EWM23167.1, cds7513 (CDS) Nannochloropsis gaditana

Overview
NameEWM23167.1
Unique Namecds7513
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:173723..173784 -
Alignment locationCM002472.1:173108..173347 -
Alignment locationCM002472.1:172767..172946 -
Alignment locationCM002472.1:172571..172688 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23167.1
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100043g18.7250.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:173723..173784 -
CM002472.1supercontigCM002472.1:173108..173347 -
CM002472.1supercontigCM002472.1:172767..172946 -
CM002472.1supercontigCM002472.1:172571..172688 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
[Close]
BLAST of EWM23167.1 vs. NCBI_GenBank
Match: gi|585104048|gb|EWM23167.1| (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 412.535 bits (1059), Expect = 7.704e-146
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 
Query:    1 MPLQSVNYGRPPLPKYDDGSGEPRFARFGLTQRSLRLWAFLCGHFLTMASSARGAKHQHVLQMYRRLLGLARRLPESKQDEALFQIRQGFREHAEEADEASLGRDRLGRARGQPTSLTLSSPEVPILILIDVPTTHQWEEFEDWTRISFGASHASTMIIRIPSCQYEVAPFLNYGTTECLGCYEGTLIVRILAMLMKSY 199
            MPLQSVNYGRPPLPKYDDGSGEPRFARFGLTQRSLRLWAFLCGHFLTMASSARGAKHQHVLQMYRRLLGLARRLPESKQDEALFQIRQGFREHAEEADEASLGRDRLGRARGQPTSLTLSSPEVPILILIDVPTTHQWEEFEDWTRISFGASHASTMIIRIPSCQYEVAPFLNYGTTECLGCYEGTLIVRILAMLMKSY
Sbjct:    1 MPLQSVNYGRPPLPKYDDGSGEPRFARFGLTQRSLRLWAFLCGHFLTMASSARGAKHQHVLQMYRRLLGLARRLPESKQDEALFQIRQGFREHAEEADEASLGRDRLGRARGQPTSLTLSSPEVPILILIDVPTTHQWEEFEDWTRISFGASHASTMIIRIPSCQYEVAPFLNYGTTECLGCYEGTLIVRILAMLMKSY 199
The following BLAST results are available for this feature:
BLAST of EWM23167.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104048|gb|EWM23167.1|7.704e-146100.00Complex 1 LYR protein [Nannochloropsis gaditana][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7531rna7531Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications