EWM23050.1, cds7624 (CDS) Nannochloropsis gaditana

Overview
NameEWM23050.1
Unique Namecds7624
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:463993..464078 -
Alignment locationCM002472.1:463629..463742 -
Alignment locationCM002472.1:463348..463448 -
Alignment locationCM002472.1:463097..463187 -
Alignment locationCM002472.1:462690..462921 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23050.1
ProductNucleotide-binding, alpha-beta plait
Orig transcript idgnl|cribi|Naga_100245g2.7079.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:463993..464078 -
CM002472.1supercontigCM002472.1:463629..463742 -
CM002472.1supercontigCM002472.1:463348..463448 -
CM002472.1supercontigCM002472.1:463097..463187 -
CM002472.1supercontigCM002472.1:462690..462921 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
Homology
[Close]
BLAST of EWM23050.1 vs. NCBI_GenBank
Match: gi|585103860|gb|EWM23050.1| (Nucleotide-binding, alpha-beta plait [Nannochloropsis gaditana])

HSP 1 Score: 407.912 bits (1047), Expect = 9.416e-144
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 
Query:    1 MEGGKEVRLFVGGLPEGCTDKDLMHKFRRSDPVEAFLPPRQSVAPLYGFVVVRDEGRNLKEAFALEGDYFDDRSPHRMAVTFSKPRGGGGGGGGGGGDRYAGSSGGYSRGRSPSPVYSRRRGRSPSPSDREALSSRSVAFPLSLPLSVSGPTTLAVLRRKEAGREVCMGPRCWKGVKKEKEVRAKLAGRGQEGDRFAFSALQGPCKA 207
            MEGGKEVRLFVGGLPEGCTDKDLMHKFRRSDPVEAFLPPRQSVAPLYGFVVVRDEGRNLKEAFALEGDYFDDRSPHRMAVTFSKPRGGGGGGGGGGGDRYAGSSGGYSRGRSPSPVYSRRRGRSPSPSDREALSSRSVAFPLSLPLSVSGPTTLAVLRRKEAGREVCMGPRCWKGVKKEKEVRAKLAGRGQEGDRFAFSALQGPCKA
Sbjct:    1 MEGGKEVRLFVGGLPEGCTDKDLMHKFRRSDPVEAFLPPRQSVAPLYGFVVVRDEGRNLKEAFALEGDYFDDRSPHRMAVTFSKPRGGGGGGGGGGGDRYAGSSGGYSRGRSPSPVYSRRRGRSPSPSDREALSSRSVAFPLSLPLSVSGPTTLAVLRRKEAGREVCMGPRCWKGVKKEKEVRAKLAGRGQEGDRFAFSALQGPCKA 207
The following BLAST results are available for this feature:
BLAST of EWM23050.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103860|gb|EWM23050.1|9.416e-144100.00Nucleotide-binding, alpha-beta plait [Nannochlorop... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7644rna7644Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications