EWM23185.1, cds7488 (CDS) Nannochloropsis gaditana

Overview
NameEWM23185.1
Unique Namecds7488
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:117003..117380 -
Alignment locationCM002472.1:116320..116817 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23185.1
Productlipolytic protein g-d-s-l family
Orig transcript idgnl|cribi|Naga_100343g2.7639.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:117003..117380 -
CM002472.1supercontigCM002472.1:116320..116817 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Homology
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|585104073|gb|EWM23185.1| (lipolytic protein g-d-s-l family [Nannochloropsis gaditana])

HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MPCINSGQCNDEAYTFYGMLKSCQGSSISDVIFESVSVGNLISSPPPFQRLVDIRIIHSASFFMLPFYARLQSHYAHTQSHLFLIMRFSTSIASVLFAAVPMAMARTVMIGDSMFAGGSKVNNWLQEWAGHEIENIAIVGASLHEGWTESIPAEYAELDKTVVPTTIIMDGGGNDVISKRSDCESMDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFYIGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRGWDGVHPTDEGYKMLAERIWEVKLENHVPI 291
            MPCINSGQCNDEAYTFYGMLKSCQGSSISDVIFESVSVGNLISSPPPFQRLVDIRIIHSASFFMLPFYARLQSHYAHTQSHLFLIMRFSTSIASVLFAAVPMAMARTVMIGDSMFAGGSKVNNWLQEWAGHEIENIAIVGASLHEGWTESIPAEYAELDKTVVPTTIIMDGGGNDVISKRSDCESMDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFYIGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRGWDGVHPTDEGYKMLAERIWEVKLENHVPI
Sbjct:    1 MPCINSGQCNDEAYTFYGMLKSCQGSSISDVIFESVSVGNLISSPPPFQRLVDIRIIHSASFFMLPFYARLQSHYAHTQSHLFLIMRFSTSIASVLFAAVPMAMARTVMIGDSMFAGGSKVNNWLQEWAGHEIENIAIVGASLHEGWTESIPAEYAELDKTVVPTTIIMDGGGNDVISKRSDCESMDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFYIGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRGWDGVHPTDEGYKMLAERIWEVKLENHVPI 291          
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|553183672|ref|XP_005853939.1| (lipolytic protein g-d-s-l family [Nannochloropsis gaditana CCMP526] >gi|422295117|gb|EKU22416.1| lipolytic protein g-d-s-l family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 229.565 bits (584), Expect = 4.907e-72
Identity = 112/206 (54.37%), Postives = 143/206 (69.42%), Query Frame = 0
Query:   88 FSTSIASVLFAAVPMAMARTVMIGDSMFAGGSKVNNWLQEWAGHE--IENIAIVGASLHEGWTESIPAEYAELDKTVVPTTIIMDGGGNDVISKRSDCESMDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFYIGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRGWDGVHPTDEGYKMLAERIWEVKLENHVPI 291
             S  +A+ LF    + + RTVMIGDSMF+  + V N L+ +AG    IEN+A+VGASLHEGW  SIPAEY+ + K   P TI+MDGGGNDVIS + DC S +D C+ QI EA  I +DLLE+MHED V HV+ MG +Y+  L KA D G + ++  C  A IDCH+AD RDL  P G DG+HP  EGY++LA RIWE+KL+N +PI
Sbjct:    1 MSRRLAATLFLLPALCLGRTVMIGDSMFSNNA-VKNALEYYAGGNVTIENMALVGASLHEGWVPSIPAEYSIMSKNPPPITIVMDGGGNDVISVKDDCLSFNDRCQQQIKEATDILADLLERMHEDKVQHVLLMGPYYLENLNKAVDEGFKLLSNVCKNATIDCHIADTRDLDPPLGDDGIHPIQEGYELLATRIWEIKLDNDIPI 205          
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|553182994|ref|XP_005853822.1| (hypothetical protein NGA_0470400 [Nannochloropsis gaditana CCMP526] >gi|422295241|gb|EKU22540.1| hypothetical protein NGA_0470400 [Nannochloropsis gaditana CCMP526] >gi|585112598|gb|EWM29990.1| hypothetical protein Naga_100276g6 [Nannochloropsis gaditana])

HSP 1 Score: 218.394 bits (555), Expect = 2.570e-67
Identity = 102/219 (46.58%), Postives = 145/219 (66.21%), Query Frame = 0
Query:   85 IMRFSTSIASVLFAAVPM---AMARTVMIGDSMFAGGSKV------NNWLQEWAGHEIENIAIVGASLHEGWTESIPAEYAELDKTV---VPTTIIMDGGGNDVISKRSDCESMDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFYIGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRGWDGVHPTDEGYKMLAERIWEVKLENHVPI 291
            +  F   +     + VP+    M+ TV++GDS+ AG   V      N +L +++G +++N A++G+SLH+GW +S+P  Y ++ K     VPTTI+++GGGNDVI+ R DC + +D CR QIDEA+ I   LL  MH+DGV HVI++GF+Y   + +A DYG E +   C  A IDCH+AD R+L IP GWDG+HP DEGYK L+ RIWEVK  N++PI
Sbjct:    5 LREFGLLVCMTAMSTVPVLSTGMSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVRDDCWAFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFNMTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTGWDGIHPLDEGYKRLSTRIWEVKEANNIPI 223          
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|585108483|gb|EWM26439.1| (hypothetical protein Naga_100344g3 [Nannochloropsis gaditana])

HSP 1 Score: 176.407 bits (446), Expect = 5.431e-52
Identity = 81/147 (55.10%), Postives = 103/147 (70.07%), Query Frame = 0
Query:  145 EGWTESIPAEYAELDKTVVPTTIIMDGGGNDVISKRSDCESMDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFYIGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRGWDGVHPTDEGYKMLAERIWEVKLENHVPI 291
            + W  SIPAEY+ + K   P TI+MDGGGNDVIS + DC S +D C+ QI EA  I +DLLE+MHED V HV+ MG +Y+  L KA D G + ++  C  A IDCH+AD RDL  P G DG+HP  EGY++LA RIWE+KL+N +PI
Sbjct:    4 QRWVPSIPAEYSIMSKNPPPITIVMDGGGNDVISVKDDCLSFNDRCQQQIKEATDILADLLERMHEDKVQHVLLMGPYYLENLNKAVDEGFKLLSNVCKNATIDCHIADTRDLDPPLGDDGIHPIQEGYELLATRIWEIKLDNDIPI 150          
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|1182764890|emb|SMF04632.1| (Lysophospholipase L1 [Pseudobacteriovorax antillogorgiicola])

HSP 1 Score: 115.546 bits (288), Expect = 1.904e-27
Identity = 58/187 (31.02%), Postives = 101/187 (54.01%), Query Frame = 0
Query:  104 MARTVMIGDSMFAGGSKVNNWLQEWAGHEIENIAIVGASLHEGWTESIPAEYAELDKTVVPTTIIMDGGGNDVISKRSDCESMDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFYI----GGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRG---WDGVHPTDEGYKMLAERIWEV 283
            +  T+++GDS+FA   ++   L+  +G  I + A  GA +     + +  +Y       +P T+IM+GGGNDV+   + C  ++  C   I+ A+  G DL++ M +DGV  ++++G++Y     GGL+ A DY   ++ + C    + C + + R L    G    DG+HPT  G + +A+ IWEV
Sbjct:   40 LGDTIILGDSIFALNGEIERRLERNSGQRITSYARNGAEM-----DDVVQQYYRARARGIPQTVIMNGGGNDVLGNITSCRFLNSRCVNAIEGAIDQGVDLIQLMEDDGVERIVYLGYYYTKFIGGGLDNAIDYAMARIPQICGATNLPCDVVETRRLMNGFGNRIIDGIHPTFRGSRKMADAIWEV 221          
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|521076579|ref|WP_020407486.1| (SGNH/GDSL hydrolase family protein [Hahella ganghwensis])

HSP 1 Score: 104.76 bits (260), Expect = 4.887e-23
Identity = 67/201 (33.33%), Postives = 107/201 (53.23%), Query Frame = 0
Query:  106 RTVMIGDSMFAGGSKVNNWLQEWAGHEIENIAIVGASLHEG-WTESIPAEY--AELDKTVVPTTIIMDGGGNDVISKR-----SDCES-------MDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGF-------FYIGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRG---WDGVHPTDEGYKMLAERIW 281
            + V IGDS+FA    + ++L+++AG       + GA L  G    SI  +Y  A  D + + T I+MDGGGND++         DC++       +   C+  I++    G +LL  MH DGV++VI++G+       F +  +E+A DYG  K+A+AC+ + ++C   D R   I  G   +DG+HP   G K LA+ +W
Sbjct:   55 QVVTIGDSIFALSGDLQDFLEDYAGETFRRYTLSGAELTGGVIATSIADQYEIARSDNSDIET-IVMDGGGNDILIPAIMLDPYDCKTQWYEFGKLSSTCKNYINDIYIDGVNLLNDMHADGVSNVIYLGYYHTKNGLFLLDSMEEAVDYGDAKLAQACSYSAVNCEFVDPRS-SINDGDIIFDGIHPNTGGSKKLADLVW 253          
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|1097643629|emb|SFM36860.1| (GDSL-like Lipase/Acylhydrolase [Marinobacter zhejiangensis])

HSP 1 Score: 103.219 bits (256), Expect = 1.695e-22
Identity = 63/201 (31.34%), Postives = 105/201 (52.24%), Query Frame = 0
Query:  106 RTVMIGDSMFAGGSKVNNWLQEWAGHEIENIAIVGASLHEGWTESIPAEYAELDKTVVPT--TIIMDGGGNDVISKR-----SDCES-------MDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFY-------IGGLEKAADYGTEKVAEACATAKIDCHLADLR----DLQIPRGWDGVHPTDEGYKMLAERIW 281
            + V IGDS+FA   ++ ++L++ AG       + GA L  G   +   +  ++ ++  P   TI+MDGGGND++         DC++       +  +C+  I++    G +LL  MH DGV +VI++G++Y       +  +E+A DYG  ++A+AC  + ++C   D R    D  I    DG+HPT  G + LA  IW
Sbjct:   55 QVVTIGDSIFALSGELQDFLEQDAGQTFRRYTLSGAELAGGAVATSIVDQYQIARSDNPAIDTIVMDGGGNDILIPAIMFDPYDCKTQWYEFGQLSSSCKNLINDIYVDGVNLLNDMHADGVDNVIYLGYYYTKNGLFLLDSMEEAVDYGDYRLAQACRYSAVNCQFVDPRSAINDSDIIA--DGIHPTTTGSRKLASLIW 253          
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|1088945591|emb|SDW35142.1| (GDSL-like Lipase/Acylhydrolase [Marinobacter mobilis])

HSP 1 Score: 101.293 bits (251), Expect = 7.164e-22
Identity = 61/200 (30.50%), Postives = 104/200 (52.00%), Query Frame = 0
Query:  106 RTVMIGDSMFAGGSKVNNWLQEWAGHEIENIAIVGASLHEGWTESIPAEYAELDKTVVPT--TIIMDGGGNDVISKR-----SDCES-------MDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFY-------IGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRG---WDGVHPTDEGYKMLAERIW 281
            + + IGDS+FA   ++ ++L++ AG       + GA L  G   +   +  ++ ++  P   T++MDGGGND++         DC++       +  +C+  I++    G +LL  MH DGV HVI++G++Y       +  +E+A DYG  ++A+AC  + ++C   D R   I  G    DG+HP   G + LA  IW
Sbjct:   42 QVITIGDSIFALSGELQDFLEQDAGQTFRRYTLSGAELAGGAVATSIVDQYQIARSDNPAIDTVVMDGGGNDILIPAIMFDPYDCKTQWYEFGQLSRSCKDLINDIYVDGVNLLNDMHADGVDHVIYLGYYYTKNGLFLLDSMEEAVDYGDTRLAQACQYSAVNCQFIDPRS-AINDGDIIADGIHPNTTGSRKLANLIW 240          
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|1149199120|ref|WP_077751379.1| (hypothetical protein [Shewanella psychrophila] >gi|1148951612|gb|AQS36039.1| hypothetical protein Sps_00847 [Shewanella psychrophila])

HSP 1 Score: 91.2781 bits (225), Expect = 4.084e-18
Identity = 56/194 (28.87%), Postives = 100/194 (51.55%), Query Frame = 0
Query:  108 VMIGDSMFAGGSKVNNWLQEWAGHEIENIAIVGASLHEG-WTESIPAEYAEL--DKTVVPTTIIMDGGGNDVISKRS-----DCES------MDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFYIGG----LEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRGW--DGVHPTDEGYKMLAERIW 281
            + +GDS++    ++  +L++ AG    +    GA L  G    S+  +YA+   D + + T I+M+GGGND++          C++      + ++C   ID+       LL QM  + V++V+++G+++  G    L KA DYG  +++EAC+   +DC   D R + +P     D +HPT  G + +A  IW
Sbjct:   47 ITLGDSIYDLSGEIQLFLEQDAGETFRDYTQSGAELAGGSLATSVITQYADAKSDNSTIET-IVMNGGGNDILIPAMLFDPYRCKTKWYRPNLTNSCISLIDDVYVDAVTLLNQMETESVSNVLYLGYYHTTGNLTSLIKAVDYGNTRLSEACSNTTVDCSFIDPRSVIVPSDVISDNIHPTTSGSQKMAALIW 239          
BLAST of EWM23185.1 vs. NCBI_GenBank
Match: gi|500110461|ref|WP_011786466.1| (MULTISPECIES: hypothetical protein [Marinobacter] >gi|120325783|gb|ABM20098.1| hypothetical protein Maqu_3024 [Marinobacter hydrocarbonoclasticus VT8] >gi|550675599|gb|ERS00421.1| hypothetical protein Q673_09035 [Marinobacter sp. EN3] >gi|550787968|gb|ERS85775.1| hypothetical protein Q672_15640 [Marinobacter sp. EVN1])

HSP 1 Score: 91.2781 bits (225), Expect = 4.378e-18
Identity = 62/199 (31.16%), Postives = 97/199 (48.74%), Query Frame = 0
Query:  106 RTVMIGDSMFAGGSKVNNWLQEWAGHEIENIAIVGASLH-EGWTESIPAEYAE-LDKTVVPTTIIMDGGGNDVI-----SKRSDCES-------MDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFY-------IGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRG--WDGVHPTDEGYKMLAERIW 281
            + V +GDS+FA   ++ N L+  AG       + GA L  E    SIP ++ E +       TI+ D GGND++        ++C++       +   CR  ID+    G D L +M E GV   I  G++Y       +  +++A DYG   +A+AC  + +DC   D R +   R   +DG+HP D G K +A+ IW
Sbjct:   52 QVVFVGDSIFALSGEIQNQLEAKAGETFRRYTVSGAELSGELIAPSIPNQFREAVTDNPDIKTIVGDAGGNDILIPAIAFNSNNCKTPWWRFGRLSQQCRDFIDDIYVEGVDFLNEMAEAGVQKGILTGYYYTKNGLFRLDDMKEAVDYGNATLAKACENSVLDCTFVDPRWVINDRDIIFDGIHPADSGSKKIADLIW 250          
The following BLAST results are available for this feature:
BLAST of EWM23185.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104073|gb|EWM23185.1|0.000e+0100.00lipolytic protein g-d-s-l family [Nannochloropsis ... [more]
gi|553183672|ref|XP_005853939.1|4.907e-7254.37lipolytic protein g-d-s-l family [Nannochloropsis ... [more]
gi|553182994|ref|XP_005853822.1|2.570e-6746.58hypothetical protein NGA_0470400 [Nannochloropsis ... [more]
gi|585108483|gb|EWM26439.1|5.431e-5255.10hypothetical protein Naga_100344g3 [Nannochloropsi... [more]
gi|1182764890|emb|SMF04632.1|1.904e-2731.02Lysophospholipase L1 [Pseudobacteriovorax antillog... [more]
gi|521076579|ref|WP_020407486.1|4.887e-2333.33SGNH/GDSL hydrolase family protein [Hahella ganghw... [more]
gi|1097643629|emb|SFM36860.1|1.695e-2231.34GDSL-like Lipase/Acylhydrolase [Marinobacter zheji... [more]
gi|1088945591|emb|SDW35142.1|7.164e-2230.50GDSL-like Lipase/Acylhydrolase [Marinobacter mobil... [more]
gi|1149199120|ref|WP_077751379.1|4.084e-1828.87hypothetical protein [Shewanella psychrophila] >gi... [more]
gi|500110461|ref|WP_011786466.1|4.378e-1831.16MULTISPECIES: hypothetical protein [Marinobacter] ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7506rna7506Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications