EWM22902.1, cds7771 (CDS) Nannochloropsis gaditana

Overview
NameEWM22902.1
Unique Namecds7771
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:395645..396520 +

Link to JBrowse

Properties
Property NameValue
Start range395645
Start range.
Protein idEWM22902.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100784g2.6248.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:395645..396520 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22902.1 vs. NCBI_GenBank
Match: gi|585103574|gb|EWM22902.1| (hypothetical protein Naga_100784g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0 
Query:    1 PLYCLSRCLSSAFPPCSGLLFPPCVFFGPIPRSGFSLPLPLSSPPLSRPPPLPPSHPASFLAIGCFRPLPPTCRPLCAVSLMSLPCHPDRPSSFLFPLLSPIVQDDERRRKDVQTFFALRVRDPRAILISALPSSLPLSLFPLSFLCVSPTFPVPACPPSPSSPPTIALFSLSFRPQCFKPTSYPPSLPPSLSLSRQMPSPPFPPGPGEIGLRLIWRSFGRIIVGSWRNTCQRNWYGSFSLFSSLFPPLPSPVITMILAAKGPELTEMEDLLHVFPCHTSYFVWSVRVMRS 291
            PLYCLSRCLSSAFPPCSGLLFPPCVFFGPIPRSGFSLPLPLSSPPLSRPPPLPPSHPASFLAIGCFRPLPPTCRPLCAVSLMSLPCHPDRPSSFLFPLLSPIVQDDERRRKDVQTFFALRVRDPRAILISALPSSLPLSLFPLSFLCVSPTFPVPACPPSPSSPPTIALFSLSFRPQCFKPTSYPPSLPPSLSLSRQMPSPPFPPGPGEIGLRLIWRSFGRIIVGSWRNTCQRNWYGSFSLFSSLFPPLPSPVITMILAAKGPELTEMEDLLHVFPCHTSYFVWSVRVMRS
Sbjct:    1 PLYCLSRCLSSAFPPCSGLLFPPCVFFGPIPRSGFSLPLPLSSPPLSRPPPLPPSHPASFLAIGCFRPLPPTCRPLCAVSLMSLPCHPDRPSSFLFPLLSPIVQDDERRRKDVQTFFALRVRDPRAILISALPSSLPLSLFPLSFLCVSPTFPVPACPPSPSSPPTIALFSLSFRPQCFKPTSYPPSLPPSLSLSRQMPSPPFPPGPGEIGLRLIWRSFGRIIVGSWRNTCQRNWYGSFSLFSSLFPPLPSPVITMILAAKGPELTEMEDLLHVFPCHTSYFVWSVRVMRS 291
[Close]
BLAST of EWM22902.1 vs. NCBI_GenBank
Match: gi|553191387|ref|XP_005855372.1| (hypothetical protein NGA_0118300 [Nannochloropsis gaditana CCMP526] >gi|422293690|gb|EKU20990.1| hypothetical protein NGA_0118300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 77.411 bits (189), Expect = 4.001e-15
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0 
Query:   82 MSLPCHPDRPSSFLFPLLSPIVQDDERRRKDVQTFFALR 120
            MSLPCHPDRPSS LFPLLSPIVQDDERRRKDVQTFFALR
Sbjct:    1 MSLPCHPDRPSSCLFPLLSPIVQDDERRRKDVQTFFALR 39
The following BLAST results are available for this feature:
BLAST of EWM22902.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103574|gb|EWM22902.1|0.000e+0100.00hypothetical protein Naga_100784g2, partial [Nanno... [more]
gi|553191387|ref|XP_005855372.1|4.001e-1597.44hypothetical protein NGA_0118300 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7792rna7792Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications