EWM22920.1, cds7753 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM22920.1 vs. NCBI_GenBank
Match: gi|585103616|gb|EWM22920.1| (hypothetical protein Naga_101147g1 [Nannochloropsis gaditana]) HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query: 1 MYYRHGHTRTWEASRGIVSAEQMRTTAPLSPSSPSHASFLLPLLFLVHVCRQKKKMVPASKALKGALVAALASASLGLAAPVDPTTPVAPLEATTAIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVTAFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAAVPVAAEGGVEVPAEGGVEVPMEDGVATVFPLETRKIALEDSPMMPPVKKEVLGEEPTGAGPEIVPNARRLASDKRGGRGASAGGRLWHLSERHREPDLVLGKRPGSHPKHGHLPRFPLQQRHGPCLRRPPSPGQCPRTDPAVARLVAYLGL 360
MYYRHGHTRTWEASRGIVSAEQMRTTAPLSPSSPSHASFLLPLLFLVHVCRQKKKMVPASKALKGALVAALASASLGLAAPVDPTTPVAPLEATTAIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVTAFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAAVPVAAEGGVEVPAEGGVEVPMEDGVATVFPLETRKIALEDSPMMPPVKKEVLGEEPTGAGPEIVPNARRLASDKRGGRGASAGGRLWHLSERHREPDLVLGKRPGSHPKHGHLPRFPLQQRHGPCLRRPPSPGQCPRTDPAVARLVAYLGL
Sbjct: 1 MYYRHGHTRTWEASRGIVSAEQMRTTAPLSPSSPSHASFLLPLLFLVHVCRQKKKMVPASKALKGALVAALASASLGLAAPVDPTTPVAPLEATTAIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVTAFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAAVPVAAEGGVEVPAEGGVEVPMEDGVATVFPLETRKIALEDSPMMPPVKKEVLGEEPTGAGPEIVPNARRLASDKRGGRGASAGGRLWHLSERHREPDLVLGKRPGSHPKHGHLPRFPLQQRHGPCLRRPPSPGQCPRTDPAVARLVAYLGL 360
BLAST of EWM22920.1 vs. NCBI_GenBank
Match: gi|585108878|gb|EWM26787.1| (hypothetical protein Naga_100018g13 [Nannochloropsis gaditana]) HSP 1 Score: 83.5741 bits (205), Expect = 9.095e-14 Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 0
Query: 96 AIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAP-LNAPGVT--AFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAA 209
AI G C Y+ G A +C + + L GF+ N G +CD+++ P L + T + WPDWASDASYE +F+ QMT+VG+T P + P +EIVS R C KDAA
Sbjct: 454 AIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPT--NTTPYIEIVSFRDC---KDAA 565 HSP 2 Score: 70.4774 bits (171), Expect = 1.575e-9 Identity = 42/131 (32.06%), Postives = 64/131 (48.85%), Query Frame = 0
Query: 82 VDPTTPVAPLEATTAIAPGECMSYQSGD--ANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVT--AFWPDWASDASYEKYFNLKQMTSVGLTATP---NADGSLPSVEIVSLRACDPT 205
VD + + P I G+C Y+ G A LCV+ + L FL N+GT LCD + P G T +FWPDWA + E Y Q+ ++G+T P ++ SLP +++V+ + C P+
Sbjct: 73 VDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPS 203 The following BLAST results are available for this feature:
BLAST of EWM22920.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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