EWM23046.1, cds7626 (CDS) Nannochloropsis gaditana

Overview
NameEWM23046.1
Unique Namecds7626
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:465707..465820 -
Alignment locationCM002472.1:465477..465554 -
Alignment locationCM002472.1:465203..465284 -
Alignment locationCM002472.1:464955..465046 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23046.1
Productrna recognition motif-containing protein
Orig transcript idgnl|cribi|Naga_100570g3.9715.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:465707..465820 -
CM002472.1supercontigCM002472.1:465477..465554 -
CM002472.1supercontigCM002472.1:465203..465284 -
CM002472.1supercontigCM002472.1:464955..465046 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|585103855|gb|EWM23046.1| (rna recognition motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 245.358 bits (625), Expect = 3.317e-82
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query:    1 MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKDGGGRGAEDENVRLFVGGLPDNCVEEDLME 121
            MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKDGGGRGAEDENVRLFVGGLPDNCVEEDLME
Sbjct:    1 MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKDGGGRGAEDENVRLFVGGLPDNCVEEDLME 121          
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|1127361270|gb|APR82673.1| (RNA-binding protein [Minicystis rosea])

HSP 1 Score: 74.3294 bits (181), Expect = 2.145e-14
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    4 IGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQ 86
            +  KLF+G+LS ET    L  +F+    G+IV A+V  DR TG S+ +GF+   D  D   AI  LH++ELDGS+I V+ +T+
Sbjct:   71 VPMKLFVGSLSNETTSADLHAHFES--FGQIVEAKVITDRATGASRNFGFVNMADRKDALAAIAALHQSELDGSRIVVNVATE 151          
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|931431113|gb|KPK16809.1| (hypothetical protein AMJ62_04005 [Myxococcales bacterium SG8_38])

HSP 1 Score: 71.2478 bits (173), Expect = 8.583e-14
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 0
Query:    7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRS 84
            KLF+G LS  T    LE+ F  A  GE+V A+V  DR++G S+ +GF+TF+D+    RAIEEL  + LDG  I VDR+
Sbjct:    4 KLFVGGLSWNTTSAALEEAF--AACGEVVEAKVVTDRDSGRSRGFGFVTFQDDQGAARAIEELDGSALDGRTIRVDRA 79          
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|1084135626|gb|OGL32602.1| (RNA-binding protein [Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_42_8])

HSP 1 Score: 70.0922 bits (170), Expect = 1.961e-13
Identity = 34/79 (43.04%), Postives = 57/79 (72.15%), Query Frame = 0
Query:    4 IGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVD 82
            +  KLF+G+L+  T+D GL+ +F+ A  G IV A+V  DR +G S+ +GF+ F+++ D K+AI+ L+ ++LDG +ITV+
Sbjct:    1 MATKLFVGSLAWATNDDGLKAHFESA--GPIVSARVVTDRESGRSRGFGFVEFENDDDAKKAIDTLNSSQLDGREITVN 77          
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|1083793348|gb|OGI72063.1| (RNA-binding protein [Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_02_FULL_38_15])

HSP 1 Score: 69.3218 bits (168), Expect = 3.625e-13
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 0
Query:    7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRS 84
            KLFIG+L+  T+D  L  +F  A  GE+V A+V  ++ TG S+ +GF+ +K EAD   AIE+L+ +ELDG  ITV  S
Sbjct:    4 KLFIGSLAWATNDQSLMSHF--AAIGEVVSARVVTEKMTGRSRGFGFVEYKSEADAATAIEKLNGSELDGRNITVQES 79          
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|585108650|gb|EWM26565.1| (cold-inducible rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 71.2478 bits (173), Expect = 4.892e-13
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 0
Query:    7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVD 82
            KL+IGNLS +T + GL + F +   GE+ +A+V  DR+TG S+ +GF+TF ++ D + AI+ L+ETELDG  I V+
Sbjct:   47 KLYIGNLSFKTTEDGLREAFSEH--GEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVN 120          
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|406965367|gb|EKD91001.1| (Glycine-rich RNA-binding protein [uncultured bacterium] >gi|818326276|gb|KKQ09202.1| RRM domain RNA-binding protein [Candidatus Daviesbacteria bacterium GW2011_GWB1_36_5] >gi|818332315|gb|KKQ14800.1| RRM domain RNA-binding protein [Candidatus Daviesbacteria bacterium GW2011_GWA1_36_8])

HSP 1 Score: 68.5514 bits (166), Expect = 7.665e-13
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 0
Query:    1 MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRS 84
            M  I  KLF+G+L     D+GL + F     GEI+ A V KDR TG S+ +GF+ F ++ADG +AI+E++  ++DG  I V+ +
Sbjct:    1 MITISKKLFVGSLPWGVDDSGLREAFSKY--GEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQEMNGADMDGRNIVVNEA 82          
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|1083076314|gb|OGD75045.1| (RNA-binding protein [Candidatus Coatesbacteria bacterium RBG_13_66_14])

HSP 1 Score: 67.781 bits (164), Expect = 1.800e-12
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query:    7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQ 86
            KLF+G+LS +T D  L   FK    GE+V A+V  +R++G S+ +GF+TF D+  G+ AI E++ TELDG  I VD +++
Sbjct:    2 KLFVGSLSWDTTDQTLRDAFKRF--GEVVEAKVITERDSGRSRGFGFVTFADDEAGRNAISEMNGTELDGRTIRVDEASE 79          
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|672823968|gb|KFH68861.1| (hypothetical protein MVEG_05665 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 68.5514 bits (166), Expect = 2.065e-12
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 0
Query:    7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKDGGGRG 97
            KLFIG LS  T D  L   F     GE+  A V +DR TG S+ +GF+TF D+A  + AI+ LHE E +G  I VDR+++      GG RG
Sbjct:    4 KLFIGGLSWNTSDESLRHGFSHF--GEVQDAIVIRDRETGRSRGFGFVTFADDASAQNAIDHLHEKEFEGRTIKVDRASE---RAAGGSRG 89          
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|971515942|dbj|GAQ82239.1| (RNA-binding protein [Klebsormidium nitens])

HSP 1 Score: 68.1662 bits (165), Expect = 4.507e-12
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0
Query:    6 FKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRS 84
            F++F+G LS  T D GLE  F     G+I  A+V  +R TG S+ +GF+TFKD+   + AI+ELH  ELDG  ITV+++
Sbjct:    9 FRVFVGGLSWNTDDRGLEDAFSKF--GDIADAKVVNERETGRSRGFGFVTFKDDRSMQDAIDELHGKELDGRNITVNKA 85          
The following BLAST results are available for this feature:
BLAST of EWM23046.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103855|gb|EWM23046.1|3.317e-82100.00rna recognition motif-containing protein [Nannochl... [more]
gi|1127361270|gb|APR82673.1|2.145e-1443.37RNA-binding protein [Minicystis rosea][more]
gi|931431113|gb|KPK16809.1|8.583e-1448.72hypothetical protein AMJ62_04005 [Myxococcales bac... [more]
gi|1084135626|gb|OGL32602.1|1.961e-1343.04RNA-binding protein [Candidatus Saccharibacteria b... [more]
gi|1083793348|gb|OGI72063.1|3.625e-1347.44RNA-binding protein [Candidatus Nomurabacteria bac... [more]
gi|585108650|gb|EWM26565.1|4.892e-1347.37cold-inducible rna-binding protein [Nannochloropsi... [more]
gi|406965367|gb|EKD91001.1|7.665e-1341.67Glycine-rich RNA-binding protein [uncultured bacte... [more]
gi|1083076314|gb|OGD75045.1|1.800e-1245.00RNA-binding protein [Candidatus Coatesbacteria bac... [more]
gi|672823968|gb|KFH68861.1|2.065e-1245.05hypothetical protein MVEG_05665 [Mortierella verti... [more]
gi|971515942|dbj|GAQ82239.1|4.507e-1246.84RNA-binding protein [Klebsormidium nitens][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7646rna7646Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications