EWM23118.1, cds7559 (CDS) Nannochloropsis gaditana

Overview
NameEWM23118.1
Unique Namecds7559
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:292280..292283 -
Alignment locationCM002472.1:291815..292017 -
Alignment locationCM002472.1:291160..291462 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23118.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100316g5.2361.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:292280..292283 -
CM002472.1supercontigCM002472.1:291815..292017 -
CM002472.1supercontigCM002472.1:291160..291462 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23118.1 vs. NCBI_GenBank
Match: gi|585103991|gb|EWM23118.1| (hypothetical protein Naga_100316g5 [Nannochloropsis gaditana])

HSP 1 Score: 352.829 bits (904), Expect = 2.716e-123
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query:    1 MRGGGAPLPVPPPPQQQSHHLAQVVESHGAGSKKGNSGTYKTIEEVKCLNFVILTHSMGRVFNNVGPDLKETKENKAVGVERPRYDLDFRHSVECFRSFDIAFEKDEVMTKAQRSVEALASAVYYMCSYVPTIGSRYATLPLTLAELGVFYIRADSPIAQPILRDPSRY 169
            MRGGGAPLPVPPPPQQQSHHLAQVVESHGAGSKKGNSGTYKTIEEVKCLNFVILTHSMGRVFNNVGPDLKETKENKAVGVERPRYDLDFRHSVECFRSFDIAFEKDEVMTKAQRSVEALASAVYYMCSYVPTIGSRYATLPLTLAELGVFYIRADSPIAQPILRDPSRY
Sbjct:    1 MRGGGAPLPVPPPPQQQSHHLAQVVESHGAGSKKGNSGTYKTIEEVKCLNFVILTHSMGRVFNNVGPDLKETKENKAVGVERPRYDLDFRHSVECFRSFDIAFEKDEVMTKAQRSVEALASAVYYMCSYVPTIGSRYATLPLTLAELGVFYIRADSPIAQPILRDPSRY 169          
BLAST of EWM23118.1 vs. NCBI_GenBank
Match: gi|553194407|ref|XP_005855949.1| (hypothetical protein NGA_0546300, partial [Nannochloropsis gaditana CCMP526] >gi|422293122|gb|EKU20422.1| hypothetical protein NGA_0546300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 145.206 bits (365), Expect = 4.952e-42
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query:    3 GGGAPLPVPPPPQQQSHHLAQVVESHGAGSKKGNSGTYKTIEEVKCLNFVILTHSMGRVFNNVGPDL 69
            GGGAPLPVPPPPQQQSHHLAQVVESHGAGSKKGNSGTYKTIEEVKCLNFVILTHSMGRVFNNVGPDL
Sbjct:   40 GGGAPLPVPPPPQQQSHHLAQVVESHGAGSKKGNSGTYKTIEEVKCLNFVILTHSMGRVFNNVGPDL 106          
The following BLAST results are available for this feature:
BLAST of EWM23118.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103991|gb|EWM23118.1|2.716e-123100.00hypothetical protein Naga_100316g5 [Nannochloropsi... [more]
gi|553194407|ref|XP_005855949.1|4.952e-42100.00hypothetical protein NGA_0546300, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7579rna7579Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications