EWM23106.1, cds7568 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM23106.1 vs. NCBI_GenBank
Match: gi|585103973|gb|EWM23106.1| (hypothetical protein Naga_100643g1 [Nannochloropsis gaditana]) HSP 1 Score: 1837 bits (4757), Expect = 0.000e+0 Identity = 932/932 (100.00%), Postives = 932/932 (100.00%), Query Frame = 0
Query: 1 MEDLLIRGDPAAALDLALRHSLFVEALLLAGHVPQHAVQPGSGGREGGGEVGRGHAAPQQSRPQLTPVQQVIVAYSQASLPSGLPFHALCLHLTEQPLLSPSPSASSAASHALAGPGNPFARAQQLQQQHQAKGQGSPSLPESDGPSPLPLSHHWKRTLALLLSLPPSSSPCTPALPMSSPVPGATAARSPASSAAAAFTPAPSPNHAILQLGDSLMRESPPKIREAHACYLIGGLLPGGGDEGGREDGPEDGRLSFLLVGMDARKEGGKRLGTPEAVEAFYRADILDFLRQHYSHYRRLGGGGGGVGRSGLAVQAHQSGGKETGVLPPRPSCLLQYYRLQMAKALAEGGYMWEALDYAKSVKAFLLPFLTWDVVEGRITHFVLPPSLPPSLAPLWTRTLAQEAIVFQARVEDEVGREGVRPKPLVAPVRRSSVQVGKGIVSGLMRNLGSLVQETIHKSVFEEDAGREEPVEKKEGGKEGRTVTEGLYAPFVYKGPWGRVVGRGGGEEGGREGKREGENALDNGPETAPFALRRFASAPAKPSSTPVPQQPPQQPQQQQQQAQHQQQPKQPGLPPNIPITASTSPSSSTSSTPSSPHPPPNQWYPQGAMPRKSSSLVPSVGSSHPSSLSCSASGTSYASAVEDMSVSQHTPMPPPSSLPAMVPPLPPPGRQVQRTADLNHVGGKGESAEGGRDGEGSSLAHPPALPPSVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIKKPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPMGGVPAGGGHGAGNEGGNGGPMDALSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGGGGGGGRGQGTAPGMAGRGGEAGGGPRFFVPRKLTEQEQQEQQHQQQQQPGQQQHE 932
MEDLLIRGDPAAALDLALRHSLFVEALLLAGHVPQHAVQPGSGGREGGGEVGRGHAAPQQSRPQLTPVQQVIVAYSQASLPSGLPFHALCLHLTEQPLLSPSPSASSAASHALAGPGNPFARAQQLQQQHQAKGQGSPSLPESDGPSPLPLSHHWKRTLALLLSLPPSSSPCTPALPMSSPVPGATAARSPASSAAAAFTPAPSPNHAILQLGDSLMRESPPKIREAHACYLIGGLLPGGGDEGGREDGPEDGRLSFLLVGMDARKEGGKRLGTPEAVEAFYRADILDFLRQHYSHYRRLGGGGGGVGRSGLAVQAHQSGGKETGVLPPRPSCLLQYYRLQMAKALAEGGYMWEALDYAKSVKAFLLPFLTWDVVEGRITHFVLPPSLPPSLAPLWTRTLAQEAIVFQARVEDEVGREGVRPKPLVAPVRRSSVQVGKGIVSGLMRNLGSLVQETIHKSVFEEDAGREEPVEKKEGGKEGRTVTEGLYAPFVYKGPWGRVVGRGGGEEGGREGKREGENALDNGPETAPFALRRFASAPAKPSSTPVPQQPPQQPQQQQQQAQHQQQPKQPGLPPNIPITASTSPSSSTSSTPSSPHPPPNQWYPQGAMPRKSSSLVPSVGSSHPSSLSCSASGTSYASAVEDMSVSQHTPMPPPSSLPAMVPPLPPPGRQVQRTADLNHVGGKGESAEGGRDGEGSSLAHPPALPPSVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIKKPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPMGGVPAGGGHGAGNEGGNGGPMDALSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGGGGGGGRGQGTAPGMAGRGGEAGGGPRFFVPRKLTEQEQQEQQHQQQQQPGQQQHE
Sbjct: 1 MEDLLIRGDPAAALDLALRHSLFVEALLLAGHVPQHAVQPGSGGREGGGEVGRGHAAPQQSRPQLTPVQQVIVAYSQASLPSGLPFHALCLHLTEQPLLSPSPSASSAASHALAGPGNPFARAQQLQQQHQAKGQGSPSLPESDGPSPLPLSHHWKRTLALLLSLPPSSSPCTPALPMSSPVPGATAARSPASSAAAAFTPAPSPNHAILQLGDSLMRESPPKIREAHACYLIGGLLPGGGDEGGREDGPEDGRLSFLLVGMDARKEGGKRLGTPEAVEAFYRADILDFLRQHYSHYRRLGGGGGGVGRSGLAVQAHQSGGKETGVLPPRPSCLLQYYRLQMAKALAEGGYMWEALDYAKSVKAFLLPFLTWDVVEGRITHFVLPPSLPPSLAPLWTRTLAQEAIVFQARVEDEVGREGVRPKPLVAPVRRSSVQVGKGIVSGLMRNLGSLVQETIHKSVFEEDAGREEPVEKKEGGKEGRTVTEGLYAPFVYKGPWGRVVGRGGGEEGGREGKREGENALDNGPETAPFALRRFASAPAKPSSTPVPQQPPQQPQQQQQQAQHQQQPKQPGLPPNIPITASTSPSSSTSSTPSSPHPPPNQWYPQGAMPRKSSSLVPSVGSSHPSSLSCSASGTSYASAVEDMSVSQHTPMPPPSSLPAMVPPLPPPGRQVQRTADLNHVGGKGESAEGGRDGEGSSLAHPPALPPSVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIKKPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPMGGVPAGGGHGAGNEGGNGGPMDALSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGGGGGGGRGQGTAPGMAGRGGEAGGGPRFFVPRKLTEQEQQEQQHQQQQQPGQQQHE 932
BLAST of EWM23106.1 vs. NCBI_GenBank
Match: gi|953487906|emb|CEG48280.1| (Regucalcin gene promoter region-related protein (RGPR) [Plasmopara halstedii]) HSP 1 Score: 76.6406 bits (187), Expect = 2.200e-10 Identity = 68/189 (35.98%), Postives = 98/189 (51.85%), Query Frame = 0
Query: 705 LPPSVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIK---KPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASL--KPPPTGPM---------GGVPAGGGHGA-GNEGGNGGPMDA-LSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGG 877
L S+PA D ST AS+ G+++ P +K ARS + SG+S G G + L+ + K + A LGE+MEAYFD+DK RW+FPG E ED+++ PPP GP+ GVP G + A G+ P D L+A+MAPPP L +R+ + A + P+ G+ + G
Sbjct: 2472 LTASLPALDASTVSGPASDKGRAS-----PRLKKSARSKTPPPSGSS-----KGSGWLSGLSSFIVTKMNPEAKVAKLGEQMEAYFDEDKKRWVFPG----ESAEDSTMPSAPPPIGPVSSSAPGSNAAGVPPIGTNSAPGSVSSGPAPSDDPLAALMAPPPSYRL-MRKDPLAAMMAPPSRPGLYAHG 2645
BLAST of EWM23106.1 vs. NCBI_GenBank
Match: gi|695405985|ref|XP_009523981.1| (hypothetical protein PHYSODRAFT_262855 [Phytophthora sojae] >gi|348681448|gb|EGZ21264.1| hypothetical protein PHYSODRAFT_262855 [Phytophthora sojae]) HSP 1 Score: 69.3218 bits (168), Expect = 3.997e-8 Identity = 67/189 (35.45%), Postives = 94/189 (49.74%), Query Frame = 0
Query: 708 SVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIKKPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPM-GGVPAGGGHGAGNEGGNGGP----------MDALSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGGGGGGGRGQ 885
S+P TD + +S+ GK++ K+ VK ARS + SG+S + G G+ +A + + V A LGE+MEAY+D+ RW+FPG+ EE S PPTGP+ G P GA G N P D L+A+MAPPP L +++ + A + PA GM G GG Q
Sbjct: 2600 SLPPTDAAAMSGPSSDKGKASPKFKS--VKKPARSKTPPPSGSSKSSSGWLSGISSFIATKMNPEAKV-AKLGEQMEAYYDEKTKRWVFPGETASEEPTMPSA--PPTGPLPGSAPGSSATGAPPPGANSAPGSMSSGPAPSNDPLAALMAPPPSHML-MKKDPLAAMMAPPARSGMYGGARRGGSTAQ 2782
BLAST of EWM23106.1 vs. NCBI_GenBank
Match: gi|301121618|ref|XP_002908536.1| (COPII coat assembly protein SEC16, putative [Phytophthora infestans T30-4] >gi|262103567|gb|EEY61619.1| COPII coat assembly protein SEC16, putative [Phytophthora infestans T30-4]) HSP 1 Score: 68.5514 bits (166), Expect = 6.482e-8 Identity = 71/208 (34.13%), Postives = 92/208 (44.23%), Query Frame = 0
Query: 694 GEGSSLAHPPALPP--------SVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGS-GGGMVGRLAGLLGIK---KPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPMGGVPAGGGHGAGNEGGNGGP----------MDALSAMMAPPPLRGLPVRR--ATVGAPIGGPAGLGMGSGG 877
G+ SSL+ P L S+P TD + +S+ GK++ KA +G S T P+G S G G + L+ + K + A LGE+MEAYFD+D RWIFPG+ EE S PPTGP G G G N P D L+A+MAPPP L + A + AP P G GG
Sbjct: 2418 GDISSLSQPKTLASGLVSEMAASLPPTDAAAMSGPSSDKGKASPKLKA---------KKSGRSKTPPPSGSSKGSGWLSGLSSFIATKMNPEAKVAKLGEQMEAYFDEDAKRWIFPGEAAAEEPTMPSA--PPTGPTPASAPGSSVGVPPVGSNSAPGSISSGPAPSNDPLAALMAPPPSHMLMKKDPLAAMMAPPSRPGVYGARRGG 2614 The following BLAST results are available for this feature:
BLAST of EWM23106.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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