EWM22988.1, cds7686 (CDS) Nannochloropsis gaditana

Overview
NameEWM22988.1
Unique Namecds7686
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:137438..137753 -
Alignment locationCM002473.1:137066..137244 -
Alignment locationCM002473.1:136380..136820 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22988.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101129g2.1202.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:137438..137753 -
CM002473.1supercontigCM002473.1:137066..137244 -
CM002473.1supercontigCM002473.1:136380..136820 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|585103737|gb|EWM22988.1| (hypothetical protein Naga_101129g2 [Nannochloropsis gaditana])

HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0
Query:    1 MHRFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPSFPTCFATAKRREQKRFHRAHWQGGGLILLGIGVAMAPTVHVAFWHRQTDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLEDGEFF 311
            MHRFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPSFPTCFATAKRREQKRFHRAHWQGGGLILLGIGVAMAPTVHVAFWHRQTDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLEDGEFF
Sbjct:    1 MHRFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPSFPTCFATAKRREQKRFHRAHWQGGGLILLGIGVAMAPTVHVAFWHRQTDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLEDGEFF 311          
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|553185531|ref|XP_005854262.1| (hypothetical protein NGA_0180900 [Nannochloropsis gaditana CCMP526] >gi|422294797|gb|EKU22097.1| hypothetical protein NGA_0180900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 296.975 bits (759), Expect = 4.063e-99
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query:  169 MGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLEDGEFF 311
            MGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLEDGEFF
Sbjct:    1 MGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLEDGEFF 143          
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|299472495|emb|CBN77280.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 134.035 bits (336), Expect = 8.534e-33
Identity = 103/323 (31.89%), Postives = 152/323 (47.06%), Query Frame = 0
Query:    1 MHRFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPSFPTCFATAKRREQKRFHRAHWQGGGLILLGIGVAM----------APTVHVAFWHRQTD--------------IGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWDPYGATDLGTAVSDLCLCLFTARSIPP-GRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLY-RTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDT 297
            M  FP   + ++A+LD L LV M+VA A   P LTVL +Q + PF             C A +     +R+ R    G  +I LG  VA+            T+H      + D               G NT+ YVL CLPAAVS + K+ A+ +  +P++ + L+L +  ++ V + + +P  Y+LQ LG   D  G T +G A+ D   CL   R +     YP++ EC       F Y++ TLLV   V  V+       +Y R +  SV  AF+AL  Y+  +W   S    NVF   GL +++ G+  YHS PEP+ 
Sbjct:   54 MQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPF-------------CLAVSGGFCSRRYPRKSVLGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVEGYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQFLGRHGD--GNTHVGQALRDGWRCLVLMRDVVDIDGYPVDAECWAGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVALCFYNEAEWLHDS---FNVFTVSGLIVIMIGLRLYHSVPEPED 358          
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|1210530939|dbj|GAX10479.1| (hypothetical protein FisN_21Lh177 [Fistulifera solaris])

HSP 1 Score: 110.923 bits (276), Expect = 1.098e-23
Identity = 64/207 (30.92%), Postives = 107/207 (51.69%), Query Frame = 0
Query:  103 TDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWD---PYGATDLGTAVSDLCLCLFT--ARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFS 304
            T   INTL YV  C+PAA+  L KE   ++F QP+N  YLNLLL  +QF++  V+SPL + LQGLG   D    Y +T      SD   C     + +    +YP    C Y+ L   +++   +LV  AV+ ++ +G  +++YR ++  + ++ L +  Y +N   +     ++  +   L L++ G E YH     D+   T+++
Sbjct:  318 TRTAINTLLYVSSCIPAAIVTLYKEHVFLQFKQPVNMNYLNLLLATFQFIVASVMSPLLFVLQGLGAHGDWTEQYPSTQFSENYSDGVQCFVGGLSETDQESKYPESAFCDYSLLLVLIHVTSVVLVGVAVDKIVNAGATKVMYRGVSAGIIVSVLCMHFYDMNIPDFNYGPVIDGLNLFCLILLILGSEVYHRVTLQDSTFETEYA 524          
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|1210524476|dbj|GAX16734.1| (hypothetical protein FisN_21Hh177 [Fistulifera solaris])

HSP 1 Score: 109.768 bits (273), Expect = 2.785e-23
Identity = 65/208 (31.25%), Postives = 108/208 (51.92%), Query Frame = 0
Query:  103 TDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWD---PYGATDLGTAVSDLCLCLFTAR---SIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFS 304
            T   INTL YV  C+PAA+  L KE   +++ QP+N  YLNLLL  +QF++  V+SPL + LQGLG   D    Y +T      SD   C F  R   +    +YP    C Y+ L   +++   +LV  AV+ ++ +G  +++YR ++  + ++ L +  Y +N   +     ++  +   L L++ G E YH     D+   T+++
Sbjct:  318 TRTAINTLLYVSSCVPAAIVTLYKEHVFLQYKQPVNMNYLNLLLATFQFIVASVMSPLLFVLQGLGAHGDWTEQYPSTQFSENYSDGVRC-FVGRLSETDQESKYPESAFCDYSLLLVIIHVTSVVLVGVAVDKIVNAGATKVMYRGVSAGIIVSVLCMHFYDMNIPDFNYGPVIDGLNLFCLILLILGSEVYHRVTLQDSTFETEYA 524          
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|669142452|ref|XP_008606788.1| (hypothetical protein SDRG_02955 [Saprolegnia diclina VS20] >gi|530741274|gb|EQC39516.1| hypothetical protein SDRG_02955 [Saprolegnia diclina VS20])

HSP 1 Score: 97.4413 bits (241), Expect = 2.407e-19
Identity = 78/306 (25.49%), Postives = 143/306 (46.73%), Query Frame = 0
Query:    3 RFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPSFPTCFATAKRREQKRFHRAHWQGGGLILLGIGVAMAPTVHVAFW--HRQTDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLE 306
             FP+    ++ +LD    +++ + G  TP  LTV+F+QA++P  +L              A+   +  + + H  GG +++ GI V + P   +     + + ++  N+L Y+L  +P A+S L KE+A+    QP++ YYLN  + +YQF+  L+++PL + +  L +     G   L   VS++       R+          +C        L+++C ++  F V  VL   +  +LY     ++ +AF+ L  Y  ++   +SS   + F      +VL G+  Y   PEP  E  T  + E
Sbjct:   92 EFPKSKFFVMGMLDLAQSMLLFLPGGKTPATLTVIFLQASVPATMLF-------------AQILLKDEYSKFHVLGGSIMMAGILVGLLPVFSMVLSDVYEEQEMAWNSLCYLLAAIPGALSVLYKEKALA--TQPMDVYYLNAWVAVYQFIGGLLVAPLAFDIPALHLDQRISGLECLVNGVSEI-------RT---------DKCHLGLGLLLLFLVCKVVAFFGVGFVLQHTSVSVLYSGYTAALPMAFVLLEWYQQDQDGPLSSVWSDAF---SCAVVLLGLVLYRLNPEPGMEATTMSAAE 363          
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|673045271|ref|XP_008876596.1| (hypothetical protein H310_11639 [Aphanomyces invadans] >gi|574467629|gb|ETV94651.1| hypothetical protein H310_11639 [Aphanomyces invadans])

HSP 1 Score: 93.2041 bits (230), Expect = 8.577e-18
Identity = 78/309 (25.24%), Postives = 142/309 (45.95%), Query Frame = 0
Query:    1 MHRFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPSFPTCFATAKRREQKRFHRAHWQGGGLILLG--IGVAMAPTVHVAFWHRQTDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVF-DFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLE 306
            ++ FP+    ++A+LD L  +++ +   +TPP LTV+F+QAT+PF +L      S+             ++ R    GG L+  G  +G+     +  +    + ++G ++L Y+L  +P A+S L KEQA+    QP++ YYLN  + +YQF+   +L+PL + +  L +     G   L    S++       R+          +C         ++ C + + + V  V+   +P +LY     +  L F  L  Y  +  A  S      + D++   +V  G+  +   PEP TE  T+ + E
Sbjct:   90 VNEFPKYKFFIMAVLDLLHAMLLFIPAGNTPPALTVIFVQATVPFSMLFGYLFHSY-------------QYSRMQIVGGILMTSGLMLGILPLLLLLASDVFEEAEMGWHSLCYLLAAIPGALSMLYKEQALA--PQPMDVYYLNAWVAVYQFIGGFLLAPLIFDIPTLHLDQRISGLECLVNGSSEV-------RT---------DKCHMGLALLAAFLACKVGLFYGVGYVMNHTSPGVLYTAFTLAFPLGFFVLDTYQSSGQADDSDVTTARWMDYLSFMVVFLGLVVFRMTPEPSTEATTRSAAE 367          
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|1173934804|gb|OQR86037.1| (Drug/Metabolite Transporter (DMT) Superfamily [Achlya hypogyna])

HSP 1 Score: 91.6633 bits (226), Expect = 2.677e-17
Identity = 82/315 (26.03%), Postives = 145/315 (46.03%), Query Frame = 0
Query:    3 RFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPSFPTCFATAKRREQKRFHRAHWQGGGLILLGIGVAMAPTVHVAFWH--RQTDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQG----LGMGWDP---YGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVF-DFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLED 307
             FP+    ++ +LD L  +++ +AG  TP  LTV+FMQA++P  +LL             A+    + + +    G  ++  G+ V + P   +       + ++  N+  Y+L  +P A+S L KE+A+    QP++ YYLN  + +YQF+  L+L+PL + +      L MG  P   + A  L   +S L   +     I   +      C        +++LC ++  F +  VL   +   LY +   ++ +AF+ LA Y V+  +   S   + + D +   +VL G+  Y   PEP  E  T  + E 
Sbjct:   92 EFPKSKFFVMGMLDLLQSMLLYLAGGKTPATLTVVFMQASIPMTMLL-------------AQLFLNEEYSKYQVIGASIMSAGLLVGLVPVFSMVLSDVFEEQEMAWNSFCYLLAAIPGALSVLYKERALA--TQPMDVYYLNAWVAVYQFIGGLLLAPLAFDIPVPFPLLNMG--PILLFQALHLDQRISGLECLVNGVSEIRTDK------CHLGLGILVVFLLCKVVAFFGIGFVLRHTSVPTLYGSYVLALPIAFIVLAWYQVSGQSDQDSSLSSAWSDIVSCAIVLFGLVLYRLSPEPGMEATTMSAAEK 383          
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|1072224802|gb|OEU09551.1| (hypothetical protein FRACYDRAFT_248403 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 89.3521 bits (220), Expect = 2.982e-16
Identity = 85/343 (24.78%), Postives = 153/343 (44.61%), Query Frame = 0
Query:    5 PRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSS-CPPS--FPTCFATAKRREQKR------------------FHRAHWQGGGLILLGIGVAMAPTVHV----AFWHRQT------DIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWD---PYGATDLGTAVSDLCLCLFTARSIPPGR--YPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSLEDGEFF 311
            P   + L+ALLDTL + ++ + G    P LTV+ +Q TLP   ++S    P   F  C    ++++Q+                       H  G  +I L + +A+ P+++      F+   T         +NTL +V  C+PAA SQL KE   +++ QP+   YLN +L ++Q +   ++SPL Y L G     D    Y +++     ++   C     S    +  Y  E +C        +Y    + V  AV+ ++  G  +++YR ++  +  + ++L VY ++   +    A++  + + + L++ G E YH     D    T + LE   FF
Sbjct:  199 PIVDVGLMALLDTLHMQLVFLTGYHVAPTLTVILVQFTLPLTAMISQFVHPDGYFKKCCGQQQQQQQQPQINDVYDNTGQPLPGYGGLSIEHISGSIIISLAVLLALYPSIYTLIDKDFFRYATITEIPLQTALNTLLFVSSCIPAAASQLYKEHIFLQYKQPVQPDYLNFVLSLFQIIFASIMSPLVYTLLGFAAADDWPKLYPSSEFSKNFAEGFQCFIGILSSEREKHGYHDEADCSRTFPLLIMYCFSVISVGVAVDKIVNGGATKVMYRGVSIGIIFSVISLYVYDLHIPDFSYGIAIDSLNLVCVLLLVIGSEVYHRVSLQDAAFETVY-LEIDNFF 540          
BLAST of EWM22988.1 vs. NCBI_GenBank
Match: gi|698811076|ref|XP_009838567.1| (hypothetical protein H257_12894 [Aphanomyces astaci] >gi|574106607|gb|ETV72124.1| hypothetical protein H257_12894 [Aphanomyces astaci])

HSP 1 Score: 87.0409 bits (214), Expect = 1.049e-15
Identity = 78/309 (25.24%), Postives = 142/309 (45.95%), Query Frame = 0
Query:    1 MHRFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPSFPTCFATAKRREQKRFHRAHWQGGGLILLGIGVAMAPTVHVAFW----HRQTDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSV----NKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLT 301
            ++ FP+    ++A+LD    +++ + G +TPP LTV+FMQAT+PF +L       F   F          +  +  Q  G IL+  G+ +     V         + ++G N+L ++L  +P A+S L KEQA+    QP++ YYLN  + +YQF+  L+L+P+ + +  L +     G   L   VS++       R+          +C    +    ++ C + + + +  VL   +  +LY     +  + F AL  Y      +     ++  +N   F+ +FL   G+  +   PEP T+ +T
Sbjct:   90 VNEFPKYKFFIMAVLDLCHAMLLFIPGGNTPPALTVIFMQATIPFSML-------FGYLF--------HDYQYSRMQVVGCILMSSGLLLGILPLVLLLASDVFEEAEMGWNSLCFLLAAVPGALSMLYKEQALA--PQPMDVYYLNAWVAVYQFIGGLLLAPVIFDIPTLHLDQRISGLECLVNGVSEV-------RT---------DKCHLGVVILIAFLGCKVGLFYGIGFVLNHTSVGVLYTAFTLAFPIGFFALDAYQSSGQPDDNDVTTARWMNYLSFMVVFL---GLVVFRLLPEPHTDAIT 362          
The following BLAST results are available for this feature:
BLAST of EWM22988.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103737|gb|EWM22988.1|0.000e+0100.00hypothetical protein Naga_101129g2 [Nannochloropsi... [more]
gi|553185531|ref|XP_005854262.1|4.063e-99100.00hypothetical protein NGA_0180900 [Nannochloropsis ... [more]
gi|299472495|emb|CBN77280.1|8.534e-3331.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210530939|dbj|GAX10479.1|1.098e-2330.92hypothetical protein FisN_21Lh177 [Fistulifera sol... [more]
gi|1210524476|dbj|GAX16734.1|2.785e-2331.25hypothetical protein FisN_21Hh177 [Fistulifera sol... [more]
gi|669142452|ref|XP_008606788.1|2.407e-1925.49hypothetical protein SDRG_02955 [Saprolegnia dicli... [more]
gi|673045271|ref|XP_008876596.1|8.577e-1825.24hypothetical protein H310_11639 [Aphanomyces invad... [more]
gi|1173934804|gb|OQR86037.1|2.677e-1726.03Drug/Metabolite Transporter (DMT) Superfamily [Ach... [more]
gi|1072224802|gb|OEU09551.1|2.982e-1624.78hypothetical protein FRACYDRAFT_248403 [Fragilario... [more]
gi|698811076|ref|XP_009838567.1|1.049e-1525.24hypothetical protein H257_12894 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7707rna7707Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications