EWM22989.1, cds7683 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|585103739|gb|EWM22989.1| (Translation elongation factor EFG/EF2 [Nannochloropsis gaditana]) HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0 Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query: 1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYREASAGGGEDNFSSLSIAPRLGRVEDGVGTGGTSVGHVCWSCVGWSPTGEKEKVPECLEIEWLPVSRDARGRRVWEQSRASVGSRSEESPGTNVPLGGPVICWLHWATVAPLGRKKKNVRGEEGTVARLSMASK 272
MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYREASAGGGEDNFSSLSIAPRLGRVEDGVGTGGTSVGHVCWSCVGWSPTGEKEKVPECLEIEWLPVSRDARGRRVWEQSRASVGSRSEESPGTNVPLGGPVICWLHWATVAPLGRKKKNVRGEEGTVARLSMASK
Sbjct: 1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYREASAGGGEDNFSSLSIAPRLGRVEDGVGTGGTSVGHVCWSCVGWSPTGEKEKVPECLEIEWLPVSRDARGRRVWEQSRASVGSRSEESPGTNVPLGGPVICWLHWATVAPLGRKKKNVRGEEGTVARLSMASK 272
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1210524256|dbj|GAX16985.1| (hypothetical protein FisN_5Hh364 [Fistulifera solaris]) HSP 1 Score: 185.267 bits (469), Expect = 7.713e-53 Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = 0
Query: 6 QGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYRE 140
+GVRVVL DG HAVDSSDMAFR A AVR+AMR ILEP+M +EV P+EFQG ++ LNRRM +I S+D++EDG+ + + AD PL+ MFGYST+LRS TQGKGEFTMEYK H+ V R+IQE+L+KKYRE
Sbjct: 238 EGVRVVLQDGAAHAVDSSDMAFRTCMANAVRDAMRKANPSILEPVMAVEVNVPSEFQGAVVAALNRRMGLIMSSDMNEDGSGIKVLADVPLSNMFGYSTELRSQTQGKGEFTMEYKKHVQVNRNIQEELMKKYRE 372
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1210515757|dbj|GAX25280.1| (hypothetical protein FisN_5Lh364 [Fistulifera solaris]) HSP 1 Score: 185.267 bits (469), Expect = 8.137e-53 Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = 0
Query: 6 QGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYRE 140
+GVRVVL DG HAVDSSDMAFR A AVR+AMR ILEP+M +EV P+EFQG ++ LNRRM +I S+D++EDG+ + + AD PL+ MFGYST+LRS TQGKGEFTMEYK H+ V R+IQE+L+KKYRE
Sbjct: 238 EGVRVVLQDGAAHAVDSSDMAFRTCMANAVRDAMRKANPSILEPVMAVEVNVPSEFQGAVVAALNRRMGLIMSSDMNEDGSGIKVLADVPLSNMFGYSTELRSQTQGKGEFTMEYKKHVQVNRNIQEELMKKYRE 372
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1072224873|gb|OEU09622.1| (protein-synthesizing GTPase complex, EF-G component [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 181.8 bits (460), Expect = 5.265e-49 Identity = 83/140 (59.29%), Postives = 109/140 (77.86%), Query Frame = 0
Query: 1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYRE 140
+G +G+RVVL DG HAVDSSDMAFR A A AVR+ M+ ILEP+MN+EV P+EFQG ++ LNRRM +IQ++DV++DG+ + I A+ PL+ MFGYST+LRS+TQGKGEFTMEY H V+++ QE+L+KKYRE
Sbjct: 561 VGSEVEGIRVVLQDGAAHAVDSSDMAFRTAMANAVRDTMKKANPSILEPVMNVEVEIPSEFQGTVVAALNRRMGMIQNSDVNDDGSGIKILAEVPLSNMFGYSTELRSLTQGKGEFTMEYLKHSQVSKNAQEELMKKYRE 700
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1025095596|ref|XP_016458175.1| (PREDICTED: elongation factor G-1, mitochondrial-like [Nicotiana tabacum]) HSP 1 Score: 168.318 bits (425), Expect = 1.829e-48 Identity = 77/139 (55.40%), Postives = 100/139 (71.94%), Query Frame = 0
Query: 1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYR 139
+GHP + +RVVLTDG +HAVDSS++AF++A+ YA R+ A + ILEP+M +E+ PTEFQG + G +N+R VI ND ++G I A PL MFGYST LRS+TQGKGEFTMEYK H PV+ D+Q QLV Y+
Sbjct: 52 IGHPVENIRVVLTDGNSHAVDSSELAFKLASIYAFRQCYAAAKPIILEPVMLVEMKVPTEFQGTVTGDINKRKGVIIGND--QEGDDSVITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHAPVSSDVQTQLVNTYK 188
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1009143793|ref|XP_015889449.1| (PREDICTED: elongation factor G-1, mitochondrial-like [Ziziphus jujuba]) HSP 1 Score: 165.236 bits (417), Expect = 7.383e-48 Identity = 77/139 (55.40%), Postives = 99/139 (71.22%), Query Frame = 0
Query: 1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYR 139
+GHP + +RVV+TDG +HAVDSS++AF++AA YA R+ A + ILEP+M +E+ P EFQG + G +N+R VI ND +DG I A PL MFGYST LRS+TQGKGEFTMEYK HL V+ D+Q QLV Y+
Sbjct: 7 IGHPVENIRVVITDGASHAVDSSELAFKLAAIYAFRKCYEATRPVILEPVMLVELKVPIEFQGTVAGDINKRKGVIVGND--QDGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHLRVSHDVQMQLVNNYK 143
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|734427258|gb|KHN44106.1| (Elongation factor G, mitochondrial [Glycine soja]) HSP 1 Score: 167.548 bits (423), Expect = 7.878e-48 Identity = 77/139 (55.40%), Postives = 100/139 (71.94%), Query Frame = 0
Query: 1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYR 139
+GHP + +RVVLTDG HAVDSS++AF++A+ YA R+ A + ILEP+M +E+ PTEFQG + G +N+R VI ND ++G I A PL MFGYST LRS+TQGKGEFTMEYK HLPV+ D+Q QL+ Y+
Sbjct: 71 IGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGND--QEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHLPVSHDVQTQLINTYK 207
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|633912352|gb|KDD76285.1| (GTP-binding elongation factor EF-Tu/EF-1A [Helicosporidium sp. ATCC 50920]) HSP 1 Score: 179.104 bits (453), Expect = 8.690e-48 Identity = 84/142 (59.15%), Postives = 105/142 (73.94%), Query Frame = 0
Query: 1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYREAS 142
+GHP +GVRV LTDG HAVDSS+MAFR+A YA R A G +LEP+M +EVT+P+EFQG +MG +NRR VIQ+++ ++G V I+AD PL QMFGYST LRS+TQGKGEFTMEYK H PVT D+ +L Y+ S
Sbjct: 631 IGHPVEGVRVFLTDGAAHAVDSSEMAFRLACIYAFRSAFEKGAPTVLEPVMGVEVTAPSEFQGTVMGDVNRRKGVIQNSE--QEGDDVVIEADVPLNQMFGYSTALRSMTQGKGEFTMEYKAHQPVTPDVLAELTAHYKAKS 770
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|1009143771|ref|XP_015889437.1| (PREDICTED: elongation factor G-1, mitochondrial-like [Ziziphus jujuba]) HSP 1 Score: 170.244 bits (430), Expect = 8.881e-48 Identity = 78/139 (56.12%), Postives = 100/139 (71.94%), Query Frame = 0
Query: 1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTRDIQEQLVKKYR 139
+GHP + +RVV+TDG +HAVDSS++AF++AA YA R+ A + ILEP+M +E+ P EFQG + G +N+R VI ND +DG I A PL MFGYST LRS+TQGKGEFTMEYK HLPV+ D+Q QLV Y+
Sbjct: 160 IGHPVENIRVVITDGASHAVDSSELAFKLAAIYAFRKCYEAARPVILEPVMLVELKVPIEFQGTVAGDINKRKGVIVGND--QDGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHLPVSHDVQMQLVNNYK 296
BLAST of EWM22989.1 vs. NCBI_GenBank
Match: gi|298711497|emb|CBJ26585.1| (Mef1, mitochondrial translation elongation factor EF-G [Ectocarpus siliculosus]) HSP 1 Score: 178.333 bits (451), Expect = 1.386e-47 Identity = 82/128 (64.06%), Postives = 102/128 (79.69%), Query Frame = 0
Query: 1 MGHPSQGVRVVLTDGTTHAVDSSDMAFRIAAAYAVREAMRAGQACILEPIMNLEVTSPTEFQGNIMGQLNRRMAVIQSNDVSEDGATVCIKADAPLAQMFGYSTDLRSITQGKGEFTMEYKTHLPVTR 128
+GHP QGVRVVL DG TH VDSSDMAFR AA AVRE++ A +LEPIM++EV +P +FQG+++G +N+R +IQ+ D+S+DG+ I+AD PLAQMFGYSTDLRS TQGKGEFTMEY H PV+R
Sbjct: 613 IGHPVQGVRVVLEDGQTHTVDSSDMAFRFAALMAVRESILKAGAQVLEPIMSVEVMAPNDFQGSVIGGINKRSGIIQNTDMSDDGSGCVIQADVPLAQMFGYSTDLRSSTQGKGEFTMEYNEHSPVSR 740 The following BLAST results are available for this feature:
BLAST of EWM22989.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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