EWM22998.1, cds7675 (CDS) Nannochloropsis gaditana

Overview
NameEWM22998.1
Unique Namecds7675
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:108953..108958 +
Alignment locationCM002473.1:109134..109241 +
Alignment locationCM002473.1:109671..109725 +
Alignment locationCM002473.1:109768..109940 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22998.1
Productgmp reductase 2
Orig transcript idgnl|cribi|Naga_100938g2.8981.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:108953..108958 +
CM002473.1supercontigCM002473.1:109134..109241 +
CM002473.1supercontigCM002473.1:109671..109725 +
CM002473.1supercontigCM002473.1:109768..109940 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR001093IMP_DH_GMPRt
Homology
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|585103759|gb|EWM22998.1| (gmp reductase 2 [Nannochloropsis gaditana])

HSP 1 Score: 234.572 bits (597), Expect = 3.136e-78
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 MFDILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPDQKPQPAPKPSPRTNDIWLQRNGRQRPNWKKAFFNCGGNLDSVYRKREAMIRGFSARLYRFFALTIKNFNT 113
            MFDILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPDQKPQPAPKPSPRTNDIWLQRNGRQRPNWKKAFFNCGGNLDSVYRKREAMIRGFSARLYRFFALTIKNFNT
Sbjct:    1 MFDILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPDQKPQPAPKPSPRTNDIWLQRNGRQRPNWKKAFFNCGGNLDSVYRKREAMIRGFSARLYRFFALTIKNFNT 113          
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|675885792|ref|XP_009028398.1| (hypothetical protein HELRODRAFT_180856 [Helobdella robusta] >gi|555690308|gb|ESN93540.1| hypothetical protein HELRODRAFT_180856 [Helobdella robusta])

HSP 1 Score: 85.1149 bits (209), Expect = 2.826e-17
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0
Query:    1 MFDILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPDQKPQ 47
            + DILGG+RSTCTYVGASKLKELSKRTTFIRVTQQLN VF P  KP+
Sbjct:  307 LIDILGGVRSTCTYVGASKLKELSKRTTFIRVTQQLNEVFTPFNKPE 353          
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|669151216|ref|XP_008611170.1| (GMP reductase [Saprolegnia diclina VS20] >gi|530737178|gb|EQC35420.1| GMP reductase [Saprolegnia diclina VS20])

HSP 1 Score: 84.7297 bits (208), Expect = 4.062e-17
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    3 DILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPDQKPQPAPKPSPRTN 57
            DILGG+RSTCTYVGAS+LKELSKRTTFIRVTQQLN VFG     Q     +P+TN
Sbjct:  307 DILGGVRSTCTYVGASQLKELSKRTTFIRVTQQLNEVFGKAPNEQELAANAPKTN 361          
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|565312073|gb|ETE64756.1| (GMP reductase 2, partial [Ophiophagus hannah])

HSP 1 Score: 81.6481 bits (200), Expect = 4.138e-17
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 0
Query:    3 DILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPDQKP 46
            DILGG+RSTCTYVGA+KLKELS+RTTFIRVTQQ+NP+FG + +P
Sbjct:  133 DILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFGGEDQP 176          
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|602674853|ref|XP_007442914.1| (PREDICTED: GMP reductase 2 isoform X2 [Python bivittatus])

HSP 1 Score: 82.4185 bits (202), Expect = 2.489e-16
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0
Query:    3 DILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPDQKP 46
            DILGG+RSTCTYVGA+KLKELS+RTTFIRVTQQ NP+FG   KP
Sbjct:  298 DILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQANPIFGGTDKP 341          
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|602674841|ref|XP_007442908.1| (PREDICTED: GMP reductase 2 isoform X1 [Python bivittatus] >gi|602674843|ref|XP_007442909.1| PREDICTED: GMP reductase 2 isoform X1 [Python bivittatus] >gi|602674845|ref|XP_007442910.1| PREDICTED: GMP reductase 2 isoform X1 [Python bivittatus] >gi|602674847|ref|XP_007442911.1| PREDICTED: GMP reductase 2 isoform X1 [Python bivittatus] >gi|602674849|ref|XP_007442912.1| PREDICTED: GMP reductase 2 isoform X1 [Python bivittatus] >gi|602674851|ref|XP_007442913.1| PREDICTED: GMP reductase 2 isoform X1 [Python bivittatus])

HSP 1 Score: 82.4185 bits (202), Expect = 2.635e-16
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0
Query:    3 DILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPDQKP 46
            DILGG+RSTCTYVGA+KLKELS+RTTFIRVTQQ NP+FG   KP
Sbjct:  305 DILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQANPIFGGTDKP 348          
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|1104518297|ref|XP_010619331.2| (PREDICTED: GMP reductase 2, partial [Fukomys damarensis])

HSP 1 Score: 78.1814 bits (191), Expect = 2.804e-16
Identity = 34/39 (87.18%), Postives = 39/39 (100.00%), Query Frame = 0
Query:    3 DILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFG 41
            DILGG+RSTCTYVGA+KLKELS+RTTFIRVTQQ+NP+FG
Sbjct:   86 DILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFG 124          
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|768959885|ref|XP_011618206.1| (PREDICTED: GMP reductase 2-like [Takifugu rubripes])

HSP 1 Score: 77.0258 bits (188), Expect = 4.747e-16
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0
Query:    3 DILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPD 43
            D+LGG+RSTCTYVGA KLKELS+RTTFIRVTQQLN V+G D
Sbjct:   68 DVLGGVRSTCTYVGAGKLKELSRRTTFIRVTQQLNTVYGND 108          
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|296483752|tpg|DAA25867.1| (TPA: GMP reductase 1-like [Bos taurus])

HSP 1 Score: 75.485 bits (184), Expect = 5.667e-16
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    3 DILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVFGPD 43
            DILGG+RSTCTYVGA+KLKELS+RTTFIRVTQQ+NP+F  +
Sbjct:   27 DILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFSDE 67          
BLAST of EWM22998.1 vs. NCBI_GenBank
Match: gi|403287825|ref|XP_003935126.1| (PREDICTED: GMP reductase 2-like [Saimiri boliviensis boliviensis])

HSP 1 Score: 77.0258 bits (188), Expect = 6.231e-16
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    3 DILGGLRSTCTYVGASKLKELSKRTTFIRVTQQLNPVF 40
            DILGG+RSTCTYVGA+KLKELS+RTTFIRVTQQ+NP+F
Sbjct:   79 DILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIF 116          
The following BLAST results are available for this feature:
BLAST of EWM22998.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103759|gb|EWM22998.1|3.136e-78100.00gmp reductase 2 [Nannochloropsis gaditana][more]
gi|675885792|ref|XP_009028398.1|2.826e-1782.98hypothetical protein HELRODRAFT_180856 [Helobdella... [more]
gi|669151216|ref|XP_008611170.1|4.062e-1772.73GMP reductase [Saprolegnia diclina VS20] >gi|53073... [more]
gi|565312073|gb|ETE64756.1|4.138e-1779.55GMP reductase 2, partial [Ophiophagus hannah][more]
gi|602674853|ref|XP_007442914.1|2.489e-1681.82PREDICTED: GMP reductase 2 isoform X2 [Python bivi... [more]
gi|602674841|ref|XP_007442908.1|2.635e-1681.82PREDICTED: GMP reductase 2 isoform X1 [Python bivi... [more]
gi|1104518297|ref|XP_010619331.2|2.804e-1687.18PREDICTED: GMP reductase 2, partial [Fukomys damar... [more]
gi|768959885|ref|XP_011618206.1|4.747e-1682.93PREDICTED: GMP reductase 2-like [Takifugu rubripes... [more]
gi|296483752|tpg|DAA25867.1|5.667e-1680.49TPA: GMP reductase 1-like [Bos taurus][more]
gi|403287825|ref|XP_003935126.1|6.231e-1686.84PREDICTED: GMP reductase 2-like [Saimiri boliviens... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7696rna7696Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications