EWM29921.1, cds783 (CDS) Nannochloropsis gaditana

Overview
NameEWM29921.1
Unique Namecds783
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:407179..407289 -
Alignment locationCM002456.1:406665..407099 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29921.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100035g44.3385.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:407179..407289 -
CM002456.1supercontigCM002456.1:406665..407099 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM29921.1 vs. NCBI_GenBank
Match: gi|585112504|gb|EWM29921.1| (hypothetical protein Naga_100035g44 [Nannochloropsis gaditana])

HSP 1 Score: 381.333 bits (978), Expect = 4.004e-134
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 
Query:    1 MNGWLFVRDEGTSQEDDLDLGPLPRIEGHAVIFERPTHETFNHKVIYVQTSPCPSRQRFECPKPEFWVNDQDALSLTLTFHAWGLKAEIGTRDLVMCAGHKRPGQCWPMAGTHQDKNSKHVPDCQMEIGSGIFAHICVKSSSTCVLSQRYLRKSKPQGVQSACPLNAARVRAVLGLWLLSK 181
            MNGWLFVRDEGTSQEDDLDLGPLPRIEGHAVIFERPTHETFNHKVIYVQTSPCPSRQRFECPKPEFWVNDQDALSLTLTFHAWGLKAEIGTRDLVMCAGHKRPGQCWPMAGTHQDKNSKHVPDCQMEIGSGIFAHICVKSSSTCVLSQRYLRKSKPQGVQSACPLNAARVRAVLGLWLLSK
Sbjct:    1 MNGWLFVRDEGTSQEDDLDLGPLPRIEGHAVIFERPTHETFNHKVIYVQTSPCPSRQRFECPKPEFWVNDQDALSLTLTFHAWGLKAEIGTRDLVMCAGHKRPGQCWPMAGTHQDKNSKHVPDCQMEIGSGIFAHICVKSSSTCVLSQRYLRKSKPQGVQSACPLNAARVRAVLGLWLLSK 181
[Close]
BLAST of EWM29921.1 vs. NCBI_GenBank
Match: gi|553196633|ref|XP_005856388.1| (dmc1-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292673|gb|EKU19975.1| dmc1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.4034 bits (176), Expect = 2.700e-13
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 
Query:   77 TLTFHAWGLKAEIGTRDLVMCAGHKRPGQCWPMAGT 112
            T TFHAWG KAEIGTRDLV+ AGHKRPGQCWPMAG+
Sbjct:   38 TDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGS 73
[Close]
BLAST of EWM29921.1 vs. NCBI_GenBank
Match: gi|585108763|gb|EWM26675.1| (Sad1/UNC domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 75.485 bits (184), Expect = 1.130e-12
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 
Query:   77 TLTFHAWGLKAEIGTRDLVMCAGHKRPGQCWPMAGT 112
            T TFHAWG KAEIGTRDLV+ AGHKRPGQCWPMAG+
Sbjct:  642 TDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGS 677
The following BLAST results are available for this feature:
BLAST of EWM29921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585112504|gb|EWM29921.1|4.004e-134100.00hypothetical protein Naga_100035g44 [Nannochlorops... [more]
gi|553196633|ref|XP_005856388.1|2.700e-1386.11dmc1-like protein, partial [Nannochloropsis gadita... [more]
gi|585108763|gb|EWM26675.1|1.130e-1286.11Sad1/UNC domain containing protein [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna783rna783Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications