EWM23068.1, cds7605 (CDS) Nannochloropsis gaditana

Overview
NameEWM23068.1
Unique Namecds7605
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:413230..413756 -
Alignment locationCM002472.1:412799..413051 -

Link to JBrowse

Properties
Property NameValue
Start range412799
Start range.
Protein idEWM23068.1
Productautophagy protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101558g1.3760.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:413230..413756 -
CM002472.1supercontigCM002472.1:412799..413051 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005773vacuole
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR004241Atg8-like
Homology
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|585103894|gb|EWM23068.1| (autophagy protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MSAHRCCVPPLCRLVLFVGATADLATFSGVGELLRTGLTLGTKQQHTATIEAATKLCVGFVVVVLREKPSTLHLRTIPAPSKMSSFKAEHPLGKKGEEAFVGGYDEGGIPTTCHPSHVLSFFAFRFPLLATPFCCFLAADKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTCTDPFPPTLPPFLPSFLPPSFLPLQVYGRCSRARIGRSPSERFTA 260
            MSAHRCCVPPLCRLVLFVGATADLATFSGVGELLRTGLTLGTKQQHTATIEAATKLCVGFVVVVLREKPSTLHLRTIPAPSKMSSFKAEHPLGKKGEEAFVGGYDEGGIPTTCHPSHVLSFFAFRFPLLATPFCCFLAADKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTCTDPFPPTLPPFLPSFLPPSFLPLQVYGRCSRARIGRSPSERFTA
Sbjct:    1 MSAHRCCVPPLCRLVLFVGATADLATFSGVGELLRTGLTLGTKQQHTATIEAATKLCVGFVVVVLREKPSTLHLRTIPAPSKMSSFKAEHPLGKKGEEAFVGGYDEGGIPTTCHPSHVLSFFAFRFPLLATPFCCFLAADKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTCTDPFPPTLPPFLPSFLPPSFLPLQVYGRCSRARIGRSPSERFTA 260          
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|397567046|gb|EJK45363.1| (hypothetical protein THAOC_36026 [Thalassiosira oceanica])

HSP 1 Score: 147.132 bits (370), Expect = 5.433e-40
Identity = 77/130 (59.23%), Postives = 88/130 (67.69%), Query Frame = 0
Query:   86 FKAEHPLGKKGEEAFVGGYDEGGIPTTCHPSHVLSFFAFRFPLLATPFCCFLAADKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPT 215
            FK EHPLG  G     GG+D   + T CH          +  L   P C     +KRK EAE+I  KYPDR+PVICEKADRS+IPDIDKKKYLVPADLTVGQF YVIRKRI+L PEKA+F+F +N IPP 
Sbjct:   64 FKEEHPLGNAG-----GGFD--NLSTLCHHRRR----TLQLTLSDVPNCT-CTTEKRKSEAERIRGKYPDRVPVICEKADRSDIPDIDKKKYLVPADLTVGQFHYVIRKRIQLAPEKALFLFCSNNIPPN 181          
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|673037584|ref|XP_008872753.1| (hypothetical protein H310_08680 [Aphanomyces invadans] >gi|574471549|gb|ETV98556.1| hypothetical protein H310_08680 [Aphanomyces invadans])

HSP 1 Score: 138.272 bits (347), Expect = 9.117e-38
Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 0
Query:  140 DKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTCT 217
            +KR+ EA++I SKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQF YVIRKRI+L PEKAIFIF+NN +PPT +
Sbjct:   11 EKRQAEAQRIRSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTAS 88          
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|698798870|ref|XP_009832464.1| (hypothetical protein H257_08331 [Aphanomyces astaci] >gi|574112635|gb|ETV78127.1| hypothetical protein H257_08331 [Aphanomyces astaci])

HSP 1 Score: 137.887 bits (346), Expect = 1.195e-37
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0
Query:  140 DKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTC 216
            +KR+ EA++I SKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQF YVIRKRI+L PEKAIFIF+NN +PPT 
Sbjct:   11 EKRQAEAQRIRSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTA 87          
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|1173955555|gb|OQS02504.1| (autophagy-related protein [Thraustotheca clavata])

HSP 1 Score: 136.346 bits (342), Expect = 3.376e-37
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 0
Query:  140 DKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTC 216
            +KR+ EA++I SKYPDRIPVICEKADRS+IPDIDKKKYLVPADLTVGQF YVIRKRI+L PEKAIFIF+NN +PPT 
Sbjct:   11 EKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTA 87          
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|301117470|ref|XP_002906463.1| (autophagy-related protein, putative [Phytophthora infestans T30-4] >gi|675201517|ref|XP_008909643.1| hypothetical protein PPTG_14822 [Phytophthora parasitica INRA-310] >gi|675201519|ref|XP_008909644.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|695375289|ref|XP_009515510.1| hypothetical protein PHYSODRAFT_353495 [Phytophthora sojae] >gi|62899789|sp|Q8H715.1|ATG8_PHYIN RecName: Full=Autophagy-related protein 8; AltName: Full=Autophagy-related ubiquitin-like modifier ATG8; Flags: Precursor >gi|23394382|gb|AAN31480.1| microtubial binding protein [Phytophthora infestans] >gi|262107812|gb|EEY65864.1| autophagy-related protein, putative [Phytophthora infestans T30-4] >gi|348688421|gb|EGZ28235.1| hypothetical protein PHYSODRAFT_353495 [Phytophthora sojae] >gi|566017603|gb|ETI40514.1| hypothetical protein F443_14127 [Phytophthora parasitica P1569] >gi|566017604|gb|ETI40515.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567954982|gb|ETK80615.1| hypothetical protein L915_13769 [Phytophthora parasitica] >gi|567954983|gb|ETK80616.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567983651|gb|ETL34038.1| hypothetical protein L916_13666 [Phytophthora parasitica] >gi|567983652|gb|ETL34039.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568013137|gb|ETL87314.1| hypothetical protein L917_13474 [Phytophthora parasitica] >gi|568013138|gb|ETL87315.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568043245|gb|ETM40540.1| hypothetical protein L914_13559 [Phytophthora parasitica] >gi|568043246|gb|ETM40541.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568090338|gb|ETN05173.1| hypothetical protein PPTG_14822 [Phytophthora parasitica INRA-310] >gi|568090339|gb|ETN05174.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570321299|gb|ETO69247.1| hypothetical protein F444_14157 [Phytophthora parasitica P1976] >gi|570321300|gb|ETO69248.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570945033|gb|ETP10290.1| hypothetical protein F441_14055 [Phytophthora parasitica CJ01A1] >gi|570945034|gb|ETP10291.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570976664|gb|ETP38432.1| hypothetical protein F442_13973 [Phytophthora parasitica P10297] >gi|570976665|gb|ETP38433.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970642449|gb|KUF84121.1| Autophagy-related protein 8 [Phytophthora nicotianae] >gi|1214713801|gb|OWZ24681.1| Autophagy-related protein [Phytophthora megakarya])

HSP 1 Score: 136.346 bits (342), Expect = 3.656e-37
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 0
Query:  140 DKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTC 216
            +KR+ EA++I SKYPDRIPVICEKADRS+IPDIDKKKYLVPADLTVGQF YVIRKRI+L PEKAIFIF+NN +PPT 
Sbjct:   11 EKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTA 87          
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|953502622|emb|CEG36286.1| (autophagy-related protein 8 precursor [Plasmopara halstedii])

HSP 1 Score: 137.117 bits (344), Expect = 4.692e-37
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 0
Query:  129 LATPFCCFLAA-------DKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTC 216
            + +P+   +++       +KR+ EA++I SKYPDRIPVICEKADRS+IPDIDKKKYLVPADLTVGQF YVIRKRI+L PEKAIFIF+NN +PPT 
Sbjct:   20 IKSPYIAVMSSFKKEHPFEKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTA 114          
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|813198779|ref|XP_012208972.1| (autophagy-like protein 8 [Saprolegnia parasitica CBS 223.65] >gi|641525894|gb|KDO20302.1| autophagy-like protein 8 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 135.961 bits (341), Expect = 5.114e-37
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 0
Query:  140 DKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTC 216
            +KR+ EA++I SKYPDRIPVICEKADRS+IPDIDKKKYLVPADLTVGQF YVIRKRI+L PEKAIFIF+NN +PPT 
Sbjct:   11 EKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTA 87          
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|669141776|ref|XP_008606450.1| (autophagy-like protein 8 [Saprolegnia diclina VS20] >gi|530741734|gb|EQC39976.1| autophagy-like protein 8 [Saprolegnia diclina VS20])

HSP 1 Score: 135.961 bits (341), Expect = 5.329e-37
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 0
Query:  140 DKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTC 216
            +KR+ EA++I SKYPDRIPVICEKADRS+IPDIDKKKYLVPADLTVGQF YVIRKRI+L PEKAIFIF+NN +PPT 
Sbjct:   11 EKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTA 87          
BLAST of EWM23068.1 vs. NCBI_GenBank
Match: gi|298713025|emb|CBJ33449.1| (Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Ectocarpus siliculosus])

HSP 1 Score: 135.576 bits (340), Expect = 5.958e-37
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0
Query:  138 AADKRKGEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTC 216
            +ADKRK EAE+I +KYPDRIPVICEKADRS+IPDIDKKKYLVPADL+ GQF YVIRKRI+L PEKAIFIFVN+ IP T 
Sbjct:    9 SADKRKSEAERIRAKYPDRIPVICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQTS 87          
The following BLAST results are available for this feature:
BLAST of EWM23068.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103894|gb|EWM23068.1|0.000e+0100.00autophagy protein, partial [Nannochloropsis gadita... [more]
gi|397567046|gb|EJK45363.1|5.433e-4059.23hypothetical protein THAOC_36026 [Thalassiosira oc... [more]
gi|673037584|ref|XP_008872753.1|9.117e-3882.05hypothetical protein H310_08680 [Aphanomyces invad... [more]
gi|698798870|ref|XP_009832464.1|1.195e-3783.12hypothetical protein H257_08331 [Aphanomyces astac... [more]
gi|1173955555|gb|OQS02504.1|3.376e-3781.82autophagy-related protein [Thraustotheca clavata][more]
gi|301117470|ref|XP_002906463.1|3.656e-3781.82autophagy-related protein, putative [Phytophthora ... [more]
gi|953502622|emb|CEG36286.1|4.692e-3767.37autophagy-related protein 8 precursor [Plasmopara ... [more]
gi|813198779|ref|XP_012208972.1|5.114e-3781.82autophagy-like protein 8 [Saprolegnia parasitica C... [more]
gi|669141776|ref|XP_008606450.1|5.329e-3781.82autophagy-like protein 8 [Saprolegnia diclina VS20... [more]
gi|298713025|emb|CBJ33449.1|5.958e-3781.01Microtubule-associated anchor protein involved in ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7625rna7625Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications