EWM23046.1, cds7626 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|585103855|gb|EWM23046.1| (rna recognition motif-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 245.358 bits (625), Expect = 3.317e-82 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query: 1 MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKDGGGRGAEDENVRLFVGGLPDNCVEEDLME 121
MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKDGGGRGAEDENVRLFVGGLPDNCVEEDLME
Sbjct: 1 MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKDGGGRGAEDENVRLFVGGLPDNCVEEDLME 121
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|1127361270|gb|APR82673.1| (RNA-binding protein [Minicystis rosea]) HSP 1 Score: 74.3294 bits (181), Expect = 2.145e-14 Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 0
Query: 4 IGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQ 86
+ KLF+G+LS ET L +F+ G+IV A+V DR TG S+ +GF+ D D AI LH++ELDGS+I V+ +T+
Sbjct: 71 VPMKLFVGSLSNETTSADLHAHFES--FGQIVEAKVITDRATGASRNFGFVNMADRKDALAAIAALHQSELDGSRIVVNVATE 151
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|931431113|gb|KPK16809.1| (hypothetical protein AMJ62_04005 [Myxococcales bacterium SG8_38]) HSP 1 Score: 71.2478 bits (173), Expect = 8.583e-14 Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 0
Query: 7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRS 84
KLF+G LS T LE+ F A GE+V A+V DR++G S+ +GF+TF+D+ RAIEEL + LDG I VDR+
Sbjct: 4 KLFVGGLSWNTTSAALEEAF--AACGEVVEAKVVTDRDSGRSRGFGFVTFQDDQGAARAIEELDGSALDGRTIRVDRA 79
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|1084135626|gb|OGL32602.1| (RNA-binding protein [Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_42_8]) HSP 1 Score: 70.0922 bits (170), Expect = 1.961e-13 Identity = 34/79 (43.04%), Postives = 57/79 (72.15%), Query Frame = 0
Query: 4 IGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVD 82
+ KLF+G+L+ T+D GL+ +F+ A G IV A+V DR +G S+ +GF+ F+++ D K+AI+ L+ ++LDG +ITV+
Sbjct: 1 MATKLFVGSLAWATNDDGLKAHFESA--GPIVSARVVTDRESGRSRGFGFVEFENDDDAKKAIDTLNSSQLDGREITVN 77
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|1083793348|gb|OGI72063.1| (RNA-binding protein [Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_02_FULL_38_15]) HSP 1 Score: 69.3218 bits (168), Expect = 3.625e-13 Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 0
Query: 7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRS 84
KLFIG+L+ T+D L +F A GE+V A+V ++ TG S+ +GF+ +K EAD AIE+L+ +ELDG ITV S
Sbjct: 4 KLFIGSLAWATNDQSLMSHF--AAIGEVVSARVVTEKMTGRSRGFGFVEYKSEADAATAIEKLNGSELDGRNITVQES 79
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|585108650|gb|EWM26565.1| (cold-inducible rna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 71.2478 bits (173), Expect = 4.892e-13 Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 0
Query: 7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVD 82
KL+IGNLS +T + GL + F + GE+ +A+V DR+TG S+ +GF+TF ++ D + AI+ L+ETELDG I V+
Sbjct: 47 KLYIGNLSFKTTEDGLREAFSEH--GEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVN 120
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|406965367|gb|EKD91001.1| (Glycine-rich RNA-binding protein [uncultured bacterium] >gi|818326276|gb|KKQ09202.1| RRM domain RNA-binding protein [Candidatus Daviesbacteria bacterium GW2011_GWB1_36_5] >gi|818332315|gb|KKQ14800.1| RRM domain RNA-binding protein [Candidatus Daviesbacteria bacterium GW2011_GWA1_36_8]) HSP 1 Score: 68.5514 bits (166), Expect = 7.665e-13 Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 0
Query: 1 MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRS 84
M I KLF+G+L D+GL + F GEI+ A V KDR TG S+ +GF+ F ++ADG +AI+E++ ++DG I V+ +
Sbjct: 1 MITISKKLFVGSLPWGVDDSGLREAFSKY--GEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQEMNGADMDGRNIVVNEA 82
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|1083076314|gb|OGD75045.1| (RNA-binding protein [Candidatus Coatesbacteria bacterium RBG_13_66_14]) HSP 1 Score: 67.781 bits (164), Expect = 1.800e-12 Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQ 86
KLF+G+LS +T D L FK GE+V A+V +R++G S+ +GF+TF D+ G+ AI E++ TELDG I VD +++
Sbjct: 2 KLFVGSLSWDTTDQTLRDAFKRF--GEVVEAKVITERDSGRSRGFGFVTFADDEAGRNAISEMNGTELDGRTIRVDEASE 79
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|672823968|gb|KFH68861.1| (hypothetical protein MVEG_05665 [Mortierella verticillata NRRL 6337]) HSP 1 Score: 68.5514 bits (166), Expect = 2.065e-12 Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 0
Query: 7 KLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKDGGGRG 97
KLFIG LS T D L F GE+ A V +DR TG S+ +GF+TF D+A + AI+ LHE E +G I VDR+++ GG RG
Sbjct: 4 KLFIGGLSWNTSDESLRHGFSHF--GEVQDAIVIRDRETGRSRGFGFVTFADDASAQNAIDHLHEKEFEGRTIKVDRASE---RAAGGSRG 89
BLAST of EWM23046.1 vs. NCBI_GenBank
Match: gi|971515942|dbj|GAQ82239.1| (RNA-binding protein [Klebsormidium nitens]) HSP 1 Score: 68.1662 bits (165), Expect = 4.507e-12 Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0
Query: 6 FKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRS 84
F++F+G LS T D GLE F G+I A+V +R TG S+ +GF+TFKD+ + AI+ELH ELDG ITV+++
Sbjct: 9 FRVFVGGLSWNTDDRGLEDAFSKF--GDIADAKVVNERETGRSRGFGFVTFKDDRSMQDAIDELHGKELDGRNITVNKA 85 The following BLAST results are available for this feature:
BLAST of EWM23046.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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