EWM22969.1, cds7705 (CDS) Nannochloropsis gaditana

Overview
NameEWM22969.1
Unique Namecds7705
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:179024..179129 +
Alignment locationCM002473.1:179317..180617 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22969.1
ProductAutophagy-related protein 17
Orig transcript idgnl|cribi|Naga_100102g4.80.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:179024..179129 +
CM002473.1supercontigCM002473.1:179317..180617 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0006914autophagy
Vocabulary: INTERPRO
TermDefinition
IPR007240Autophagy-rel_prot_17
Homology
BLAST of EWM22969.1 vs. NCBI_GenBank
Match: gi|585103702|gb|EWM22969.1| (Autophagy-related protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 893.649 bits (2308), Expect = 0.000e+0
Identity = 468/468 (100.00%), Postives = 468/468 (100.00%), Query Frame = 0
Query:    1 MEGLLTLLQDGDMCLTEARSSLLRSRELLDVFRHEAGRLLQRLSLLRAQVRALARLLHWVWAANNSLGPLERLPPDDAPFQTLEAVCDQLRQTRVDPELVAGERGHTLFDFLDEGAVTSLRAQAEADAREVCVLRERGLRAQASLEERLLCLEQAIRAALEGAGMLPGRDGEEEEEEEGGEEVEEEGEEERVEATWLWRVLAQNVRDQARAVAEMKAALVRAASAYARWRGEGGGKGADAASEGGAKDGKALGPCSPAKEEQELLRVLQSGMPRMRAWRRQMEEEVPALLHALRRALRELVAGEMAEAARESHGLVEGLEEDQARLTSLRAEAQSSAREVESLAAFYSRFALAYAQLRPELERRRRVLRETAEVVKEVEAGLRSREEEEAAARERFWEAHGRYLPQSLCPVVREPAESFRVVPSVEEARRRLSVLEAREEEGGGRGAEEGYGEGMWDARAGRKGGKAV 468
            MEGLLTLLQDGDMCLTEARSSLLRSRELLDVFRHEAGRLLQRLSLLRAQVRALARLLHWVWAANNSLGPLERLPPDDAPFQTLEAVCDQLRQTRVDPELVAGERGHTLFDFLDEGAVTSLRAQAEADAREVCVLRERGLRAQASLEERLLCLEQAIRAALEGAGMLPGRDGEEEEEEEGGEEVEEEGEEERVEATWLWRVLAQNVRDQARAVAEMKAALVRAASAYARWRGEGGGKGADAASEGGAKDGKALGPCSPAKEEQELLRVLQSGMPRMRAWRRQMEEEVPALLHALRRALRELVAGEMAEAARESHGLVEGLEEDQARLTSLRAEAQSSAREVESLAAFYSRFALAYAQLRPELERRRRVLRETAEVVKEVEAGLRSREEEEAAARERFWEAHGRYLPQSLCPVVREPAESFRVVPSVEEARRRLSVLEAREEEGGGRGAEEGYGEGMWDARAGRKGGKAV
Sbjct:    1 MEGLLTLLQDGDMCLTEARSSLLRSRELLDVFRHEAGRLLQRLSLLRAQVRALARLLHWVWAANNSLGPLERLPPDDAPFQTLEAVCDQLRQTRVDPELVAGERGHTLFDFLDEGAVTSLRAQAEADAREVCVLRERGLRAQASLEERLLCLEQAIRAALEGAGMLPGRDGEEEEEEEGGEEVEEEGEEERVEATWLWRVLAQNVRDQARAVAEMKAALVRAASAYARWRGEGGGKGADAASEGGAKDGKALGPCSPAKEEQELLRVLQSGMPRMRAWRRQMEEEVPALLHALRRALRELVAGEMAEAARESHGLVEGLEEDQARLTSLRAEAQSSAREVESLAAFYSRFALAYAQLRPELERRRRVLRETAEVVKEVEAGLRSREEEEAAARERFWEAHGRYLPQSLCPVVREPAESFRVVPSVEEARRRLSVLEAREEEGGGRGAEEGYGEGMWDARAGRKGGKAV 468          
BLAST of EWM22969.1 vs. NCBI_GenBank
Match: gi|553181757|ref|XP_005853619.1| (hypothetical protein NGA_0449801 [Nannochloropsis gaditana CCMP526] >gi|422295446|gb|EKU22745.1| hypothetical protein NGA_0449801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 257.684 bits (657), Expect = 1.219e-81
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0
Query:    1 MEGLLTLLQDGDMCLTEARSSLLRSRELLDVFRHEAGRLLQRLSLLRAQVRALARLLHWVWAANNSLGPLERLPPDDAPFQTLEAVCDQLRQTRVDPELVAGERGHTLFDFLDEGAVTSLRAQAEADAREV 131
            ME LLTLLQDGDMCLTEARSSLLRSRELLDV RHEAGRLLQRLSLLRAQVRALARLLHWVWAANNSLGPLERLPPDDAPFQTLEAVCDQLRQTRVDPELVAGERGHTLFDFLDEGAVTSLRAQAEADAREV
Sbjct:    1 MEDLLTLLQDGDMCLTEARSSLLRSRELLDVIRHEAGRLLQRLSLLRAQVRALARLLHWVWAANNSLGPLERLPPDDAPFQTLEAVCDQLRQTRVDPELVAGERGHTLFDFLDEGAVTSLRAQAEADAREV 131          
BLAST of EWM22969.1 vs. NCBI_GenBank
Match: gi|470504354|ref|XP_004348454.1| (hypothetical protein ACA1_157210 [Acanthamoeba castellanii str. Neff] >gi|440800974|gb|ELR21999.1| hypothetical protein ACA1_157210 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 67.3958 bits (163), Expect = 2.379e-8
Identity = 44/152 (28.95%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  272 MPRMRAWRRQMEEEVPALLHALRRALRELVAGEMAEAARESHGLVEGLEEDQARLTSLRAEAQSSAREVESLAAFYSRFALAYAQLRPELERRRRVLRETAEVVKEVEAGLRSREEEEAAARERFWEAHGRYLPQSLCPVVREPAESFRVVP 423
            + R++   +Q+E+         +RA +  V  +  +   +   +V  ++E +      R EA     E+ +L  +Y  F  AY +L  E+ERR    +   E+V   +  L    + E   RE F+E +GRYLPQSLCP V E A  + + P
Sbjct:  301 LQRIQESTKQIEDRCQKYATTFQRATQ--VFAQFEQFGVDVQEVVHQIDEHERAFEERRGEAAFLFEELANLTTWYELFGTAYEELLVEVERRHNEHKRMQEIVLAYQKELNVWYQVETQKRENFFEFYGRYLPQSLCPSVMENAPRYEIYP 450          
BLAST of EWM22969.1 vs. NCBI_GenBank
Match: gi|1022894451|ref|XP_016245468.1| (hypothetical protein PV07_08444 [Cladophialophora immunda] >gi|1022894453|ref|XP_016245469.1| hypothetical protein, variant [Cladophialophora immunda] >gi|759248585|gb|KIW25252.1| hypothetical protein PV07_08444 [Cladophialophora immunda] >gi|759248586|gb|KIW25253.1| hypothetical protein, variant [Cladophialophora immunda] >gi|1174598160|gb|OQV00306.1| hypothetical protein CLAIMM_05823 [Cladophialophora immunda])

HSP 1 Score: 62.3882 bits (150), Expect = 8.796e-7
Identity = 102/406 (25.12%), Postives = 155/406 (38.18%), Query Frame = 0
Query:   87 CDQLRQTRVDP--------ELVAGERGHTLFDFLDEGAVTSLRAQAEADAREVCVLRERGLRAQASLEERLLCLEQAIRAALEGAGMLPGRDGEEEEEEEGGEEVEEEGEEERVEATWLWRVLAQNVRDQARAVAEMKAALVRAAS--AYARWRGEGGGKGADAASEGG----AKDGKALG------PCSPAKEEQ--ELLRVLQSG---------------------MPRMRAWRRQMEEEVPALLHALRRALRELVAGEMAEAARESHGLVEGLEEDQARLTSLRAEAQSSAREVESLAAFYSRFALAYAQLRPELERRRRVLRETAEVVKEVEAGLRSREEEEAAARERFWEAHGRYLP-------QSLCP---VVREPAESFRVVP-----SVEEARRRLSV 434
             D L+QTR++         EL AG    TL DF+D+  V +++   E     V   +     +  +LE+ L    Q++   L G G L G D E ++                   T +   L   + D AR +AE   +LV+       A    EGGG+        G      D  +LG      P  P  EE+  E+L+VL++                      + ++  W  + E     +  A +  L E V+G ++       G V  +     +    +A+ +     +E L  +Y+ F  AY  L  E+ RRR V ++   VV E  A L    + +   R  F    G YLP        +L P   +VR   E    VP     +VEEA RRL V
Sbjct:  130 IDLLKQTRIEDAFKPATEGELDAGPGKETLHDFVDDNGVETIKQAMEIAIDNVQNAQNEMGHSIQTLEDDL----QSVNEVLNGRGELSGTDSELQQ------------------PTTIAGTLTL-LEDHARIMAEELESLVKHFDLCVTAIKHTEGGGEALFQTMNAGEGVDLPDAVSLGMDELRAPAQPMNEEERLEMLQVLENDAQEVDEVVMELQDRHAEMEAQLDKIHQWCERQENAYADVATAFK--LLEKVSGRLS-------GYVAEIARQALKWNEEKAKIEDGIGGMEELCEYYANFLHAYDGLIVEVARRRTVKKQMERVVAEAHAQLEQMYDSDRELRLEFKNDLGEYLPSDIWSGVNTLPPRYSIVRADEEDVGSVPELPRRTVEEALRRLKV 503          
The following BLAST results are available for this feature:
BLAST of EWM22969.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103702|gb|EWM22969.1|0.000e+0100.00Autophagy-related protein 17 [Nannochloropsis gadi... [more]
gi|553181757|ref|XP_005853619.1|1.219e-8198.47hypothetical protein NGA_0449801 [Nannochloropsis ... [more]
gi|470504354|ref|XP_004348454.1|2.379e-828.95hypothetical protein ACA1_157210 [Acanthamoeba cas... [more]
gi|1022894451|ref|XP_016245468.1|8.796e-725.12hypothetical protein PV07_08444 [Cladophialophora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7726rna7726Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications