EWM22909.1, cds7764 (CDS) Nannochloropsis gaditana

Overview
NameEWM22909.1
Unique Namecds7764
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:378264..378363 +
Alignment locationCM002473.1:378648..378690 +
Alignment locationCM002473.1:378859..378945 +
Alignment locationCM002473.1:379224..379338 +
Alignment locationCM002473.1:379608..379676 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22909.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100625g2.4759.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:378264..378363 +
CM002473.1supercontigCM002473.1:378648..378690 +
CM002473.1supercontigCM002473.1:378859..378945 +
CM002473.1supercontigCM002473.1:379224..379338 +
CM002473.1supercontigCM002473.1:379608..379676 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22909.1 vs. NCBI_GenBank
Match: gi|585103587|gb|EWM22909.1| (hypothetical protein Naga_100625g2 [Nannochloropsis gaditana])

HSP 1 Score: 289.271 bits (739), Expect = 3.869e-99
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MKLSIPSLFLACAVFTLGKGTVNAGSMRGAEKKVNGEKLKMLIDCFASYMEDASYRADNSKRDGCTDAEILYCRTDSGYNDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCVAAL 137
            MKLSIPSLFLACAVFTLGKGTVNAGSMRGAEKKVNGEKLKMLIDCFASYMEDASYRADNSKRDGCTDAEILYCRTDSGYNDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCVAAL
Sbjct:    1 MKLSIPSLFLACAVFTLGKGTVNAGSMRGAEKKVNGEKLKMLIDCFASYMEDASYRADNSKRDGCTDAEILYCRTDSGYNDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCVAAL 137
[Close]
BLAST of EWM22909.1 vs. NCBI_GenBank
Match: gi|553191375|ref|XP_005855369.1| (hypothetical protein NGA_0118000 [Nannochloropsis gaditana CCMP526] >gi|422293687|gb|EKU20987.1| hypothetical protein NGA_0118000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 211.46 bits (537), Expect = 8.100e-69
Identity = 107/137 (78.10%), Postives = 107/137 (78.10%), Query Frame = 0 
Query:    1 MKLSIPSLFLACAVFTLGKGTVNAGSMRGAEKKVNGEKLKMLIDCFASYMEDASYRADNSKRDGCTDAEILYCRTDSGYNDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCVAAL 137
            MKLSIPSLFLACAVFTLGKGTVNAGSMRGAEKKVNGEKLKMLIDCFA                             SGY DHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCVAAL
Sbjct:    1 MKLSIPSLFLACAVFTLGKGTVNAGSMRGAEKKVNGEKLKMLIDCFA-----------------------------SGYKDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCVAAL 108
The following BLAST results are available for this feature:
BLAST of EWM22909.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103587|gb|EWM22909.1|3.869e-99100.00hypothetical protein Naga_100625g2 [Nannochloropsi... [more]
gi|553191375|ref|XP_005855369.1|8.100e-6978.10hypothetical protein NGA_0118000 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7785rna7785Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications