EWM22869.1, cds7805 (CDS) Nannochloropsis gaditana

Overview
NameEWM22869.1
Unique Namecds7805
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:62442..62445 -
Alignment locationCM002474.1:62300..62357 -
Alignment locationCM002474.1:61989..62127 -
Alignment locationCM002474.1:61782..61882 -
Alignment locationCM002474.1:61230..61332 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22869.1
Productmajor facilitator superfamily
Orig transcript idgnl|cribi|Naga_100819g3.1351.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:62442..62445 -
CM002474.1supercontigCM002474.1:62300..62357 -
CM002474.1supercontigCM002474.1:61989..62127 -
CM002474.1supercontigCM002474.1:61782..61882 -
CM002474.1supercontigCM002474.1:61230..61332 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Homology
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|585103518|gb|EWM22869.1| (major facilitator superfamily [Nannochloropsis gaditana])

HSP 1 Score: 268.47 bits (685), Expect = 4.944e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query:    1 MPYWRSLSPAVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGGGGTCASFFLARLCVTAGIKRETLKDRLWHG 134
            MPYWRSLSPAVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGGGGTCASFFLARLCVTAGIKRETLKDRLWHG
Sbjct:    1 MPYWRSLSPAVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGGGGTCASFFLARLCVTAGIKRETLKDRLWHG 134          
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|224001012|ref|XP_002290178.1| (transporter belonging to the MFS superfamily [Thalassiosira pseudonana CCMP1335] >gi|220973600|gb|EED91930.1| transporter belonging to the MFS superfamily [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 121.709 bits (304), Expect = 7.915e-30
Identity = 59/98 (60.20%), Postives = 71/98 (72.45%), Query Frame = 0
Query:    6 SLSPAVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGG 103
              SP VPL+GQG+AYS +A+VLWPSVP TV +   G A+G+ T+IQN GLALFPLM AAIY A+G +YIP+VEL FV  A  GL  GL +  LD R G
Sbjct:  357 QFSPVVPLIGQGIAYSLYASVLWPSVPLTVAKQYTGTAFGVITSIQNIGLALFPLMIAAIYNASGQQYIPNVELFFVSCATAGLIVGLTMIQLDRRSG 454          
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|397589060|gb|EJK54515.1| (hypothetical protein THAOC_25852 [Thalassiosira oceanica])

HSP 1 Score: 104.76 bits (260), Expect = 3.813e-24
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 0
Query:    6 SLSPAVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGG 104
            S+ P +P+VGQG+AYS +A+VLWPSVP TVP    G A+G+ T++QN GLALFPL  A IY++ G  Y+P VEL F   A VG+A G+ +N+LD R GG
Sbjct:  237 SIPPVLPMVGQGVAYSLYASVLWPSVPLTVPRRLTGTAFGVITSLQNVGLALFPLAVAGIYRSGGGRYVPGVELFFASCAAVGVAVGVAMNMLDMRQGG 335          
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|219112637|ref|XP_002178070.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410955|gb|EEC50884.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 105.531 bits (262), Expect = 7.266e-24
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    4 WRSLSPAVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGG 104
            + +  PA+PL+GQGLAY+ +++VLWPS+  TVP+   GVA+G+ T+IQN GL L P+  A+IY ++G  YIP+VEL F   AV G   G+ +N LD   G 
Sbjct:  458 FTTFRPAIPLIGQGLAYALYSSVLWPSITLTVPQRSTGVAFGVITSIQNIGLTLVPMAIASIYTSSGHCYIPYVELFFTCCAVSGAMLGIGVNFLDQLTGN 558          
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|301122213|ref|XP_002908833.1| (Major Facilitator Superfamily (MFS) [Phytophthora infestans T30-4] >gi|262099595|gb|EEY57647.1| Major Facilitator Superfamily (MFS) [Phytophthora infestans T30-4])

HSP 1 Score: 98.9821 bits (245), Expect = 1.127e-21
Identity = 55/94 (58.51%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   11 VPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGG 104
            VPLV QG+AYS FAA LWPSVP+ V    VG AYG  TAIQN GLALFPL  AA +      YIP VELLFV   V+G   G+ LNV+D + G 
Sbjct:  376 VPLVLQGVAYSVFAAALWPSVPYVVEAKHVGTAYGAITAIQNIGLALFPLAVAAEFN-HDDRYIPGVELLFVSFGVLGSLVGIALNVVDYQNGS 468          
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|675191731|ref|XP_008904750.1| (hypothetical protein PPTG_10966 [Phytophthora parasitica INRA-310] >gi|566024950|gb|ETI47861.1| hypothetical protein F443_08001 [Phytophthora parasitica P1569] >gi|567962255|gb|ETK87782.1| hypothetical protein L915_07826 [Phytophthora parasitica] >gi|567990983|gb|ETL41201.1| hypothetical protein L916_07756 [Phytophthora parasitica] >gi|568020235|gb|ETL94369.1| hypothetical protein L917_07641 [Phytophthora parasitica] >gi|568050655|gb|ETM47589.1| hypothetical protein L914_07719 [Phytophthora parasitica] >gi|568095545|gb|ETN10313.1| hypothetical protein PPTG_10966 [Phytophthora parasitica INRA-310] >gi|570328618|gb|ETO76566.1| hypothetical protein F444_08046 [Phytophthora parasitica P1976] >gi|570952432|gb|ETP17689.1| hypothetical protein F441_07970 [Phytophthora parasitica CJ01A1] >gi|570986751|gb|ETP45680.1| hypothetical protein F442_07939 [Phytophthora parasitica P10297] >gi|970644846|gb|KUF85525.1| Major Facilitator Superfamily (MFS) [Phytophthora nicotianae])

HSP 1 Score: 98.9821 bits (245), Expect = 1.322e-21
Identity = 55/94 (58.51%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   11 VPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGG 104
            VPLV QG+AYS FAA LWPSVP+ V    VG AYG  TAIQN GLALFPL  AA +      YIP VELLFV   V+G   G+ LNV+D + G 
Sbjct:  412 VPLVLQGVAYSVFAAALWPSVPYVVEAKHVGTAYGAITAIQNIGLALFPLAVAAEFN-HDDRYIPGVELLFVSFGVLGSLVGIALNVVDYQNGS 504          
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|695428013|ref|XP_009529845.1| (hypothetical protein PHYSODRAFT_560629 [Phytophthora sojae] >gi|348676278|gb|EGZ16096.1| hypothetical protein PHYSODRAFT_560629 [Phytophthora sojae])

HSP 1 Score: 98.5969 bits (244), Expect = 1.576e-21
Identity = 55/94 (58.51%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   11 VPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGG 104
            VPLV QG+AYS FAA LWPSVP+ V    VG AYG  TAIQN GLALFPL  AA +      YIP VELLFV   V+G   G+ LNV+D + G 
Sbjct:  381 VPLVLQGVAYSVFAAALWPSVPYVVEAKHVGTAYGAITAIQNIGLALFPLAVAAEFN-HDDRYIPGVELLFVSFGVLGSLVGIALNVVDYQNGS 473          
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|1183504706|gb|ORZ28274.1| (major facilitator superfamily domain-containing protein [Lobosporangium transversale])

HSP 1 Score: 97.0561 bits (240), Expect = 7.587e-21
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 0
Query:    6 SLSPAVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGG 104
            +++P + +   GLAYS FA+VLWP +PF V + ++G AYGL T   N  L +FP++ A+I       Y PHVE LF+ LA++ LA  + LN+LDSR GG
Sbjct:  435 TITPIIGMFILGLAYSLFASVLWPCIPFLVNDHQLGTAYGLVTIALNISLTIFPMIVASILDVTNGSY-PHVEGLFISLAIIALALSIILNILDSRHGG 532          
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|953495891|emb|CEG42787.1| (major facilitator superfamily [Plasmopara halstedii])

HSP 1 Score: 95.5153 bits (236), Expect = 2.236e-20
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   11 VPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGG 104
            VPL+ QG+AYS FAA LWPSVPF V    VG AYG  TAIQN GLALFPL  A+ +    + YIP VELLF    ++G   G+ LNV+D + G 
Sbjct:  413 VPLLLQGVAYSVFAAALWPSVPFVVEAKHVGTAYGAITAIQNIGLALFPLAVASEFN-HNNRYIPGVELLFASFGLLGSIVGVALNVVDFQNGS 505          
BLAST of EWM22869.1 vs. NCBI_GenBank
Match: gi|669159652|ref|XP_008615388.1| (hypothetical protein SDRG_11138 [Saprolegnia diclina VS20] >gi|530732973|gb|EQC31215.1| hypothetical protein SDRG_11138 [Saprolegnia diclina VS20])

HSP 1 Score: 93.9745 bits (232), Expect = 9.053e-20
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   11 VPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSRGGG 104
            VPLV QG+AY  FAA LWPS+P+ V    VG AYG  T+IQN GLALFP++ A +Y    ++Y+P VE+LFV    +G   G+ LN++D + G 
Sbjct:  417 VPLVLQGVAYCVFAAALWPSIPYVVDARLVGSAYGAITSIQNLGLALFPMLVAMVYSVE-NKYLPSVEMLFVAFGALGSVAGILLNIVDYKNGS 509          
The following BLAST results are available for this feature:
BLAST of EWM22869.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103518|gb|EWM22869.1|4.944e-91100.00major facilitator superfamily [Nannochloropsis gad... [more]
gi|224001012|ref|XP_002290178.1|7.915e-3060.20transporter belonging to the MFS superfamily [Thal... [more]
gi|397589060|gb|EJK54515.1|3.813e-2455.56hypothetical protein THAOC_25852 [Thalassiosira oc... [more]
gi|219112637|ref|XP_002178070.1|7.266e-2448.51predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|301122213|ref|XP_002908833.1|1.127e-2158.51Major Facilitator Superfamily (MFS) [Phytophthora ... [more]
gi|675191731|ref|XP_008904750.1|1.322e-2158.51hypothetical protein PPTG_10966 [Phytophthora para... [more]
gi|695428013|ref|XP_009529845.1|1.576e-2158.51hypothetical protein PHYSODRAFT_560629 [Phytophtho... [more]
gi|1183504706|gb|ORZ28274.1|7.587e-2146.46major facilitator superfamily domain-containing pr... [more]
gi|953495891|emb|CEG42787.1|2.236e-2055.32major facilitator superfamily [Plasmopara halstedi... [more]
gi|669159652|ref|XP_008615388.1|9.053e-2050.00hypothetical protein SDRG_11138 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7826rna7826Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications