EWM23165.1, cds7512 (CDS) Nannochloropsis gaditana

Overview
NameEWM23165.1
Unique Namecds7512
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:172243..172539 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23165.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100043g17.7248.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:172243..172539 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23165.1 vs. NCBI_GenBank
Match: gi|585104046|gb|EWM23165.1| (hypothetical protein Naga_100043g17 [Nannochloropsis gaditana])

HSP 1 Score: 203.371 bits (516), Expect = 1.993e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MEQASSSLGYLRMITPKRWKSLHTGDSDAMGGAKSAGRTYIVYKDGGGSVSREPLPREKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKGGIF 98
            MEQASSSLGYLRMITPKRWKSLHTGDSDAMGGAKSAGRTYIVYKDGGGSVSREPLPREKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKGGIF
Sbjct:    1 MEQASSSLGYLRMITPKRWKSLHTGDSDAMGGAKSAGRTYIVYKDGGGSVSREPLPREKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKGGIF 98          
BLAST of EWM23165.1 vs. NCBI_GenBank
Match: gi|1072227911|gb|OEU12649.1| (hypothetical protein FRACYDRAFT_270420 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 57.7658 bits (138), Expect = 3.317e-8
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 0
Query:   61 AYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKGGIF 98
              SNWDG ++DPD+V++H HQL+RMG+ +N+HAK GIF
Sbjct:  142 VISNWDGKNLDPDSVKQHNHQLKRMGYLNNSHAK-GIF 178          
BLAST of EWM23165.1 vs. NCBI_GenBank
Match: gi|1210515158|dbj|GAX25870.1| (hypothetical protein FisN_6Hh092 [Fistulifera solaris])

HSP 1 Score: 54.299 bits (129), Expect = 3.359e-7
Identity = 35/106 (33.02%), Postives = 53/106 (50.00%), Query Frame = 0
Query:    1 MEQASSSLGYLRMITPK---------RW--KSLHTGDSDAMGGAKSAGRTYIVYKDGGGSVSREPLPREKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKG 95
            +++A S L +LRM + K         RW  ++    ++DA G           ++D  G V R           NWDG ++DP++V+ H+ QLRR GF +N HAKG
Sbjct:   50 LKEAESRLSFLRMKSTKSQQRGTLAGRWVYRNGERLEADAEG----------TFRDSKGKVVR-----------NWDGKNLDPESVKMHRQQLRRAGFVNNAHAKG 134          
BLAST of EWM23165.1 vs. NCBI_GenBank
Match: gi|1210519791|dbj|GAX21343.1| (hypothetical protein FisN_6Lh092 [Fistulifera solaris])

HSP 1 Score: 54.299 bits (129), Expect = 4.247e-7
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = 0
Query:    1 MEQASSSLGYLRMITPK---------RW--KSLHTGDSDAMGGAKSAGRTYIVYKDGGGSVSREPLPREKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKG 95
            + +A S L +LRM + K         RW  ++    ++DA G           ++D  G V            SNWDG ++DP++V+ H+ QLRR GF +N HAKG
Sbjct:   50 LREAESRLSFLRMKSTKSQQRGTLAGRWVYRNGERLEADAEG----------TFRDSKGKV-----------VSNWDGKNLDPESVKMHRQQLRRAGFVNNAHAKG 134          
BLAST of EWM23165.1 vs. NCBI_GenBank
Match: gi|290985026|ref|XP_002675227.1| (predicted protein [Naegleria gruberi] >gi|284088822|gb|EFC42483.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 54.299 bits (129), Expect = 4.335e-7
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 0
Query:    1 MEQASSSLGYLRMITPKRWKSLHTGDSDAMGGAKSAGRTYIV-----YKDGGGSVSREPLPRE-KSAYSNWDGSSMDPDAVRRHQHQLRRMGFRD 89
            +++A    GYL MITPKR   LHT  S      +  G+T +V     +KD       + L +E K+ +SNW   ++DPD VR+H+  L+R  F D
Sbjct:   41 LKKAHDKFGYLCMITPKR---LHTETS------QIDGKTQLVKIDGEWKDVNAIGEDDNLTKEEKATWSNWGRGNLDPDQVRKHEQLLKRQHFMD 126          
The following BLAST results are available for this feature:
BLAST of EWM23165.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585104046|gb|EWM23165.1|1.993e-66100.00hypothetical protein Naga_100043g17 [Nannochlorops... [more]
gi|1072227911|gb|OEU12649.1|3.317e-860.53hypothetical protein FRACYDRAFT_270420 [Fragilario... [more]
gi|1210515158|dbj|GAX25870.1|3.359e-733.02hypothetical protein FisN_6Hh092 [Fistulifera sola... [more]
gi|1210519791|dbj|GAX21343.1|4.247e-733.02hypothetical protein FisN_6Lh092 [Fistulifera sola... [more]
gi|290985026|ref|XP_002675227.1|4.335e-736.84predicted protein [Naegleria gruberi] >gi|28408882... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7530rna7530Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications