG  +          TQ R      A+V       L VPA++F P+TL++    FF      P+  + +W+L+ +KPVQ +++ P+ +  L     ++ LT
Sbjct:   23 MGRLRVRLNRARNLKG---PEILGMSNCLVVFTY-----EGKREESSVK------VNDIAPAWHEEVT-FDKVPYPPSSKISITIVY-RSGKTDEVLGVACPGSNLWTTGNA-----PPQDRWL----------------------PIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGR----------TQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLT 285          
The following BLAST results are available for this feature:
BLAST of EWM22821.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103453|gb|EWM22821.1|0.000e+0100.00hypothetical protein Naga_100375g4 [Nannochloropsi... [more]
gi|585110549|gb|EWM28204.1|2.819e-1726.27lipid droplet surface protein [Nannochloropsis gad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7874rna7874Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications