EWM23000.1, cds7672 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23000.1
Unique Name	cds7672
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002473.1:102607..102615 -
Alignment location	CM002473.1:102084..102362 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23000.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101650g2.5899.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:102607..102615 -
CM002473.1	supercontig	CM002473.1:102084..102362 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM23000.1 vs. NCBI_GenBank
Match: gi|585103766|gb|EWM23000.1| (hypothetical protein Naga_101650g2 [Nannochloropsis gaditana])

HSP 1 Score: 189.889 bits (481), Expect = 3.792e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query:    1 MCAVAPRLSPPPSLPLHPEKEKGNRNARCQPARQRRAVKISIRTTAPSAMPVHVKRKAIVQLRLSTQAAERLEGLIKEGLTEDLVAVVGPDGGEC 95
            MCAVAPRLSPPPSLPLHPEKEKGNRNARCQPARQRRAVKISIRTTAPSAMPVHVKRKAIVQLRLSTQAAERLEGLIKEGLTEDLVAVVGPDGGEC
Sbjct:    1 MCAVAPRLSPPPSLPLHPEKEKGNRNARCQPARQRRAVKISIRTTAPSAMPVHVKRKAIVQLRLSTQAAERLEGLIKEGLTEDLVAVVGPDGGEC 95

The following BLAST results are available for this feature:

BLAST of EWM23000.1 vs. NCBI_GenBank

BLAST of EWM23000.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585103766\|gb\|EWM23000.1\|	3.792e-61	100.00	hypothetical protein Naga_101650g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7693	rna7693	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications