EWM22861.1, cds7807 (CDS) Nannochloropsis gaditana

Overview
NameEWM22861.1
Unique Namecds7807
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:64837..66435 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22861.1
ProductRNA binding protein
Orig transcript idgnl|cribi|Naga_100341g2.8447.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:64837..66435 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|585103508|gb|EWM22861.1| (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1015.76 bits (2625), Expect = 0.000e+0
Identity = 532/532 (100.00%), Postives = 532/532 (100.00%), Query Frame = 0
Query:    1 MGKSSKSKADKTLGADVVVQSKGGSAEGTKAVGKKGKKAAKPVEPSSSSSSDSSSDEETAPTTNGTAGKKGGKVVAKPVAASSDSDDDSSSSSSEDEAPAPKKATPAAGKKEKLTKKKAAPESSDSDDSGSESDDSSDEEEAAVKPATPARGKTTAPSKKAEPESSSSESSDSSDEEEEEVVAAKPKAAEESSDESSSDSEEEEEEEEEEEKAATKAESSESGSESSSSEEDEDEDEDEEEEETAVAASKKRKGGEEGGQEKKKSKGAASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGGGRGGGRGGGRGGGRSFGGGGGGGFGGGRGGGRGGGRGGGRGGGRDGAINKNRGSIQAFAGNKKTFDD 532
            MGKSSKSKADKTLGADVVVQSKGGSAEGTKAVGKKGKKAAKPVEPSSSSSSDSSSDEETAPTTNGTAGKKGGKVVAKPVAASSDSDDDSSSSSSEDEAPAPKKATPAAGKKEKLTKKKAAPESSDSDDSGSESDDSSDEEEAAVKPATPARGKTTAPSKKAEPESSSSESSDSSDEEEEEVVAAKPKAAEESSDESSSDSEEEEEEEEEEEKAATKAESSESGSESSSSEEDEDEDEDEEEEETAVAASKKRKGGEEGGQEKKKSKGAASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGGGRGGGRGGGRGGGRSFGGGGGGGFGGGRGGGRGGGRGGGRGGGRDGAINKNRGSIQAFAGNKKTFDD
Sbjct:    1 MGKSSKSKADKTLGADVVVQSKGGSAEGTKAVGKKGKKAAKPVEPSSSSSSDSSSDEETAPTTNGTAGKKGGKVVAKPVAASSDSDDDSSSSSSEDEAPAPKKATPAAGKKEKLTKKKAAPESSDSDDSGSESDDSSDEEEAAVKPATPARGKTTAPSKKAEPESSSSESSDSSDEEEEEVVAAKPKAAEESSDESSSDSEEEEEEEEEEEKAATKAESSESGSESSSSEEDEDEDEDEEEEETAVAASKKRKGGEEGGQEKKKSKGAASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGGGRGGGRGGGRGGGRSFGGGGGGGFGGGRGGGRGGGRGGGRGGGRDGAINKNRGSIQAFAGNKKTFDD 532          
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|570938807|gb|ETP04064.1| (hypothetical protein F441_19082, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 206.838 bits (525), Expect = 8.844e-59
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0
Query:  248 ASKKRKG---GEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455
             SKKRK    GE+  + +K+  G     A+P +  ++F+ GLPWSATE+EV+  F  CG +T+  +PL++GRSSGTA++ F   +    A+AM+ + FG  GRW+++R  E         K M       EKP+GC S+FIGNL+W++DE T+R  FA CGE+TS R ATDRETGEFRGFGHVDFA   A + AV++AG+ V GR IRV+YA+ R
Sbjct:   34 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAEK--------KNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 233          
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|675176541|ref|XP_008897155.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566011284|gb|ETI34195.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567948826|gb|ETK74564.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567977483|gb|ETL27985.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568036832|gb|ETM34434.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568102939|gb|ETN17610.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570969177|gb|ETP32296.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 207.223 bits (526), Expect = 4.007e-58
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0
Query:  248 ASKKRKG---GEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455
             SKKRK    GE+  + +K+  G     A+P +  ++F+ GLPWSATE+EV+  F  CG +T+  +PL++GRSSGTA++ F   +    A+AM+ + FG  GRW+++R  E         K M       EKP+GC S+FIGNL+W++DE T+R  FA CGE+TS R ATDRETGEFRGFGHVDFA   A + AV++AG+ V GR IRV+YA+ R
Sbjct:   96 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 295          
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|970641898|gb|KUF83782.1| (28 kDa ribonucleoprotein [Phytophthora nicotianae])

HSP 1 Score: 207.223 bits (526), Expect = 4.115e-58
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0
Query:  248 ASKKRKG---GEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455
             SKKRK    GE+  + +K+  G     A+P +  ++F+ GLPWSATE+EV+  F  CG +T+  +PL++GRSSGTA++ F   +    A+AM+ + FG  GRW+++R  E         K M       EKP+GC S+FIGNL+W++DE T+R  FA CGE+TS R ATDRETGEFRGFGHVDFA   A + AV++AG+ V GR IRV+YA+ R
Sbjct:   97 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 296          
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|568006989|gb|ETL81234.1| (hypothetical protein, variant 3 [Phytophthora parasitica])

HSP 1 Score: 207.223 bits (526), Expect = 4.358e-58
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0
Query:  248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455
             SKKRK    GE+  + +K+  G     A+P +  ++F+ GLPWSATE+EV+  F  CG +T+  +PL++GRSSGTA++ F   +    A+AM+ + FG  GRW+++R  E         K M       EKP+GC S+FIGNL+W++DE T+R  FA CGE+TS R ATDRETGEFRGFGHVDFA   A + AV++AG+ V GR IRV+YA+ R
Sbjct:   96 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 295          
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|570315133|gb|ETO63081.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976])

HSP 1 Score: 207.223 bits (526), Expect = 5.221e-58
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0
Query:  248 ASKKRKG---GEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455
             SKKRK    GE+  + +K+  G     A+P +  ++F+ GLPWSATE+EV+  F  CG +T+  +PL++GRSSGTA++ F   +    A+AM+ + FG  GRW+++R  E         K M       EKP+GC S+FIGNL+W++DE T+R  FA CGE+TS R ATDRETGEFRGFGHVDFA   A + AV++AG+ V GR IRV+YA+ R
Sbjct:   96 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 295          
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|567977482|gb|ETL27984.1| (hypothetical protein L916_18596 [Phytophthora parasitica])

HSP 1 Score: 209.149 bits (531), Expect = 7.834e-58
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0
Query:  248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455
             SKKRK    GE+  + +K+  G     A+P +  ++F+ GLPWSATE+EV+  F  CG +T+  +PL++GRSSGTA++ F   +    A+AM+ + FG  GRW+++R  E         K M       EKP+GC S+FIGNL+W++DE T+R  FA CGE+TS R ATDRETGEFRGFGHVDFA   A + AV++AG+ V GR IRV+YA+ R
Sbjct:  186 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 385          
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|570969175|gb|ETP32294.1| (hypothetical protein F442_19044 [Phytophthora parasitica P10297])

HSP 1 Score: 209.92 bits (533), Expect = 1.581e-57
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0
Query:  248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455
             SKKRK    GE+  + +K+  G     A+P +  ++F+ GLPWSATE+EV+  F  CG +T+  +PL++GRSSGTA++ F   +    A+AM+ + FG  GRW+++R  E         K M       EKP+GC S+FIGNL+W++DE T+R  FA CGE+TS R ATDRETGEFRGFGHVDFA   A + AV++AG+ V GR IRV+YA+ R
Sbjct:  251 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 450          
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|970656307|gb|KUF94336.1| (hypothetical protein AM588_10007027 [Phytophthora nicotianae])

HSP 1 Score: 209.534 bits (532), Expect = 1.735e-57
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0
Query:  248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455
             SKKRK    GE+  + +K+  G     A+P +  ++F+ GLPWSATE+EV+  F  CG +T+  +PL++GRSSGTA++ F   +    A+AM+ + FG  GRW+++R  E         K M       EKP+GC S+FIGNL+W++DE T+R  FA CGE+TS R ATDRETGEFRGFGHVDFA   A + AV++AG+ V GR IRV+YA+ R
Sbjct:  250 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 449          
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|567948825|gb|ETK74563.1| (hypothetical protein L915_18691 [Phytophthora parasitica])

HSP 1 Score: 209.534 bits (532), Expect = 1.965e-57
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0
Query:  248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455
             SKKRK    GE+  + +K+  G     A+P +  ++F+ GLPWSATE+EV+  F  CG +T+  +PL++GRSSGTA++ F   +    A+AM+ + FG  GRW+++R  E         K M       EKP+GC S+FIGNL+W++DE T+R  FA CGE+TS R ATDRETGEFRGFGHVDFA   A + AV++AG+ V GR IRV+YA+ R
Sbjct:  251 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 450          
The following BLAST results are available for this feature:
BLAST of EWM22861.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103508|gb|EWM22861.1|0.000e+0100.00RNA binding protein [Nannochloropsis gaditana][more]
gi|570938807|gb|ETP04064.1|8.844e-5948.37hypothetical protein F441_19082, partial [Phytopht... [more]
gi|675176541|ref|XP_008897155.1|4.007e-5848.37hypothetical protein, variant [Phytophthora parasi... [more]
gi|970641898|gb|KUF83782.1|4.115e-5848.3728 kDa ribonucleoprotein [Phytophthora nicotianae][more]
gi|568006989|gb|ETL81234.1|4.358e-5848.37hypothetical protein, variant 3 [Phytophthora para... [more]
gi|570315133|gb|ETO63081.1|5.221e-5848.37hypothetical protein, variant 2 [Phytophthora para... [more]
gi|567977482|gb|ETL27984.1|7.834e-5848.37hypothetical protein L916_18596 [Phytophthora para... [more]
gi|570969175|gb|ETP32294.1|1.581e-5748.37hypothetical protein F442_19044 [Phytophthora para... [more]
gi|970656307|gb|KUF94336.1|1.735e-5748.37hypothetical protein AM588_10007027 [Phytophthora ... [more]
gi|567948825|gb|ETK74563.1|1.965e-5748.37hypothetical protein L915_18691 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7828rna7828Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications