EWM23084.1, cds7589 (CDS) Nannochloropsis gaditana

Overview
NameEWM23084.1
Unique Namecds7589
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:369157..369431 +
Alignment locationCM002472.1:369478..369484 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23084.1
Productnad-dependent malic
Orig transcript idgnl|cribi|Naga_103832g1.10177.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:369157..369431 +
CM002472.1supercontigCM002472.1:369478..369484 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0004471malate dehydrogenase (decarboxylating) (NAD+) activity
GO:0051287NAD binding
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR012302Malic_NAD-bd
Homology
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|585103936|gb|EWM23084.1| (nad-dependent malic [Nannochloropsis gaditana])

HSP 1 Score: 189.889 bits (481), Expect = 2.905e-61
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:    1 MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAYFP 93
            MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAYFP
Sbjct:    1 MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAYFP 93          
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|325190506|emb|CCA25004.1| (NADdependent malic enzyme putative [Albugo laibachii Nc14])

HSP 1 Score: 109.768 bits (273), Expect = 5.148e-26
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 0
Query:    1 MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAY 91
            + DKDGL+G +R   L S Q  F R+ LPD + LLEV K V+PT+LLGLSA +G F +E+VRE+A+HT  P +FPLSNPT+ AECT  +AY
Sbjct:  413 IVDKDGLIGNSRST-LASGQKYFARAGLPDQISLLEVVKHVKPTMLLGLSAAKGAFTQEVVREMAQHTRNPIIFPLSNPTSVAECTAKQAY 502          
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|635371552|emb|CCI40262.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 105.916 bits (263), Expect = 1.131e-24
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 0
Query:    1 MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAY 91
            + DK GL+G +R N L S Q  F  +DLPD + LLEV K V+PT+LLGLSA +G F E+++RE+A+H   P +FPLSNPT+ AECT  +AY
Sbjct:  392 IVDKGGLIGGSR-NTLASGQKYFASADLPDRISLLEVIKHVKPTMLLGLSAAKGAFTEDVIREMAQHVRHPIIFPLSNPTSVAECTAKQAY 481          
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|551657030|ref|XP_005831287.1| (hypothetical protein GUITHDRAFT_95097 [Guillardia theta CCMP2712] >gi|428175417|gb|EKX44307.1| hypothetical protein GUITHDRAFT_95097 [Guillardia theta CCMP2712])

HSP 1 Score: 105.531 bits (262), Expect = 1.146e-24
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 0
Query:    1 MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAY 91
            + DKDG L   R  +LT +Q  F R D+  G+ LL+V K+ +PTIL+GLSA  GLF EE+VRE+  H P+PF+FPLSNPT +AEC+  +AY
Sbjct:  282 VVDKDGPLTVDRLGKLTKEQSVFARDDMALGMTLLDVVKQFKPTILMGLSAVGGLFTEEIVREVKVHCPQPFIFPLSNPTANAECSAEDAY 372          
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|673028026|ref|XP_008867974.1| (hypothetical protein H310_05114 [Aphanomyces invadans] >gi|574476747|gb|ETW03745.1| hypothetical protein H310_05114 [Aphanomyces invadans])

HSP 1 Score: 105.145 bits (261), Expect = 2.255e-24
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 0
Query:    3 DKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAY 91
            D+ GLLG  R++  + QQ  F R+D+PD   LL+V K+V+PT++LGLSA RG F EE VRE+A+H   P VFPLSNPT+ AECT  +AY
Sbjct:  383 DQFGLLGDTRRDMTSGQQF-FARNDVPDKTSLLDVIKKVKPTMILGLSAARGAFTEECVREMAKHVDMPIVFPLSNPTSVAECTAQQAY 470          
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|698809662|ref|XP_009837860.1| (hypothetical protein H257_12382 [Aphanomyces astaci] >gi|574107118|gb|ETV72632.1| hypothetical protein H257_12382 [Aphanomyces astaci])

HSP 1 Score: 101.679 bits (252), Expect = 3.202e-23
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 0
Query:    3 DKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAY 91
            D+ GLLG++R + LTS Q  F R DL D   LL+V K+V+PT++LGLSA RG F EE +RE+A+H   P VFPLSNPT+ AECT  +AY
Sbjct:  382 DQFGLLGESRTD-LTSGQQFFARPDLTDKTSLLDVIKQVKPTMILGLSAARGAFTEECIREMAKHVEMPIVFPLSNPTSVAECTAQQAY 469          
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|953486573|emb|CEG49476.1| (nad-dependent malic [Plasmopara halstedii])

HSP 1 Score: 101.679 bits (252), Expect = 3.680e-23
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 0
Query:    1 MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAY 91
            + D+ GLLG++R++ L S Q  F RSDL D   L++V KRV+PT+L+GLSA  G F +E V E+A+HT +P VFPLSNPT+ AECT  +AY
Sbjct:  395 ILDQYGLLGESRES-LNSGQQYFSRSDLADKTNLVDVIKRVKPTMLMGLSAAAGAFTQEAVEEMAKHTKQPIVFPLSNPTSVAECTAEQAY 484          
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|1173942785|gb|OQR91730.1| (NAD-dependent malic enzyme [Thraustotheca clavata])

HSP 1 Score: 100.138 bits (248), Expect = 1.511e-22
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 0
Query:    1 MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAY 91
            + D+ GL+   R N +TS Q  F R+DLPD + L+++ K V+PT+LLGLSA RG F +E ++E+A+H  +P VFPLSNPT  AECT  EAY
Sbjct:  403 VVDQFGLMTSERTN-MTSGQTFFARTDLPDKMSLVDLVKEVKPTMLLGLSAARGAFTKEALQEMAKHVAQPIVFPLSNPTAVAECTAQEAY 492          
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|1069940926|ref|XP_018297973.1| (hypothetical protein PHYBLDRAFT_121547 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026595554|gb|OAD79933.1| hypothetical protein PHYBLDRAFT_121547 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 99.7525 bits (247), Expect = 1.590e-22
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = 0
Query:    1 MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAY 91
            M D+DGLLG  R   L  +Q  +++ D+ D L L +V ++V+PT++LGL+  RG+F E+ +R +A+HT +P VFPLSNP T AECT  EA+
Sbjct:  374 MLDQDGLLGAVRDTPLDERQQSYVKHDMADRLTLEQVVEKVKPTVILGLTGIRGVFTEKAIRTMAQHTEKPVVFPLSNPDTHAECTAEEAF 464          
BLAST of EWM23084.1 vs. NCBI_GenBank
Match: gi|1210516779|dbj|GAX24268.1| (malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [Fistulifera solaris])

HSP 1 Score: 98.9821 bits (245), Expect = 3.411e-22
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 0
Query:    1 MCDKDGLLGQARQNRLTSQQLEFMRSDLPDGLPLLEVAKRVRPTILLGLSAQRGLFKEELVREIARHTPRPFVFPLSNPTTSAECTPSEAY 91
            +CD  GLLG+ R + L  +Q EF R D   GLPLL+V K+ +PTILLG++A  GLF  EL+ E++ +  RP +FPLSNPT  AECT  +AY
Sbjct:  376 ICDHKGLLGKERCHELNPEQQEFAR-DEDSGLPLLDVVKKYKPTILLGVTAVGGLFTRELISEMSVNCERPIIFPLSNPTAKAECTAEQAY 465          
The following BLAST results are available for this feature:
BLAST of EWM23084.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103936|gb|EWM23084.1|2.905e-61100.00nad-dependent malic [Nannochloropsis gaditana][more]
gi|325190506|emb|CCA25004.1|5.148e-2657.14NADdependent malic enzyme putative [Albugo laibach... [more]
gi|635371552|emb|CCI40262.1|1.131e-2454.95unnamed protein product [Albugo candida][more]
gi|551657030|ref|XP_005831287.1|1.146e-2453.85hypothetical protein GUITHDRAFT_95097 [Guillardia ... [more]
gi|673028026|ref|XP_008867974.1|2.255e-2456.18hypothetical protein H310_05114 [Aphanomyces invad... [more]
gi|698809662|ref|XP_009837860.1|3.202e-2357.30hypothetical protein H257_12382 [Aphanomyces astac... [more]
gi|953486573|emb|CEG49476.1|3.680e-2354.95nad-dependent malic [Plasmopara halstedii][more]
gi|1173942785|gb|OQR91730.1|1.511e-2252.75NAD-dependent malic enzyme [Thraustotheca clavata][more]
gi|1069940926|ref|XP_018297973.1|1.590e-2248.35hypothetical protein PHYBLDRAFT_121547 [Phycomyces... [more]
gi|1210516779|dbj|GAX24268.1|3.411e-2252.75malate dehydrogenase (oxaloacetate-decarboxylating... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7609rna7609Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications