EWM23010.1, cds7663 (CDS) Nannochloropsis gaditana

Overview
NameEWM23010.1
Unique Namecds7663
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:60958..60970 -
Alignment locationCM002473.1:60385..60542 -
Alignment locationCM002473.1:60024..60256 -
Alignment locationCM002473.1:59747..59850 -
Alignment locationCM002473.1:59634..59644 -
Alignment locationCM002473.1:59264..59271 -
Alignment locationCM002473.1:58842..58911 -
Alignment locationCM002473.1:58584..58610 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23010.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101067g1.5754.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:60958..60970 -
CM002473.1supercontigCM002473.1:60385..60542 -
CM002473.1supercontigCM002473.1:60024..60256 -
CM002473.1supercontigCM002473.1:59747..59850 -
CM002473.1supercontigCM002473.1:59634..59644 -
CM002473.1supercontigCM002473.1:59264..59271 -
CM002473.1supercontigCM002473.1:58842..58911 -
CM002473.1supercontigCM002473.1:58584..58610 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23010.1 vs. NCBI_GenBank
Match: gi|585103789|gb|EWM23010.1| (hypothetical protein Naga_101067g1 [Nannochloropsis gaditana])

HSP 1 Score: 434.491 bits (1116), Expect = 2.590e-154
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 
Query:    1 MKNASYRKTAWQAKTFLSSVIFEQQGLSNHTKVPFNDRRYEQKLATEKNASHIESAANFAYDHPRCQGMTSFQGGLQFIYTCSSVPARSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEGGMSLLFDFLGAFTIIFLSQALSRYHLAWIVIDCIPPIKLSLFEHGLTGTKKPLMPQAKRNLQDGRGATASFPRETRQRGRGGRDF 207
            MKNASYRKTAWQAKTFLSSVIFEQQGLSNHTKVPFNDRRYEQKLATEKNASHIESAANFAYDHPRCQGMTSFQGGLQFIYTCSSVPARSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEGGMSLLFDFLGAFTIIFLSQALSRYHLAWIVIDCIPPIKLSLFEHGLTGTKKPLMPQAKRNLQDGRGATASFPRETRQRGRGGRDF
Sbjct:    1 MKNASYRKTAWQAKTFLSSVIFEQQGLSNHTKVPFNDRRYEQKLATEKNASHIESAANFAYDHPRCQGMTSFQGGLQFIYTCSSVPARSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEGGMSLLFDFLGAFTIIFLSQALSRYHLAWIVIDCIPPIKLSLFEHGLTGTKKPLMPQAKRNLQDGRGATASFPRETRQRGRGGRDF 207
[Close]
BLAST of EWM23010.1 vs. NCBI_GenBank
Match: gi|585112055|gb|EWM29501.1| (hypothetical protein Naga_100287g7 [Nannochloropsis gaditana])

HSP 1 Score: 90.1225 bits (222), Expect = 2.609e-20
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 
Query:   88 RSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEGGMSLLFDF 130
            RSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEGGMSLLF+F
Sbjct:   16 RSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEGGMSLLFNF 58
[Close]
BLAST of EWM23010.1 vs. NCBI_GenBank
Match: gi|585107169|gb|EWM25408.1| (hypothetical protein Naga_100005g111 [Nannochloropsis gaditana])

HSP 1 Score: 88.1965 bits (217), Expect = 4.281e-19
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 
Query:   88 RSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEGGMSLLF 128
            RSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEGGMSLLF
Sbjct:   17 RSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEGGMSLLF 57
The following BLAST results are available for this feature:
BLAST of EWM23010.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Position :
0
Zoom :
x 1
01SequenceEWM23010.1EWM29501.1EWM25408.1
Match NameE-valueIdentityDescription
gi|585103789|gb|EWM23010.1|2.590e-154100.00hypothetical protein Naga_101067g1 [Nannochloropsi... [more]
gi|585112055|gb|EWM29501.1|2.609e-2097.67hypothetical protein Naga_100287g7 [Nannochloropsi... [more]
gi|585107169|gb|EWM25408.1|4.281e-19100.00hypothetical protein Naga_100005g111 [Nannochlorop... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7683rna7683Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications