EWM22975.1, cds7699 (CDS) Nannochloropsis gaditana

Overview
NameEWM22975.1
Unique Namecds7699
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:167153..167323 +
Alignment locationCM002473.1:167409..167528 +
Alignment locationCM002473.1:167664..167859 +

Link to JBrowse

Properties
Property NameValue
End range.
End range167859
Protein idEWM22975.1
ProductPyridoxal phosphate-dependent enzyme, beta subunit
Partialtrue
Orig transcript idgnl|cribi|Naga_100586g1.85.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:167153..167323 +
CM002473.1supercontigCM002473.1:167409..167528 +
CM002473.1supercontigCM002473.1:167664..167859 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001926TrpB-like_PLP-dep
Homology
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|585103712|gb|EWM22975.1| (Pyridoxal phosphate-dependent enzyme, beta subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 330.487 bits (846), Expect = 1.196e-114
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPVVADVTRSQPRPPCR 162
            MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPVVADVTRSQPRPPCR
Sbjct:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPVVADVTRSQPRPPCR 162          
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|299470275|emb|CBN79579.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 214.927 bits (546), Expect = 7.344e-65
Identity = 101/153 (66.01%), Postives = 126/153 (82.35%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPVVADVT 153
            +AASAGNHALAL+WHG QLGIPV+V MP +APL KV+KC+ FG NV+  GQHI EAKD A S P+++G++YINGYDD EIVAGAGT+G+E+LEQ+  VDY++VPVGGAGL+AG++LA KTL+PE KV+GVEP  C S  +AL  G PV A+ T
Sbjct:  144 IAASAGNHALALAWHGTQLGIPVTVVMPTIAPLTKVNKCKAFGVNVVQFGQHILEAKDHATSAPQFKGMRYINGYDDVEIVAGAGTMGMEILEQVPDVDYIVVPVGGAGLIAGIALATKTLQPEVKVLGVEPHFCPSLTAALKAGKPVHAETT 296          
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|676380175|ref|XP_009033366.1| (hypothetical protein AURANDRAFT_20121 [Aureococcus anophagefferens] >gi|323456445|gb|EGB12312.1| hypothetical protein AURANDRAFT_20121 [Aureococcus anophagefferens])

HSP 1 Score: 192.2 bits (487), Expect = 1.774e-56
Identity = 93/150 (62.00%), Postives = 116/150 (77.33%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQI---SKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHP 147
            +AASAGNHALALSWHG QLG+PVSV MP VAP+AK  KC  FGA++++ G  IG+AK  A +   +  + Y+NGYDD  I+AGAGT+G+E++EQ+      DYV+VP GGAGLLAGVSLAIKTLRP+ +V+GVEP+NC SF  AL  GHP
Sbjct:   78 VAASAGNHALALSWHGKQLGVPVSVLMPTVAPMAKRSKCATFGAHIVVHGDTIGDAKLHAETTAPFCDMTYVNGYDDVPIIAGAGTLGLELIEQLPEGDHFDYVMVPCGGAGLLAGVSLAIKTLRPQTRVVGVEPRNCASFSHALAVGHP 227          
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|926624959|ref|XP_013777957.1| (PREDICTED: L-threonine ammonia-lyase-like [Limulus polyphemus])

HSP 1 Score: 188.348 bits (477), Expect = 3.547e-55
Identity = 84/148 (56.76%), Postives = 119/148 (80.41%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPV 148
            +AASAGNHALALS+HG +LGIPV+V MP++AP+ K+  CR+FGA +II G  IGE+K+ A+   +  G+ Y+NGYD P I+AG GT+G+E+++Q+  +D V+VP+GG GL+AGV+LA+K+L+PE KVIGVE + C SF +A++ GHPV
Sbjct:   89 IAASAGNHALALSYHGQKLGIPVTVVMPIIAPIMKITMCRQFGAKIIIKGADIGESKEHAMQLSKENGLVYVNGYDHPHIIAGQGTMGLEIIDQVPDLDAVVVPIGGGGLIAGVALAVKSLKPEVKVIGVESERCPSFTAAMNAGHPV 236          
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|219116154|ref|XP_002178872.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409639|gb|EEC49570.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 187.193 bits (474), Expect = 2.710e-54
Identity = 99/153 (64.71%), Postives = 123/153 (80.39%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPVVADVT 153
            +AASAGNHA AL++HG  LG+P +V MP VAPLAKVDKCRKFGA VII G HIGEAK+FA +    EG++Y+NGYDDP I+AGAGTIG+E+++ +  VD V+VP+GGAGL+AG+S AIKTL+P+ KVIGVEPK C S+ +AL  G PV A  T
Sbjct:  143 IAASAGNHAQALAYHGRSLGVPATVVMPTVAPLAKVDKCRKFGARVIIKGSHIGEAKEFAETLVASEGLEYVNGYDDPPILAGAGTIGMEMIDDVPDVDVVVVPIGGAGLIAGISCAIKTLKPDTKVIGVEPKFCASYTAALRAGKPVPAPFT 295          
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|514686032|ref|XP_004990594.1| (hypothetical protein PTSG_12710 [Salpingoeca rosetta] >gi|326431680|gb|EGD77250.1| hypothetical protein PTSG_12710 [Salpingoeca rosetta])

HSP 1 Score: 186.808 bits (473), Expect = 4.832e-54
Identity = 90/155 (58.06%), Postives = 116/155 (74.84%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPVVADVTRS 155
            +AASAGNHAL L++HG  LGIPV++ MPV APL KV+ CR FGANVII+G HIGE+   A    E +G++YINGY+D  I+AG GT G+E+LEQ+  VD +IVPVGG GL+AGVSLA+KT++   ++IGVE   C SF  A+  GHPV  +VT +
Sbjct:  148 IAASAGNHALGLAYHGQDLGIPVTLVMPVFAPLTKVENCRSFGANVIISGAHIGESMVVAKEIAEKQGLQYINGYNDAAIIAGQGTAGLEILEQVPDVDAIIVPVGGGGLIAGVSLAVKTIQKNVQIIGVESVACPSFSEAMKAGHPVPVEVTST 302          
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|1210514784|dbj|GAX26263.1| (threonine dehydratase [Fistulifera solaris])

HSP 1 Score: 185.652 bits (470), Expect = 8.448e-54
Identity = 99/153 (64.71%), Postives = 123/153 (80.39%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPVVADVT 153
            +AASAGNHALAL++HG +LG+PV+V MP VAP+AKVDKCRKFGA +II GQHIG+AK++A    E E + YINGYDDP I+AGAGTIG+E++  +  VD V+VPVGGAGL+AG+S AIKTL+P  KVIGVEP+ C S+ +AL  G PV A  T
Sbjct:  121 IAASAGNHALALAYHGKELGVPVTVVMPSVAPMAKVDKCRKFGARIIIEGQHIGQAKEYAEMLVEKEDLHYINGYDDPPILAGAGTIGMEIMNDVPCVDVVVVPVGGAGLIAGISCAIKTLKPCVKVIGVEPEFCASYTAALKAGRPVPAPFT 273          
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|470300956|ref|XP_004347057.1| (threonine dehydratase [Capsaspora owczarzaki ATCC 30864] >gi|765554169|gb|KJE94790.1| threonine dehydratase [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 185.267 bits (469), Expect = 9.398e-54
Identity = 87/148 (58.78%), Postives = 114/148 (77.03%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPV 148
            +AASAGNHALAL++HG  L IPV+V MP+ APL KV KC+ FGA VII G+HIGE+KD A+   +   + Y+NGYD P I+AG GT+G+E+L ++  +D V+VP+GGAGL+AGV+LAIKT+RPE  VIGVEP+   S+ +AL  G PV
Sbjct:  114 IAASAGNHALALAYHGNDLKIPVTVVMPIHAPLMKVAKCKNFGATVIIKGEHIGESKDVAMQIAKAHNLTYVNGYDHPHIIAGQGTMGVEILNEMENIDAVVVPIGGAGLIAGVALAIKTIRPEVMVIGVEPERAASYTAALKAGKPV 261          
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|1210511652|dbj|GAX29466.1| (threonine dehydratase [Fistulifera solaris])

HSP 1 Score: 184.882 bits (468), Expect = 1.585e-53
Identity = 99/153 (64.71%), Postives = 123/153 (80.39%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPVVADVT 153
            +AASAGNHALAL++HG +LG+PV+V MP VAP+AKVDKCRKFGA +II GQHIG+AK++A    E E + YINGYDDP I+AGAGTIG+E++  +  VD V+VPVGGAGL+AG+S AIKTL+P  KVIGVEP+ C S+ +AL  G PV A  T
Sbjct:  123 IAASAGNHALALAYHGKELGVPVTVVMPSVAPMAKVDKCRKFGARIIIEGQHIGQAKEYAEMLVEKEDLHYINGYDDPPILAGAGTIGMEIMNDVPCVDVVVVPVGGAGLIAGISCAIKTLKPCVKVIGVEPEFCASYTAALRAGKPVPAPFT 275          
BLAST of EWM22975.1 vs. NCBI_GenBank
Match: gi|560121766|emb|CDJ93619.1| (Pyridoxal phosphate-dependent enzyme and Amino acid-binding ACT domain containing protein [Haemonchus contortus])

HSP 1 Score: 185.267 bits (469), Expect = 1.787e-53
Identity = 87/152 (57.24%), Postives = 115/152 (75.66%), Query Frame = 0
Query:    1 MAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDFALSNPEYEGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQSALDHGHPVVADV 152
            +AASAGNHALAL +HG QL IPV+V MPV APL K+  CR FGA +I+ G  IG AKD A+   + +  KYINGYD P I+AGAGTIG+E+LEQ+  VD +++PVGGAGL+AG+++A+K L+P+ ++IGVE   C SFQ+AL  G PV  ++
Sbjct:  146 IAASAGNHALALCYHGQQLNIPVTVVMPVFAPLMKIGMCRSFGATIILKGDDIGMAKDHAMRLVKEKKYKYINGYDHPNILAGAGTIGLEILEQVPDVDAILIPVGGAGLIAGIAVAVKKLKPQVEIIGVESDTCPSFQAALKAGKPVKVNI 297          
The following BLAST results are available for this feature:
BLAST of EWM22975.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103712|gb|EWM22975.1|1.196e-114100.00Pyridoxal phosphate-dependent enzyme, beta subunit... [more]
gi|299470275|emb|CBN79579.1|7.344e-6566.01conserved unknown protein [Ectocarpus siliculosus][more]
gi|676380175|ref|XP_009033366.1|1.774e-5662.00hypothetical protein AURANDRAFT_20121 [Aureococcus... [more]
gi|926624959|ref|XP_013777957.1|3.547e-5556.76PREDICTED: L-threonine ammonia-lyase-like [Limulus... [more]
gi|219116154|ref|XP_002178872.1|2.710e-5464.71predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|514686032|ref|XP_004990594.1|4.832e-5458.06hypothetical protein PTSG_12710 [Salpingoeca roset... [more]
gi|1210514784|dbj|GAX26263.1|8.448e-5464.71threonine dehydratase [Fistulifera solaris][more]
gi|470300956|ref|XP_004347057.1|9.398e-5458.78threonine dehydratase [Capsaspora owczarzaki ATCC ... [more]
gi|1210511652|dbj|GAX29466.1|1.585e-5364.71threonine dehydratase [Fistulifera solaris][more]
gi|560121766|emb|CDJ93619.1|1.787e-5357.24Pyridoxal phosphate-dependent enzyme and Amino aci... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7720rna7720Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications