EWM23106.1, cds7568 (CDS) Nannochloropsis gaditana

Overview
NameEWM23106.1
Unique Namecds7568
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:308073..310871 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23106.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100643g1.9562.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:308073..310871 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23106.1 vs. NCBI_GenBank
Match: gi|585103973|gb|EWM23106.1| (hypothetical protein Naga_100643g1 [Nannochloropsis gaditana])

HSP 1 Score: 1837 bits (4757), Expect = 0.000e+0
Identity = 932/932 (100.00%), Postives = 932/932 (100.00%), Query Frame = 0
Query:    1 MEDLLIRGDPAAALDLALRHSLFVEALLLAGHVPQHAVQPGSGGREGGGEVGRGHAAPQQSRPQLTPVQQVIVAYSQASLPSGLPFHALCLHLTEQPLLSPSPSASSAASHALAGPGNPFARAQQLQQQHQAKGQGSPSLPESDGPSPLPLSHHWKRTLALLLSLPPSSSPCTPALPMSSPVPGATAARSPASSAAAAFTPAPSPNHAILQLGDSLMRESPPKIREAHACYLIGGLLPGGGDEGGREDGPEDGRLSFLLVGMDARKEGGKRLGTPEAVEAFYRADILDFLRQHYSHYRRLGGGGGGVGRSGLAVQAHQSGGKETGVLPPRPSCLLQYYRLQMAKALAEGGYMWEALDYAKSVKAFLLPFLTWDVVEGRITHFVLPPSLPPSLAPLWTRTLAQEAIVFQARVEDEVGREGVRPKPLVAPVRRSSVQVGKGIVSGLMRNLGSLVQETIHKSVFEEDAGREEPVEKKEGGKEGRTVTEGLYAPFVYKGPWGRVVGRGGGEEGGREGKREGENALDNGPETAPFALRRFASAPAKPSSTPVPQQPPQQPQQQQQQAQHQQQPKQPGLPPNIPITASTSPSSSTSSTPSSPHPPPNQWYPQGAMPRKSSSLVPSVGSSHPSSLSCSASGTSYASAVEDMSVSQHTPMPPPSSLPAMVPPLPPPGRQVQRTADLNHVGGKGESAEGGRDGEGSSLAHPPALPPSVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIKKPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPMGGVPAGGGHGAGNEGGNGGPMDALSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGGGGGGGRGQGTAPGMAGRGGEAGGGPRFFVPRKLTEQEQQEQQHQQQQQPGQQQHE 932
            MEDLLIRGDPAAALDLALRHSLFVEALLLAGHVPQHAVQPGSGGREGGGEVGRGHAAPQQSRPQLTPVQQVIVAYSQASLPSGLPFHALCLHLTEQPLLSPSPSASSAASHALAGPGNPFARAQQLQQQHQAKGQGSPSLPESDGPSPLPLSHHWKRTLALLLSLPPSSSPCTPALPMSSPVPGATAARSPASSAAAAFTPAPSPNHAILQLGDSLMRESPPKIREAHACYLIGGLLPGGGDEGGREDGPEDGRLSFLLVGMDARKEGGKRLGTPEAVEAFYRADILDFLRQHYSHYRRLGGGGGGVGRSGLAVQAHQSGGKETGVLPPRPSCLLQYYRLQMAKALAEGGYMWEALDYAKSVKAFLLPFLTWDVVEGRITHFVLPPSLPPSLAPLWTRTLAQEAIVFQARVEDEVGREGVRPKPLVAPVRRSSVQVGKGIVSGLMRNLGSLVQETIHKSVFEEDAGREEPVEKKEGGKEGRTVTEGLYAPFVYKGPWGRVVGRGGGEEGGREGKREGENALDNGPETAPFALRRFASAPAKPSSTPVPQQPPQQPQQQQQQAQHQQQPKQPGLPPNIPITASTSPSSSTSSTPSSPHPPPNQWYPQGAMPRKSSSLVPSVGSSHPSSLSCSASGTSYASAVEDMSVSQHTPMPPPSSLPAMVPPLPPPGRQVQRTADLNHVGGKGESAEGGRDGEGSSLAHPPALPPSVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIKKPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPMGGVPAGGGHGAGNEGGNGGPMDALSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGGGGGGGRGQGTAPGMAGRGGEAGGGPRFFVPRKLTEQEQQEQQHQQQQQPGQQQHE
Sbjct:    1 MEDLLIRGDPAAALDLALRHSLFVEALLLAGHVPQHAVQPGSGGREGGGEVGRGHAAPQQSRPQLTPVQQVIVAYSQASLPSGLPFHALCLHLTEQPLLSPSPSASSAASHALAGPGNPFARAQQLQQQHQAKGQGSPSLPESDGPSPLPLSHHWKRTLALLLSLPPSSSPCTPALPMSSPVPGATAARSPASSAAAAFTPAPSPNHAILQLGDSLMRESPPKIREAHACYLIGGLLPGGGDEGGREDGPEDGRLSFLLVGMDARKEGGKRLGTPEAVEAFYRADILDFLRQHYSHYRRLGGGGGGVGRSGLAVQAHQSGGKETGVLPPRPSCLLQYYRLQMAKALAEGGYMWEALDYAKSVKAFLLPFLTWDVVEGRITHFVLPPSLPPSLAPLWTRTLAQEAIVFQARVEDEVGREGVRPKPLVAPVRRSSVQVGKGIVSGLMRNLGSLVQETIHKSVFEEDAGREEPVEKKEGGKEGRTVTEGLYAPFVYKGPWGRVVGRGGGEEGGREGKREGENALDNGPETAPFALRRFASAPAKPSSTPVPQQPPQQPQQQQQQAQHQQQPKQPGLPPNIPITASTSPSSSTSSTPSSPHPPPNQWYPQGAMPRKSSSLVPSVGSSHPSSLSCSASGTSYASAVEDMSVSQHTPMPPPSSLPAMVPPLPPPGRQVQRTADLNHVGGKGESAEGGRDGEGSSLAHPPALPPSVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIKKPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPMGGVPAGGGHGAGNEGGNGGPMDALSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGGGGGGGRGQGTAPGMAGRGGEAGGGPRFFVPRKLTEQEQQEQQHQQQQQPGQQQHE 932          
BLAST of EWM23106.1 vs. NCBI_GenBank
Match: gi|953487906|emb|CEG48280.1| (Regucalcin gene promoter region-related protein (RGPR) [Plasmopara halstedii])

HSP 1 Score: 76.6406 bits (187), Expect = 2.200e-10
Identity = 68/189 (35.98%), Postives = 98/189 (51.85%), Query Frame = 0
Query:  705 LPPSVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIK---KPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASL--KPPPTGPM---------GGVPAGGGHGA-GNEGGNGGPMDA-LSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGG 877
            L  S+PA D ST    AS+ G+++     P +K  ARS +   SG+S      G G +  L+  +  K   +   A LGE+MEAYFD+DK RW+FPG    E  ED+++   PPP GP+          GVP  G + A G+      P D  L+A+MAPPP   L +R+  + A +  P+  G+ + G
Sbjct: 2472 LTASLPALDASTVSGPASDKGRAS-----PRLKKSARSKTPPPSGSS-----KGSGWLSGLSSFIVTKMNPEAKVAKLGEQMEAYFDEDKKRWVFPG----ESAEDSTMPSAPPPIGPVSSSAPGSNAAGVPPIGTNSAPGSVSSGPAPSDDPLAALMAPPPSYRL-MRKDPLAAMMAPPSRPGLYAHG 2645          
BLAST of EWM23106.1 vs. NCBI_GenBank
Match: gi|695405985|ref|XP_009523981.1| (hypothetical protein PHYSODRAFT_262855 [Phytophthora sojae] >gi|348681448|gb|EGZ21264.1| hypothetical protein PHYSODRAFT_262855 [Phytophthora sojae])

HSP 1 Score: 69.3218 bits (168), Expect = 3.997e-8
Identity = 67/189 (35.45%), Postives = 94/189 (49.74%), Query Frame = 0
Query:  708 SVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGSGGGMVGRLAGLLGIKKPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPM-GGVPAGGGHGAGNEGGNGGP----------MDALSAMMAPPPLRGLPVRRATVGAPIGGPAGLGMGSGGGGGGGRGQ 885
            S+P TD +     +S+ GK++   K+  VK  ARS +   SG+S  + G   G+   +A  +  +  V A LGE+MEAY+D+   RW+FPG+   EE    S   PPTGP+ G  P     GA   G N  P           D L+A+MAPPP   L +++  + A +  PA  GM  G   GG   Q
Sbjct: 2600 SLPPTDAAAMSGPSSDKGKASPKFKS--VKKPARSKTPPPSGSSKSSSGWLSGISSFIATKMNPEAKV-AKLGEQMEAYYDEKTKRWVFPGETASEEPTMPSA--PPTGPLPGSAPGSSATGAPPPGANSAPGSMSSGPAPSNDPLAALMAPPPSHML-MKKDPLAAMMAPPARSGMYGGARRGGSTAQ 2782          
BLAST of EWM23106.1 vs. NCBI_GenBank
Match: gi|301121618|ref|XP_002908536.1| (COPII coat assembly protein SEC16, putative [Phytophthora infestans T30-4] >gi|262103567|gb|EEY61619.1| COPII coat assembly protein SEC16, putative [Phytophthora infestans T30-4])

HSP 1 Score: 68.5514 bits (166), Expect = 6.482e-8
Identity = 71/208 (34.13%), Postives = 92/208 (44.23%), Query Frame = 0
Query:  694 GEGSSLAHPPALPP--------SVPATDISTTGSTASNSGKSTSVHKAPAVKSVARSSSAGGSGTSTPTGGS-GGGMVGRLAGLLGIK---KPVTADLGEKMEAYFDKDKNRWIFPGQDGEEEEEDASLKPPPTGPMGGVPAGGGHGAGNEGGNGGP----------MDALSAMMAPPPLRGLPVRR--ATVGAPIGGPAGLGMGSGG 877
            G+ SSL+ P  L          S+P TD +     +S+ GK++   KA           +G S T  P+G S G G +  L+  +  K   +   A LGE+MEAYFD+D  RWIFPG+   EE    S   PPTGP      G   G    G N  P           D L+A+MAPPP   L  +   A + AP   P   G   GG
Sbjct: 2418 GDISSLSQPKTLASGLVSEMAASLPPTDAAAMSGPSSDKGKASPKLKA---------KKSGRSKTPPPSGSSKGSGWLSGLSSFIATKMNPEAKVAKLGEQMEAYFDEDAKRWIFPGEAAAEEPTMPSA--PPTGPTPASAPGSSVGVPPVGSNSAPGSISSGPAPSNDPLAALMAPPPSHMLMKKDPLAAMMAPPSRPGVYGARRGG 2614          
The following BLAST results are available for this feature:
BLAST of EWM23106.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103973|gb|EWM23106.1|0.000e+0100.00hypothetical protein Naga_100643g1 [Nannochloropsi... [more]
gi|953487906|emb|CEG48280.1|2.200e-1035.98Regucalcin gene promoter region-related protein (R... [more]
gi|695405985|ref|XP_009523981.1|3.997e-835.45hypothetical protein PHYSODRAFT_262855 [Phytophtho... [more]
gi|301121618|ref|XP_002908536.1|6.482e-834.13COPII coat assembly protein SEC16, putative [Phyto... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7588rna7588Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications