EWM22989.1, cds7683 (CDS) Nannochloropsis gaditana

Overview
NameEWM22989.1
Unique Namecds7683
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:130926..130929 +
Alignment locationCM002473.1:131072..131229 +
Alignment locationCM002473.1:131422..131490 +
Alignment locationCM002473.1:131586..131694 +
Alignment locationCM002473.1:131937..132042 +
Alignment locationCM002473.1:132263..132635 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22989.1
ProductTranslation elongation factor EFG/EF2
Orig transcript idgnl|cribi|Naga_101153g2.5433.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:130926..130929 +
CM002473.1supercontigCM002473.1:131072..131229 +
CM002473.1supercontigCM002473.1:131422..131490 +
CM002473.1supercontigCM002473.1:131586..131694 +
CM002473.1supercontigCM002473.1:131937..132042 +
CM002473.1supercontigCM002473.1:132263..132635 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR009022EFG_III-V
IPR005517Transl_elong_EFG/EF2_IV
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR000640EFG_V
Homology
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|585103739|gb|EWM22989.1| (Translation elongation factor EFG/EF2 [Nannochloropsis gaditana])

HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYREASAGGGEDNFSSLSIAPRLGRVEDGVGTGGTSVGHVCWSCVGWSPTGEKEKVPECLEIEWLPVSRDARGRRVWEQSRASVGSRSEESPGTNVPLGGPVICWLHWATVAPLGRKKKNVRGEEGTVARLSMASK 272
            MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYREASAGGGEDNFSSLSIAPRLGRVEDGVGTGGTSVGHVCWSCVGWSPTGEKEKVPECLEIEWLPVSRDARGRRVWEQSRASVGSRSEESPGTNVPLGGPVICWLHWATVAPLGRKKKNVRGEEGTVARLSMASK
Sbjct:    1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYREASAGGGEDNFSSLSIAPRLGRVEDGVGTGGTSVGHVCWSCVGWSPTGEKEKVPECLEIEWLPVSRDARGRRVWEQSRASVGSRSEESPGTNVPLGGPVICWLHWATVAPLGRKKKNVRGEEGTVARLSMASK 272          
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1210524256|dbj|GAX16985.1| (hypothetical protein FisN_5Hh364 [Fistulifera solaris])

HSP 1 Score: 185.267 bits (469), Expect = 7.713e-53
Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = 0
Query:    6 QGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYRE 140
            +GVRVVL DG  HAVDSSDMAFR   A AVR+AMR     ILEP+M +EV  P+EFQG ++  LNRRM +I S+D++EDG+ + + AD PL+ MFGYST+LRS TQGKGEFTMEYK H+ V R+IQE+L+KKYRE
Sbjct:  238 EGVRVVLQDGAAHAVDSSDMAFRTCMANAVRDAMRKANPSILEPVMAVEVNVPSEFQGAVVAALNRRMGLIMSSDMNEDGSGIKVLADVPLSNMFGYSTELRSQTQGKGEFTMEYKKHVQVNRNIQEELMKKYRE 372          
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1210515757|dbj|GAX25280.1| (hypothetical protein FisN_5Lh364 [Fistulifera solaris])

HSP 1 Score: 185.267 bits (469), Expect = 8.137e-53
Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = 0
Query:    6 QGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYRE 140
            +GVRVVL DG  HAVDSSDMAFR   A AVR+AMR     ILEP+M +EV  P+EFQG ++  LNRRM +I S+D++EDG+ + + AD PL+ MFGYST+LRS TQGKGEFTMEYK H+ V R+IQE+L+KKYRE
Sbjct:  238 EGVRVVLQDGAAHAVDSSDMAFRTCMANAVRDAMRKANPSILEPVMAVEVNVPSEFQGAVVAALNRRMGLIMSSDMNEDGSGIKVLADVPLSNMFGYSTELRSQTQGKGEFTMEYKKHVQVNRNIQEELMKKYRE 372          
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1072224873|gb|OEU09622.1| (protein-synthesizing GTPase complex, EF-G component [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 181.8 bits (460), Expect = 5.265e-49
Identity = 83/140 (59.29%), Postives = 109/140 (77.86%), Query Frame = 0
Query:    1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYRE 140
            +G   +G+RVVL DG  HAVDSSDMAFR A A AVR+ M+     ILEP+MN+EV  P+EFQG ++  LNRRM +IQ++DV++DG+ + I A+ PL+ MFGYST+LRS+TQGKGEFTMEY  H  V+++ QE+L+KKYRE
Sbjct:  561 VGSEVEGIRVVLQDGAAHAVDSSDMAFRTAMANAVRDTMKKANPSILEPVMNVEVEIPSEFQGTVVAALNRRMGMIQNSDVNDDGSGIKILAEVPLSNMFGYSTELRSLTQGKGEFTMEYLKHSQVSKNAQEELMKKYRE 700          
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1025095596|ref|XP_016458175.1| (PREDICTED: elongation factor G-1, mitochondrial-like [Nicotiana tabacum])

HSP 1 Score: 168.318 bits (425), Expect = 1.829e-48
Identity = 77/139 (55.40%), Postives = 100/139 (71.94%), Query Frame = 0
Query:    1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYR 139
            +GHP + +RVVLTDG +HAVDSS++AF++A+ YA R+   A +  ILEP+M +E+  PTEFQG + G +N+R  VI  ND  ++G    I A  PL  MFGYST LRS+TQGKGEFTMEYK H PV+ D+Q QLV  Y+
Sbjct:   52 IGHPVENIRVVLTDGNSHAVDSSELAFKLASIYAFRQCYAAAKPIILEPVMLVEMKVPTEFQGTVTGDINKRKGVIIGND--QEGDDSVITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHAPVSSDVQTQLVNTYK 188          
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1009143793|ref|XP_015889449.1| (PREDICTED: elongation factor G-1, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 165.236 bits (417), Expect = 7.383e-48
Identity = 77/139 (55.40%), Postives = 99/139 (71.22%), Query Frame = 0
Query:    1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYR 139
            +GHP + +RVV+TDG +HAVDSS++AF++AA YA R+   A +  ILEP+M +E+  P EFQG + G +N+R  VI  ND  +DG    I A  PL  MFGYST LRS+TQGKGEFTMEYK HL V+ D+Q QLV  Y+
Sbjct:    7 IGHPVENIRVVITDGASHAVDSSELAFKLAAIYAFRKCYEATRPVILEPVMLVELKVPIEFQGTVAGDINKRKGVIVGND--QDGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHLRVSHDVQMQLVNNYK 143          
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|734427258|gb|KHN44106.1| (Elongation factor G, mitochondrial [Glycine soja])

HSP 1 Score: 167.548 bits (423), Expect = 7.878e-48
Identity = 77/139 (55.40%), Postives = 100/139 (71.94%), Query Frame = 0
Query:    1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYR 139
            +GHP + +RVVLTDG  HAVDSS++AF++A+ YA R+   A +  ILEP+M +E+  PTEFQG + G +N+R  VI  ND  ++G    I A  PL  MFGYST LRS+TQGKGEFTMEYK HLPV+ D+Q QL+  Y+
Sbjct:   71 IGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGND--QEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHLPVSHDVQTQLINTYK 207          
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|633912352|gb|KDD76285.1| (GTP-binding elongation factor EF-Tu/EF-1A [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 179.104 bits (453), Expect = 8.690e-48
Identity = 84/142 (59.15%), Postives = 105/142 (73.94%), Query Frame = 0
Query:    1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYREAS 142
            +GHP +GVRV LTDG  HAVDSS+MAFR+A  YA R A   G   +LEP+M +EVT+P+EFQG +MG +NRR  VIQ+++  ++G  V I+AD PL QMFGYST LRS+TQGKGEFTMEYK H PVT D+  +L   Y+  S
Sbjct:  631 IGHPVEGVRVFLTDGAAHAVDSSEMAFRLACIYAFRSAFEKGAPTVLEPVMGVEVTAPSEFQGTVMGDVNRRKGVIQNSE--QEGDDVVIEADVPLNQMFGYSTALRSMTQGKGEFTMEYKAHQPVTPDVLAELTAHYKAKS 770          
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1009143771|ref|XP_015889437.1| (PREDICTED: elongation factor G-1, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 170.244 bits (430), Expect = 8.881e-48
Identity = 78/139 (56.12%), Postives = 100/139 (71.94%), Query Frame = 0
Query:    1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYR 139
            +GHP + +RVV+TDG +HAVDSS++AF++AA YA R+   A +  ILEP+M +E+  P EFQG + G +N+R  VI  ND  +DG    I A  PL  MFGYST LRS+TQGKGEFTMEYK HLPV+ D+Q QLV  Y+
Sbjct:  160 IGHPVENIRVVITDGASHAVDSSELAFKLAAIYAFRKCYEAARPVILEPVMLVELKVPIEFQGTVAGDINKRKGVIVGND--QDGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHLPVSHDVQMQLVNNYK 296          
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|298711497|emb|CBJ26585.1| (Mef1, mitochondrial translation elongation factor EF-G [Ectocarpus siliculosus])

HSP 1 Score: 178.333 bits (451), Expect = 1.386e-47
Identity = 82/128 (64.06%), Postives = 102/128 (79.69%), Query Frame = 0
Query:    1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTR 128
            +GHP QGVRVVL DG TH VDSSDMAFR AA  AVRE++    A +LEPIM++EV +P +FQG+++G +N+R  +IQ+ D+S+DG+   I+AD PLAQMFGYSTDLRS TQGKGEFTMEY  H PV+R
Sbjct:  613 IGHPVQGVRVVLEDGQTHTVDSSDMAFRFAALMAVRESILKAGAQVLEPIMSVEVMAPNDFQGSVIGGINKRSGIIQNTDMSDDGSGCVIQADVPLAQMFGYSTDLRSSTQGKGEFTMEYNEHSPVSR 740          
The following BLAST results are available for this feature:
BLAST of EWM22989.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103739|gb|EWM22989.1|0.000e+0100.00Translation elongation factor EFG/EF2 [Nannochloro... [more]
gi|1210524256|dbj|GAX16985.1|7.713e-5363.70hypothetical protein FisN_5Hh364 [Fistulifera sola... [more]
gi|1210515757|dbj|GAX25280.1|8.137e-5363.70hypothetical protein FisN_5Lh364 [Fistulifera sola... [more]
gi|1072224873|gb|OEU09622.1|5.265e-4959.29protein-synthesizing GTPase complex, EF-G componen... [more]
gi|1025095596|ref|XP_016458175.1|1.829e-4855.40PREDICTED: elongation factor G-1, mitochondrial-li... [more]
gi|1009143793|ref|XP_015889449.1|7.383e-4855.40PREDICTED: elongation factor G-1, mitochondrial-li... [more]
gi|734427258|gb|KHN44106.1|7.878e-4855.40Elongation factor G, mitochondrial [Glycine soja][more]
gi|633912352|gb|KDD76285.1|8.690e-4859.15GTP-binding elongation factor EF-Tu/EF-1A [Helicos... [more]
gi|1009143771|ref|XP_015889437.1|8.881e-4856.12PREDICTED: elongation factor G-1, mitochondrial-li... [more]
gi|298711497|emb|CBJ26585.1|1.386e-4764.06Mef1, mitochondrial translation elongation factor ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7704rna7704Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications