EWM23143.1, cds7519 (CDS) Nannochloropsis gaditana

Overview
NameEWM23143.1
Unique Namecds7519
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:190196..190392 +
Alignment locationCM002472.1:190498..190596 +
Alignment locationCM002472.1:190804..190855 +
Alignment locationCM002472.1:190974..191419 +
Alignment locationCM002472.1:191629..191677 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23143.1
ProductProteasome, beta-type subunit, conserved site
Orig transcript idgnl|cribi|Naga_100043g25.7226.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:190196..190392 +
CM002472.1supercontigCM002472.1:190498..190596 +
CM002472.1supercontigCM002472.1:190804..190855 +
CM002472.1supercontigCM002472.1:190974..191419 +
CM002472.1supercontigCM002472.1:191629..191677 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR023333Proteasome_suB-type
IPR016050Proteasome_bsu_CS
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
Homology
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|585104024|gb|EWM23143.1| (Proteasome, beta-type subunit, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 582.022 bits (1499), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query:    1 MTFCTHSPLEHLPACASSEVVHLNTFVPSPSNPSNRPASDVCSSGTTKKENSYSFAENLTREIHGNNDPIIPWQLQSILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            MTFCTHSPLEHLPACASSEVVHLNTFVPSPSNPSNRPASDVCSSGTTKKENSYSFAENLTREIHGNNDPIIPWQLQSILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD
Sbjct:    1 MTFCTHSPLEHLPACASSEVVHLNTFVPSPSNPSNRPASDVCSSGTTKKENSYSFAENLTREIHGNNDPIIPWQLQSILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280          
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|298711226|emb|CBJ32446.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 317.39 bits (812), Expect = 9.115e-107
Identity = 145/204 (71.08%), Postives = 173/204 (84.80%), Query Frame = 0
Query:   77 SILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            SILEYNG A++AM GKNCV I SD R G QAQTVA +F K+ KM D+L VGL GLATD+ T+++LL FRLNLY+LREER+IKPETFSAL+SHILY+KRFGPYFVEP+VAGL+ EDNTPFIS  DLIGAPV   DFVV GTC  NLYG+CESF++PD++ ++LFE ++Q LL SVDRDALSGWG VVH+ITP+G+ S+TLK RQD
Sbjct:    2 SILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLK-EDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 204          
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|156389516|ref|XP_001635037.1| (predicted protein [Nematostella vectensis] >gi|156222126|gb|EDO42974.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 302.753 bits (774), Expect = 5.290e-101
Identity = 136/204 (66.67%), Postives = 173/204 (84.80%), Query Frame = 0
Query:   77 SILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            SI+EYNG A++AMVGKNCVAIA+D R G+QAQTV+C+F K+ +M ++LFVGL GLATD+QT+   L+FRLNLY+LRE R IKP+TF +++S++LYE+RFGPYFVEP++AGL  + N PFIS MDLIG P+  KDFVV+GTC+  +YG+CES + PDLEP+ LFE +SQ+LL +VDRDA+SGWGAVVHVI PD VT+RTLKAR D
Sbjct:    2 SIMEYNGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDVQTISSRLKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDPKTNEPFISSMDLIGCPMETKDFVVSGTCSEQMYGMCESLWVPDLEPDDLFETISQALLNAVDRDAVSGWGAVVHVIEPDKVTTRTLKARMD 205          
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|397628563|gb|EJK68962.1| (hypothetical protein THAOC_09830 [Thalassiosira oceanica])

HSP 1 Score: 302.368 bits (773), Expect = 6.021e-101
Identity = 138/204 (67.65%), Postives = 170/204 (83.33%), Query Frame = 0
Query:   77 SILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            SILEYNG A++AM GK+CVAIASD R G+  QTVA +F KV KM+DRL VGL+GLATD+QTL+QLLRFR+NLY+LREER++ PE F+ L+S++LYEKRFGPYF EP++AGL  +   PF+  MDLIGA   AKDF VAGTC  N+YG+CE+ +KPD+E E+LFE L+Q+LLASVDRDALSGWG VVH+IT +G+TSR LK RQD
Sbjct:    2 SILEYNGAAIIAMAGKDCVAIASDNRLGISYQTVAMDFKKVFKMNDRLMVGLAGLATDVQTLDQLLRFRMNLYELREEREMTPEVFTNLMSNMLYEKRFGPYFCEPVIAGLDPK-GKPFLGTMDLIGAQAMAKDFCVAGTCDGNMYGMCETLWKPDMEKEELFETLAQALLASVDRDALSGWGGVVHIITKEGITSRELKGRQD 204          
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|290993280|ref|XP_002679261.1| (predicted protein [Naegleria gruberi] >gi|284092877|gb|EFC46517.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 301.982 bits (772), Expect = 1.020e-100
Identity = 131/204 (64.22%), Postives = 169/204 (82.84%), Query Frame = 0
Query:   77 SILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            SILEYNG  +VAM GKNCVAIA+D RYG++ QTV  +  K+ K+ D+LF+GL+GLATD+QT+ + L+FR+N+Y L+EERDIKP +F+ L+S+ILYEKRFGP+F+EP++AGL   +N PFI   DLIGAP F  +FVV+GTC+  LYG+CES +KPD+EPE LFEV+SQ LLA+VDRD +SGWGAVVHVITPD +T++ LK RQD
Sbjct:    2 SILEYNGAGIVAMTGKNCVAIAADTRYGIRQQTVGTDMQKIFKIHDKLFIGLNGLATDVQTVNEKLKFRMNMYNLKEERDIKPSSFANLMSNILYEKRFGPWFIEPVIAGLEGPENKPFICAQDLIGAPCFTDNFVVSGTCSEALYGMCESLYKPDMEPEDLFEVISQCLLAAVDRDCISGWGAVVHVITPDSITTKRLKVRQD 205          
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|1191055825|ref|XP_020905965.1| (proteasome subunit beta type-3-like [Exaiptasia pallida] >gi|999986576|gb|KXJ25711.1| Proteasome subunit beta type-3 [Exaiptasia pallida])

HSP 1 Score: 301.597 bits (771), Expect = 1.579e-100
Identity = 133/204 (65.20%), Postives = 174/204 (85.29%), Query Frame = 0
Query:   77 SILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            SI+EYNG A++AMVGKNCVAIA+D R G+QAQTV+C+F K+ +M ++LFVGL GLATD+QT+   L+FRLNLY+LRE R IKP+TF +++S++LYE+RFGPYFVEP+VAGL  + N P+IS +DLIG P+  KDFVV+GTC+  +YG+CES ++PDLEP+ LFE +SQ+L+ +VDRDA+SGWGAVVH+I PD VT+RTLKAR D
Sbjct:    2 SIMEYNGAAIIAMVGKNCVAIAADRRLGMQAQTVSCDFQKIFQMGEKLFVGLPGLATDVQTVANRLKFRLNLYELRENRSIKPKTFLSMVSNLLYERRFGPYFVEPVVAGLDPKTNEPYISALDLIGCPMETKDFVVSGTCSEQMYGMCESLWEPDLEPDDLFETISQALMNAVDRDAVSGWGAVVHIIEPDKVTTRTLKARMD 205          
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|47028283|gb|AAT09074.1| (proteasome beta subunit [Bigelowiella natans])

HSP 1 Score: 300.827 bits (769), Expect = 2.724e-100
Identity = 135/204 (66.18%), Postives = 175/204 (85.78%), Query Frame = 0
Query:   77 SILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            SIL+YNG A+VAMVGK+CVAIASD+RYG+Q QT+AC+  KV +M D+LF+GLSGL TD+QTL+Q   F+L +Y LRE R ++P+ FS+L+S  LYEKRFGPYFVEP+VAGL A++  PFI+ MDLIGAPVFAKDFVV+GT +  LYG+CE+F+KP++ P++LFE +SQSLLA+VDRD L+GWGA+VHVIT DGVT++ LK+R+D
Sbjct:    2 SILQYNGSAIVAMVGKDCVAIASDMRYGIQQQTIACDMKKVFQMGDKLFIGLSGLLTDVQTLKQKFDFKLKMYSLRENRPMRPKVFSSLVSSTLYEKRFGPYFVEPVVAGLDAKEG-PFIAAMDLIGAPVFAKDFVVSGTTSDELYGVCEAFWKPNMGPDELFETISQSLLAAVDRDCLAGWGAIVHVITKDGVTTKQLKSRKD 204          
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|1072224188|gb|OEU08940.1| (N-terminal nucleophile aminohydrolase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 299.671 bits (766), Expect = 7.221e-100
Identity = 135/204 (66.18%), Postives = 162/204 (79.41%), Query Frame = 0
Query:   77 SILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            SILEYNG A++AM GK CV IA+D R G Q  T+AC+F KV +MS +L+VGL GLATD+QTL QLL FRL LY+L+EER+I P+ FS LL  +LYEKRFGPYF+EP+VAGL  +   PF+SGMDLIGAPV  KDFVV GTC  N+YG+CE+ FKPD+ PE+LFE L Q+LL+SVDRDALSGWG VVH+IT D V +R LK R D
Sbjct:    2 SILEYNGAAIIAMAGKGCVGIAADRRLGAQLATIACDFTKVFRMSPKLYVGLGGLATDVQTLHQLLEFRLGLYRLKEEREITPKVFSHLLGQLLYEKRFGPYFIEPVVAGLDEKTGEPFLSGMDLIGAPVDTKDFVVTGTCTGNMYGMCEALFKPDMNPEELFETLGQALLSSVDRDALSGWGGVVHIITKDAVITRELKGRMD 205          
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|224014869|ref|XP_002297096.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968215|gb|EED86564.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 295.819 bits (756), Expect = 2.720e-98
Identity = 132/204 (64.71%), Postives = 172/204 (84.31%), Query Frame = 0
Query:   77 SILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            SILEYNG A++AM GK+CV IASD R G+  QTV+ +F K+ +M+++LFVGL+GLA+D+QTL+QLLRFR+NLY+LREER++ P+ F+ LLS++LYEKRFGPYF EP+VAGL  E++ P+++ MDLIGA    +DFVVAGTCA NLYG+CE+ +K D+E E+LFE L+Q+LLASVDRDALSGWG VVH+IT +G+ SR LK RQD
Sbjct:    2 SILEYNGAAIIAMSGKDCVGIASDNRMGISYQTVSMDFKKIFQMNEKLFVGLAGLASDVQTLDQLLRFRMNLYELREEREMTPKVFTNLLSNMLYEKRFGPYFAEPVVAGLD-ENDKPYLATMDLIGATSSTEDFVVAGTCAGNLYGMCETLYKKDMEQEELFETLAQALLASVDRDALSGWGGVVHIITKEGIISRELKGRQD 204          
BLAST of EWM23143.1 vs. NCBI_GenBank
Match: gi|301110580|ref|XP_002904370.1| (proteasome subunit beta type-3, putative [Phytophthora infestans T30-4] >gi|675200249|ref|XP_008909009.1| hypothetical protein PPTG_14216 [Phytophthora parasitica INRA-310] >gi|262096496|gb|EEY54548.1| proteasome subunit beta type-3, putative [Phytophthora infestans T30-4] >gi|566019262|gb|ETI42173.1| hypothetical protein F443_12663 [Phytophthora parasitica P1569] >gi|567956579|gb|ETK82199.1| hypothetical protein L915_12386 [Phytophthora parasitica] >gi|568014643|gb|ETL88820.1| hypothetical protein L917_12140 [Phytophthora parasitica] >gi|568044907|gb|ETM42081.1| hypothetical protein L914_12222 [Phytophthora parasitica] >gi|568090658|gb|ETN05487.1| hypothetical protein PPTG_14216 [Phytophthora parasitica INRA-310] >gi|570322844|gb|ETO70792.1| hypothetical protein F444_12772 [Phytophthora parasitica P1976] >gi|570946656|gb|ETP11913.1| hypothetical protein F441_12625 [Phytophthora parasitica CJ01A1] >gi|570978942|gb|ETP40027.1| hypothetical protein F442_12574 [Phytophthora parasitica P10297])

HSP 1 Score: 291.582 bits (745), Expect = 1.182e-96
Identity = 129/204 (63.24%), Postives = 169/204 (82.84%), Query Frame = 0
Query:   77 SILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 280
            SIL YNG A++AM GK+CV IA D R G+QAQTVA +F KV +++D+ F+GL+GLATD+Q++ QLL+F++N+YK+ EERDIKP+T SALLS+++YEKRFGP+FVEP++AGL  EDN PF+S MD +G  +  KDFVVAGT    LYG+CES +KPD+E E LFE LSQ LL++ +RDALSGWGAVVH+ITP G+TS+ L++RQD
Sbjct:    2 SILSYNGAAIIAMAGKDCVGIACDTRLGMQAQTVAMDFQKVFRVTDKTFLGLAGLATDVQSVSQLLKFKINMYKMNEERDIKPKTLSALLSNMMYEKRFGPWFVEPVIAGL-TEDNKPFLSSMDCLGCEMMTKDFVVAGTMEEALYGMCESMYKPDMEEEDLFETLSQCLLSACNRDALSGWGAVVHIITPKGITSKKLQSRQD 204          
The following BLAST results are available for this feature:
BLAST of EWM23143.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104024|gb|EWM23143.1|0.000e+0100.00Proteasome, beta-type subunit, conserved site [Nan... [more]
gi|298711226|emb|CBJ32446.1|9.115e-10771.08conserved unknown protein [Ectocarpus siliculosus][more]
gi|156389516|ref|XP_001635037.1|5.290e-10166.67predicted protein [Nematostella vectensis] >gi|156... [more]
gi|397628563|gb|EJK68962.1|6.021e-10167.65hypothetical protein THAOC_09830 [Thalassiosira oc... [more]
gi|290993280|ref|XP_002679261.1|1.020e-10064.22predicted protein [Naegleria gruberi] >gi|28409287... [more]
gi|1191055825|ref|XP_020905965.1|1.579e-10065.20proteasome subunit beta type-3-like [Exaiptasia pa... [more]
gi|47028283|gb|AAT09074.1|2.724e-10066.18proteasome beta subunit [Bigelowiella natans][more]
gi|1072224188|gb|OEU08940.1|7.221e-10066.18N-terminal nucleophile aminohydrolase [Fragilariop... [more]
gi|224014869|ref|XP_002297096.1|2.720e-9864.71predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|301110580|ref|XP_002904370.1|1.182e-9663.24proteasome subunit beta type-3, putative [Phytopht... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7537rna7537Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications