EWM22920.1, cds7753 (CDS) Nannochloropsis gaditana

Overview
NameEWM22920.1
Unique Namecds7753
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:345560..345943 +
Alignment locationCM002473.1:346218..346674 +
Alignment locationCM002473.1:346755..346996 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22920.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101147g1.1289.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:345560..345943 +
CM002473.1supercontigCM002473.1:346218..346674 +
CM002473.1supercontigCM002473.1:346755..346996 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22920.1 vs. NCBI_GenBank
Match: gi|585103616|gb|EWM22920.1| (hypothetical protein Naga_101147g1 [Nannochloropsis gaditana])

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query:    1 MYYRHGHTRTWEASRGIVSAEQMRTTAPLSPSSPSHASFLLPLLFLVHVCRQKKKMVPASKALKGALVAALASASLGLAAPVDPTTPVAPLEATTAIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVTAFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAAVPVAAEGGVEVPAEGGVEVPMEDGVATVFPLETRKIALEDSPMMPPVKKEVLGEEPTGAGPEIVPNARRLASDKRGGRGASAGGRLWHLSERHREPDLVLGKRPGSHPKHGHLPRFPLQQRHGPCLRRPPSPGQCPRTDPAVARLVAYLGL 360
            MYYRHGHTRTWEASRGIVSAEQMRTTAPLSPSSPSHASFLLPLLFLVHVCRQKKKMVPASKALKGALVAALASASLGLAAPVDPTTPVAPLEATTAIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVTAFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAAVPVAAEGGVEVPAEGGVEVPMEDGVATVFPLETRKIALEDSPMMPPVKKEVLGEEPTGAGPEIVPNARRLASDKRGGRGASAGGRLWHLSERHREPDLVLGKRPGSHPKHGHLPRFPLQQRHGPCLRRPPSPGQCPRTDPAVARLVAYLGL
Sbjct:    1 MYYRHGHTRTWEASRGIVSAEQMRTTAPLSPSSPSHASFLLPLLFLVHVCRQKKKMVPASKALKGALVAALASASLGLAAPVDPTTPVAPLEATTAIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVTAFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAAVPVAAEGGVEVPAEGGVEVPMEDGVATVFPLETRKIALEDSPMMPPVKKEVLGEEPTGAGPEIVPNARRLASDKRGGRGASAGGRLWHLSERHREPDLVLGKRPGSHPKHGHLPRFPLQQRHGPCLRRPPSPGQCPRTDPAVARLVAYLGL 360          
BLAST of EWM22920.1 vs. NCBI_GenBank
Match: gi|585108878|gb|EWM26787.1| (hypothetical protein Naga_100018g13 [Nannochloropsis gaditana])

HSP 1 Score: 83.5741 bits (205), Expect = 9.095e-14
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 0
Query:   96 AIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAP-LNAPGVT--AFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAA 209
            AI  G C  Y+ G A   +C +       +   L GF+ N G   +CD+++ P L +   T  + WPDWASDASYE +F+  QMT+VG+T  P    + P +EIVS R C   KDAA
Sbjct:  454 AIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPT--NTTPYIEIVSFRDC---KDAA 565          

HSP 2 Score: 70.4774 bits (171), Expect = 1.575e-9
Identity = 42/131 (32.06%), Postives = 64/131 (48.85%), Query Frame = 0
Query:   82 VDPTTPVAPLEATTAIAPGECMSYQSGD--ANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVT--AFWPDWASDASYEKYFNLKQMTSVGLTATP---NADGSLPSVEIVSLRACDPT 205
            VD  + + P      I  G+C  Y+ G   A   LCV+       +   L  FL N+GT  LCD  + P    G T  +FWPDWA +   E Y    Q+ ++G+T  P   ++  SLP +++V+ + C P+
Sbjct:   73 VDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPS 203          
The following BLAST results are available for this feature:
BLAST of EWM22920.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103616|gb|EWM22920.1|0.000e+0100.00hypothetical protein Naga_101147g1 [Nannochloropsi... [more]
gi|585108878|gb|EWM26787.1|9.095e-1441.03hypothetical protein Naga_100018g13 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7774rna7774Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications