EWM23115.1, cds7560 (CDS) Nannochloropsis gaditana

Overview
NameEWM23115.1
Unique Namecds7560
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:293307..294788 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23115.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100316g6.2358.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:293307..294788 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM23115.1 vs. NCBI_GenBank
Match: gi|585103988|gb|EWM23115.1| (hypothetical protein Naga_100316g6 [Nannochloropsis gaditana])

HSP 1 Score: 1033.86 bits (2672), Expect = 0.000e+0
Identity = 493/493 (100.00%), Postives = 493/493 (100.00%), Query Frame = 0
Query:    1 MRCNESTGKASKSVSSSSILSRPSAIKACLRWDLKPWLILVSTACIMLWLSATLVPTDLYKKIALAQVKKKPKLFLHIGAHKTGSSYIKYQMMRSRDFLLQRGIMLPMGCYGDTNSPSSLFRAVAMQLQGMKIPEAKNCPENPLGDLTRTLESIHRDNDSQNIFISSEHFDNLNDEMVAEVTKLFSNFQTTVVLYYRRKQEHLVSYYSEFAKRADPLKSPLHLSDFLWNVMAEVDPEADVSGPLPSVPTANGRNHIHGVCYKRVLETYGRHFGPENMVVVHYNGVMDAQKDPWEVLVREVMMLEMGKEATAEKGAKRSLQQGKGGTKINASLNPLTYSTAVLFYRWRWGNLRGQVNSTTSAAASPSPAEEPSQIDNTTRLPDTGCVSRFLKPLEDLLPKQCFDLRALASLWEAQERQSLNEMARKGSRLLYFDWAKDAAGDMRVVFNDANPSLPCQVHLEQLFEEHGENVLKTIPARFLPAFEQVAAKVDDKC 493
            MRCNESTGKASKSVSSSSILSRPSAIKACLRWDLKPWLILVSTACIMLWLSATLVPTDLYKKIALAQVKKKPKLFLHIGAHKTGSSYIKYQMMRSRDFLLQRGIMLPMGCYGDTNSPSSLFRAVAMQLQGMKIPEAKNCPENPLGDLTRTLESIHRDNDSQNIFISSEHFDNLNDEMVAEVTKLFSNFQTTVVLYYRRKQEHLVSYYSEFAKRADPLKSPLHLSDFLWNVMAEVDPEADVSGPLPSVPTANGRNHIHGVCYKRVLETYGRHFGPENMVVVHYNGVMDAQKDPWEVLVREVMMLEMGKEATAEKGAKRSLQQGKGGTKINASLNPLTYSTAVLFYRWRWGNLRGQVNSTTSAAASPSPAEEPSQIDNTTRLPDTGCVSRFLKPLEDLLPKQCFDLRALASLWEAQERQSLNEMARKGSRLLYFDWAKDAAGDMRVVFNDANPSLPCQVHLEQLFEEHGENVLKTIPARFLPAFEQVAAKVDDKC
Sbjct:    1 MRCNESTGKASKSVSSSSILSRPSAIKACLRWDLKPWLILVSTACIMLWLSATLVPTDLYKKIALAQVKKKPKLFLHIGAHKTGSSYIKYQMMRSRDFLLQRGIMLPMGCYGDTNSPSSLFRAVAMQLQGMKIPEAKNCPENPLGDLTRTLESIHRDNDSQNIFISSEHFDNLNDEMVAEVTKLFSNFQTTVVLYYRRKQEHLVSYYSEFAKRADPLKSPLHLSDFLWNVMAEVDPEADVSGPLPSVPTANGRNHIHGVCYKRVLETYGRHFGPENMVVVHYNGVMDAQKDPWEVLVREVMMLEMGKEATAEKGAKRSLQQGKGGTKINASLNPLTYSTAVLFYRWRWGNLRGQVNSTTSAAASPSPAEEPSQIDNTTRLPDTGCVSRFLKPLEDLLPKQCFDLRALASLWEAQERQSLNEMARKGSRLLYFDWAKDAAGDMRVVFNDANPSLPCQVHLEQLFEEHGENVLKTIPARFLPAFEQVAAKVDDKC 493          
BLAST of EWM23115.1 vs. NCBI_GenBank
Match: gi|585099714|gb|EWM20272.1| (hypothetical protein Naga_100167g8 [Nannochloropsis gaditana])

HSP 1 Score: 696.041 bits (1795), Expect = 0.000e+0
Identity = 332/493 (67.34%), Postives = 390/493 (79.11%), Query Frame = 0
Query:    1 MRCNESTGKASKSVSSSSILSRPSAIKACLRWDLKPWLILVSTACIMLWLSATLVPTDLYKKIALAQVKKKPKLFLHIGAHKTGSSYIKYQMMRSRDFLLQRGIMLPMGCYGDTNSPSSLFRAVAMQLQGMKIPEAKNCPENPLGDLTRTLESIHRDNDSQNIFISSEHFDNLNDEMVAEVTKLFSNFQTTVVLYYRRKQEHLVSYYSEFAKRADPLKSPLHLSDFLWNVMAEVDPEADVSGPLPSVPTANGRNHIHGVCYKRVLETYGRHFGPENMVVVHYNGVMDAQKDPWEVLVREVMMLEMGKEATAEKGAKRSLQQGKGGTKINASLNPLTYSTAVLFYRWRWGNLRGQVNSTTSAAASPSPAEEPSQIDNTTRLPDTGCVSRFLKPLEDLLPKQCFDLRALASLWEAQERQSLNEMARKGSRLLYFDWAKDAAGDMRVVFNDANPSLPCQVHLEQLFEEHGENVLKTIPARFLPAFEQVAAKVDDKC 493
            MRCN+S  +  +S  +SS+ S P AI ACL   + P L+L+ TACIML L+  L P+ LY   ALA V+K PK+FLHIGAHKT ++YI+ +M+RS++FLLQRG++LP  C  DT +P+  F  V   LQG K  ++K C ENP  +L RTL SIHRDN SQNIFISSE +DNLNDEMVAEV KLFSNFQTTVV+YYRRK+EHLVSYYSEFAKR +PL  PL L DFLWNVMA+V+PEADVS PLPSVPTA G   I+G+CY RVLETY RHF P+N+V+VHY+GV+DA+KDPWEVL++EVMML M KEATAEKG K SLQQ    TKIN SL P +YS AV+FYRWRWGNL  Q N TT+  ASP PA +P+Q+ N  RLPD  CVSRFLKPLEDLLPKQCFD  AL SLWEAQERQ LNEMA+KGSRLLYF+WAKDAAGDMRV+F D N SLPCQVH+EQL +EHG +V +TIP+RFL  F+QVAAKVD+ C
Sbjct:    1 MRCNKSPLRPRRS-DNSSLFSCPRAINACLPRYVNPRLVLMITACIMLPLATILSPSQLYNNSALAHVRKMPKIFLHIGAHKTATTYIQSKMVRSKEFLLQRGVILPSICSSDTEAPTYRFYEVPKYLQGTKFAKSKYCSENPFDELNRTLNSIHRDNVSQNIFISSEEYDNLNDEMVAEVAKLFSNFQTTVVVYYRRKKEHLVSYYSEFAKRGNPLTLPLPLGDFLWNVMAKVNPEADVSDPLPSVPTAGGHIPINGLCYNRVLETYSRHFDPKNVVIVHYDGVVDAEKDPWEVLLQEVMMLGMDKEATAEKGDKWSLQQATRPTKINGSLRPFSYSAAVIFYRWRWGNLTDQTNWTTTVTASPLPATQPTQVKNIIRLPDAECVSRFLKPLEDLLPKQCFDSTALTSLWEAQERQKLNEMAKKGSRLLYFEWAKDAAGDMRVIFKDLNSSLPCQVHMEQLLKEHGADVFRTIPSRFLSTFQQVAAKVDENC 492          
BLAST of EWM23115.1 vs. NCBI_GenBank
Match: gi|1011630924|ref|WP_062481290.1| (hypothetical protein [Lacimicrobium alkaliphilum] >gi|962032925|gb|ALS99239.1| hypothetical protein AT746_13895 [Lacimicrobium alkaliphilum])

HSP 1 Score: 72.4034 bits (176), Expect = 2.513e-10
Identity = 86/362 (23.76%), Postives = 137/362 (37.85%), Query Frame = 0
Query:   73 KLFLHIGAHKTGSSYIKYQMMRSRDFLLQRGIMLPMGCYGDTNSPSSLFRAVAMQLQGMKIPEAKNCPENPLGDLTRTLESIHRD---NDSQNIFISSEHFDNLNDEMVAEVTKLFSNFQTTVVLYYRRKQEHLVSYYSEFAKRADPLKSPLHLSDFLWNVMAEVDPEADVSGPLPSVPTANGRNHIHGVCYKRVLETYGRHFGPENMVVVHYNGVMDA-------QKDPWEVLVREVMMLEMGKEATAEKGAKRSLQQGKGGTKINASLNPLTYSTAVLFYRWRWGNLRGQVNSTTSAAASPSPAEEPSQIDNTTRL--------PDTGCVSRFLKPL-EDLLPKQCFDLRALASLWEAQE 415
            KL LHIG HKTG++ I+  ++ +   L Q G + P+ C G + +  S    +A  L+  K+ + K           R L+ I  +      Q + +S E F  LN + VAE+  L  +F   V +Y+R   + ++S +SE  K                            S  L  +   N R     V Y R L ++ + FG E + V  Y+ +            D  E L+RE+   EM     A  G             +N+  +P+     V F     G +R   +   +         + +  D   R          D       L PL ED+LP++  DL    +L E++E
Sbjct:    2 KLILHIGTHKTGTTAIQQFLLANEKALYQSGTLYPVSCLGQSKNQYSY---LATLLRHGKLTKVK-----------RDLKLIREEALAKRCQTVILSGEEFSTLNYQHVAELCDLLGDFDVEVKIYFRNAYDFVISAFSEINK---------------------------TSRSLTKIEKLNKRLS-RLVDYDRTLNSWCKVFGDEAVDVYSYDRIKHECIPHFLRSVDIDENLIRELTANEM---MNAYSG-------------VNSRFDPIASFLLVFF-----GKIRDSRDYDVAKETCGKIFSDKNSSDQLLRFLAHKYLKAKDVKYSHHKLLPLIEDILPEESIDLEQAHALLESRE 300          
BLAST of EWM23115.1 vs. NCBI_GenBank
Match: gi|659848831|ref|WP_029896349.1| (hypothetical protein [Desulfovibrio sp. L21-Syr-AB])

HSP 1 Score: 65.4698 bits (158), Expect = 6.586e-8
Identity = 47/163 (28.83%), Postives = 79/163 (48.47%), Query Frame = 0
Query:   71 KPKLFLHIGAHKTGSSYIKYQMMRSRDFLLQRGIMLPMGC-YGDTNS---PSSLFRAVAMQLQGMKIP-------EAKNCPENPLGDLTRTLESIHRDNDSQNIFISSEHFDNLN-DEMVAEVTKL----FSNFQTTVVLYYRRKQEHLVSYYSEFAKRADPL 217
            + ++ LHIG  KT ++ +++ M  +R+ LL+RG+M P  C + DT     P+SL R       G ++P       EA    E   G++  +        D     +S+EHF N   D+  A +  L     ++F  TV+ Y RR   +L+S+Y++  K  + L
Sbjct:    2 RKRVVLHIGTFKTATTAMQHYMYDNREALLERGVMYPRVCSFRDTGHVVLPASLLRKC-----GRRVPFWLDVDREADYYWERVAGEIAAS--------DCHTAVLSTEHFSNFGQDDCAASLAPLAREYLADFDVTVLCYLRRPDHYLLSWYNQVVKMGEAL 151          
BLAST of EWM23115.1 vs. NCBI_GenBank
Match: gi|495553486|ref|WP_008278065.1| (hypothetical protein [Cyanothece sp. CCY0110] >gi|126618087|gb|EAZ88854.1| hypothetical protein CY0110_02832 [Cyanothece sp. CCY0110])

HSP 1 Score: 63.929 bits (154), Expect = 1.682e-7
Identity = 53/229 (23.14%), Postives = 101/229 (44.10%), Query Frame = 0
Query:   63 IALAQVKKKPKLFLHIGAHKTGSSYIKYQMMRSRDFLLQRGIMLPMGCYGDTNSPSSLFRAVAMQLQGMKIPEAKNCPENPL--------GDLTRTLESIHRDNDSQNIFISSEHFDNLNDEMVAEVTKLFSNFQTTVVLYYRRKQEHLVSYYSEFAKRADPLKSPLHLSDFLWNVMAEVDPEADVSGPLPSVPTANGRNHIHGVCYKRVLETYGRHFGPENMVVVHYN 283
            I+   ++ +P ++LHIG  KTG++ I+  + +  + LL+ GI+ P+       S +  +      L    I E ++   N +         D+ + +E        + I ISSEHF+ LN + +  + K  SN++  ++++ R++ E+  SYY +  K A       H    + N +A+   E +                     Y + L+ +   FG EN++V  +N
Sbjct:    2 ISTNYMRNQPLIYLHIGTFKTGTTSIQSFLSKKMNILLKEGILYPLS------SRTKKYPNAHHNLASELIKENRSYLPNEMYEMNAGIWKDVIKEIEEF----KGKKIIISSEHFNRLNIKEIEMIRKHLSNYEVKIIVFLRKQDEYFKSYYCQDVKIA-------HYWGDIRNYIAKYKNEGN---------------------YYQKLKPWKETFGQENIIVRLFN 192          
The following BLAST results are available for this feature:
BLAST of EWM23115.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585103988|gb|EWM23115.1|0.000e+0100.00hypothetical protein Naga_100316g6 [Nannochloropsi... [more]
gi|585099714|gb|EWM20272.1|0.000e+067.34hypothetical protein Naga_100167g8 [Nannochloropsi... [more]
gi|1011630924|ref|WP_062481290.1|2.513e-1023.76hypothetical protein [Lacimicrobium alkaliphilum] ... [more]
gi|659848831|ref|WP_029896349.1|6.586e-828.83hypothetical protein [Desulfovibrio sp. L21-Syr-AB... [more]
gi|495553486|ref|WP_008278065.1|1.682e-723.14hypothetical protein [Cyanothece sp. CCY0110] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7580rna7580Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications