EWM23067.1, cds7606 (CDS) Nannochloropsis gaditana

Overview
NameEWM23067.1
Unique Namecds7606
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:416336..416737 -
Alignment locationCM002472.1:416107..416213 -
Alignment locationCM002472.1:415680..415857 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23067.1
Productzinc finger protein
Orig transcript idgnl|cribi|Naga_101466g2.1541.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:416336..416737 -
CM002472.1supercontigCM002472.1:416107..416213 -
CM002472.1supercontigCM002472.1:415680..415857 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR024158Mt_import_TIM15
IPR007853Znf_DNL-typ
Homology
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|585103891|gb|EWM23067.1| (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 469.544 bits (1207), Expect = 1.717e-167
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query:    1 MLFSTSIHRIPLRLSANMQKAHITSQGRRATGAFQSLSLVRRAVITRPHRIHSHHLLAIVHSTKKRNRNGSPFSIHLGHASFCSQKTSDDNRGPGARAETTSTSPSPPSTSATPTDVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEKVGEGPRAGGREGGREQGREGGTNVKEGRNTDSGQNKRVAQ 228
            MLFSTSIHRIPLRLSANMQKAHITSQGRRATGAFQSLSLVRRAVITRPHRIHSHHLLAIVHSTKKRNRNGSPFSIHLGHASFCSQKTSDDNRGPGARAETTSTSPSPPSTSATPTDVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEKVGEGPRAGGREGGREQGREGGTNVKEGRNTDSGQNKRVAQ
Sbjct:    1 MLFSTSIHRIPLRLSANMQKAHITSQGRRATGAFQSLSLVRRAVITRPHRIHSHHLLAIVHSTKKRNRNGSPFSIHLGHASFCSQKTSDDNRGPGARAETTSTSPSPPSTSATPTDVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEKVGEGPRAGGREGGREQGREGGTNVKEGRNTDSGQNKRVAQ 228          
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|695403976|ref|XP_009523416.1| (hypothetical protein PHYSODRAFT_259700 [Phytophthora sojae] >gi|348680883|gb|EGZ20699.1| hypothetical protein PHYSODRAFT_259700 [Phytophthora sojae])

HSP 1 Score: 112.464 bits (280), Expect = 2.652e-27
Identity = 66/170 (38.82%), Postives = 91/170 (53.53%), Query Frame = 0
Query:   29 RATGAFQSLSLVRRAVITRPHRIHSHHLLAIVHSTKKRNRNGSPFSIHLGHASFCSQKTSDDNR----GPGARAETTSTSPSPPSTSATPTDVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEKVGEGPR 194
            R   A Q      R + ++P R+ S    A+V +T   +    P         F +Q + DDN      P A AE+++ +      +A  +  PGV     +  +VYTC VC+TRS K  S+ AY  GVVLVRCPGC+NLHL+ DRLGWFED  TD++ +L +K GE  R
Sbjct:    8 RCALALQPSHAASRLLPSQPLRLLSSTPSALVRAT---SAAFPPCRCSSHKRCFATQTSDDDNDSNSPAPAASAESSTEA------AADYSGAPGVESPGDKFVMVYTCSVCETRSAKTISKHAYYKGVVLVRCPGCENLHLVADRLGWFEDDSTDVESLLQQK-GEKVR 167          
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|1214692535|gb|OWZ07118.1| (hypothetical protein PHMEG_00020536 [Phytophthora megakarya])

HSP 1 Score: 111.694 bits (278), Expect = 3.311e-27
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 0
Query:   83 CSQKTSDDNRGPGARAETTSTSPSPPSTSATP-TDVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEK 188
            C    SDDN  P      +  +PS  + SA+  +  PGV    ++  +VYTC VC+TRS K  S+ AY  GVVLVRCPGC+NLHL+ DRLGWFED GTD++ +L +K
Sbjct:   54 CFANQSDDNDTP-----PSPVAPSDSTDSASEHSGAPGVESPGEKFVMVYTCNVCETRSAKTISKHAYYKGVVLVRCPGCENLHLVADRLGWFEDDGTDVESLLQQK 155          
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|953502021|emb|CEG36952.1| (zinc finger [Plasmopara halstedii])

HSP 1 Score: 109.768 bits (273), Expect = 1.368e-26
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 0
Query:  106 SPPSTSATPTDVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEK 188
            SP + + T + VPGV     +  +VYTC VC+TRS K  S+ AY  GVVLVRCPGC+NLHLI DRLGWFED  TD++ +L +K
Sbjct:   60 SPVTEATTISSVPGVESPGDKFVMVYTCSVCETRSAKTISKHAYYKGVVLVRCPGCENLHLIADRLGWFEDDATDVESLLKQK 142          
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|675163143|ref|XP_008890456.1| (hypothetical protein PPTG_00743 [Phytophthora parasitica INRA-310] >gi|566033790|gb|ETI56701.1| hypothetical protein F443_00878 [Phytophthora parasitica P1569] >gi|567971448|gb|ETK96456.1| hypothetical protein L915_00819 [Phytophthora parasitica] >gi|567999778|gb|ETL49812.1| hypothetical protein L916_00809 [Phytophthora parasitica] >gi|568028943|gb|ETM02877.1| hypothetical protein L917_00777 [Phytophthora parasitica] >gi|568059602|gb|ETM56177.1| hypothetical protein L914_00807 [Phytophthora parasitica] >gi|568109784|gb|ETN24391.1| hypothetical protein PPTG_00743 [Phytophthora parasitica INRA-310] >gi|570337418|gb|ETO85366.1| hypothetical protein F444_00886 [Phytophthora parasitica P1976] >gi|570961483|gb|ETP26462.1| hypothetical protein F441_00854 [Phytophthora parasitica CJ01A1] >gi|570998204|gb|ETP54459.1| hypothetical protein F442_00832 [Phytophthora parasitica P10297] >gi|970630589|gb|KUF77475.1| DNL-type zinc finger protein [Phytophthora nicotianae] >gi|970650311|gb|KUF89378.1| DNL-type zinc finger protein [Phytophthora nicotianae] >gi|970661422|gb|KUF98894.1| Flagellar WD repeat-containing protein Pf20 [Phytophthora nicotianae])

HSP 1 Score: 107.457 bits (267), Expect = 1.519e-25
Identity = 58/129 (44.96%), Postives = 76/129 (58.91%), Query Frame = 0
Query:   75 IHLGHASF--------CSQKTSDDNRGPGARAETTSTSPSPPSTSATP-TDVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEKVGEGPR 194
            +H+  ASF        C    S D   P      + T+ S  + SAT  +  PGV    ++  +VYTC VC+TRS K  S+ AY +GVVLVRCPGC+NLHL+ DRLGWFED  TD++ +L +K GE  R
Sbjct:   42 LHVSRASFPHLHSHSRCFATQSGDIEPP-----VSPTTSSESTVSATEYSGAPGVESPGEKFVMVYTCSVCETRSAKTISKHAYYNGVVLVRCPGCENLHLVADRLGWFEDDSTDVESLLKQK-GESVR 164          
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|1173947650|gb|OQR95876.1| (hypothetical protein THRCLA_22059 [Thraustotheca clavata])

HSP 1 Score: 106.301 bits (264), Expect = 2.577e-25
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 0
Query:  103 TSPSPPSTSATPTDV---PGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEKVGEG 192
            +S +PP +   P+ +   PGV    ++  ++YTC VC TR+ K  S++AY HGVVLVRCP C+NLHLI DRLGWFED   D+++IL  K G+ 
Sbjct:   35 SSLTPPPSDGAPSGILNAPGVESKGEKFVMLYTCTVCDTRAAKTISKQAYYHGVVLVRCPKCENLHLIADRLGWFEDDSYDVEQILKAKGGQA 127          
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|1102625940|emb|CRH03939.1| (zinc finger protein, putative [Plasmodium relictum])

HSP 1 Score: 106.301 bits (264), Expect = 2.009e-24
Identity = 42/66 (63.64%), Postives = 56/66 (84.85%), Query Frame = 0
Query:  127 LAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEKVGEG 192
            L +++TCK+C+ RS K FS++AY +GVV++RCP CDNLHLI D+LGWF+DG T+I+KIL EK GEG
Sbjct:  167 LVLMFTCKICEKRSAKKFSKQAYYNGVVIIRCPSCDNLHLISDQLGWFQDGKTNIEKILEEK-GEG 231          
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|855301756|ref|XP_012894217.1| (Zim17 [Blastocystis hominis] >gi|300120615|emb|CBK20169.2| Zim17 [Blastocystis hominis])

HSP 1 Score: 102.449 bits (254), Expect = 3.817e-24
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 0
Query:   92 RGPGARAETTSTSPSPPSTSATPTDVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEK 188
            + P ++ E   +    PS       +PG       + IV+TCKVC TRS +  S+EAY+HGVVL+RCPGC+NLHLI D LG+F+D  T++++ILA+K
Sbjct:   25 KNPDSKEEDARSREVLPS-------IPGSKTTDDVMIIVFTCKVCNTRSARKMSKEAYNHGVVLIRCPGCNNLHLIADHLGYFDDNSTNVEQILAQK 114          
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|1032148710|gb|OAO12894.1| (Zim17-like protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 103.605 bits (257), Expect = 4.900e-24
Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   97 RAETTSTSPSPPSTSATPTD---------VPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEK 188
            R E+T+T P     S  P D         +PG       + IV+TC+VC TR+ +  S+EAY+HGVVL+RCPGC+NLHLI D LG+F+D  T+I++ILA+K
Sbjct:   59 RYESTTTLPET-EKSDKPRDARENEVLPSIPGAKTTNDVMIIVFTCRVCNTRAARKISKEAYNHGVVLIRCPGCNNLHLIADHLGYFDDNSTNIEQILAQK 158          
BLAST of EWM23067.1 vs. NCBI_GenBank
Match: gi|1103664679|emb|CRG95717.1| (zinc finger protein, putative [Plasmodium gallinaceum])

HSP 1 Score: 103.605 bits (257), Expect = 2.627e-23
Identity = 38/62 (61.29%), Postives = 53/62 (85.48%), Query Frame = 0
Query:  127 LAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEK 188
            L +++TCK+C+ +S K FS++AY +GVV++RCP CDNLHLI D+LGWF+DG T+I+KIL EK
Sbjct:  163 LVLMFTCKICEKKSAKKFSKQAYYNGVVIIRCPSCDNLHLISDQLGWFQDGKTNIEKILEEK 224          
The following BLAST results are available for this feature:
BLAST of EWM23067.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103891|gb|EWM23067.1|1.717e-167100.00zinc finger protein [Nannochloropsis gaditana][more]
gi|695403976|ref|XP_009523416.1|2.652e-2738.82hypothetical protein PHYSODRAFT_259700 [Phytophtho... [more]
gi|1214692535|gb|OWZ07118.1|3.311e-2749.53hypothetical protein PHMEG_00020536 [Phytophthora ... [more]
gi|953502021|emb|CEG36952.1|1.368e-2656.63zinc finger [Plasmopara halstedii][more]
gi|675163143|ref|XP_008890456.1|1.519e-2544.96hypothetical protein PPTG_00743 [Phytophthora para... [more]
gi|1173947650|gb|OQR95876.1|2.577e-2549.46hypothetical protein THRCLA_22059 [Thraustotheca c... [more]
gi|1102625940|emb|CRH03939.1|2.009e-2463.64zinc finger protein, putative [Plasmodium relictum... [more]
gi|855301756|ref|XP_012894217.1|3.817e-2446.39Zim17 [Blastocystis hominis] >gi|300120615|emb|CBK... [more]
gi|1032148710|gb|OAO12894.1|4.900e-2447.52Zim17-like protein [Blastocystis sp. ATCC 50177/Na... [more]
gi|1103664679|emb|CRG95717.1|2.627e-2361.29zinc finger protein, putative [Plasmodium gallinac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7626rna7626Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications