EWM23199.1, cds7473 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|585104097|gb|EWM23199.1| (ras-related protein rab-2b, partial [Nannochloropsis gaditana]) HSP 1 Score: 362.459 bits (929), Expect = 6.902e-127 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MSWCCQASRRGLDIDEYTTFFFSLRFLPFSVQSVPVPNMSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRNTPTAAGIQVSPSIIP 174
MSWCCQASRRGLDIDEYTTFFFSLRFLPFSVQSVPVPNMSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRNTPTAAGIQVSPSIIP
Sbjct: 1 MSWCCQASRRGLDIDEYTTFFFSLRFLPFSVQSVPVPNMSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRNTPTAAGIQVSPSIIP 174
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|1044390076|ref|XP_017399982.1| (PREDICTED: ras-related protein Rab-2B [Cebus capucinus imitator]) HSP 1 Score: 207.223 bits (526), Expect = 3.146e-66 Identity = 98/120 (81.67%), Postives = 108/120 (90.00%), Query Frame = 0
Query: 39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPR 158
M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL WLE+A+ +SS NMVI I +
Sbjct: 1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 120
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|1211443857|ref|XP_021507977.1| (ras-related protein Rab-2B isoform X3 [Meriones unguiculatus]) HSP 1 Score: 209.534 bits (532), Expect = 4.362e-66 Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0
Query: 39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL WLE+A+ +SS NMVI I ++
Sbjct: 1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|942172280|ref|XP_006001305.2| (PREDICTED: ras-related protein Rab-2B, partial [Latimeria chalumnae]) HSP 1 Score: 209.149 bits (531), Expect = 4.623e-66 Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 0
Query: 39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
MSYAYLFK I+IGD+GVGKSCLLLQFTD+RF VHDLTIGVEFGAR++ IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL WLE+A+ +SS NM+I I ++
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMIIMLIGNKS 121
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|545373929|ref|XP_005651281.1| (small rab-related GTPase [Coccomyxa subellipsoidea C-169] >gi|384253262|gb|EIE26737.1| small rab-related GTPase [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 209.92 bits (533), Expect = 4.864e-66 Identity = 98/124 (79.03%), Postives = 111/124 (89.52%), Query Frame = 0
Query: 39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRNTPT 162
MSYAYLFK I+IGD+GVGKSCLLLQFTD+RF VHDLTIGVEFGAR+++IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA WLE+A+ +++PNM I I ++ T
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKSDLT 124
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|685552951|ref|XP_009209389.1| (PREDICTED: ras-related protein Rab-2B isoform X2 [Papio anubis]) HSP 1 Score: 209.534 bits (532), Expect = 5.013e-66 Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0
Query: 39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL WLE+A+ +SS NMVI I ++
Sbjct: 1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|1040194548|ref|XP_017203676.1| (PREDICTED: ras-related protein Rab-2B isoform X2 [Oryctolagus cuniculus]) HSP 1 Score: 209.149 bits (531), Expect = 5.864e-66 Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0
Query: 39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL WLE+A+ +SS NMVI I ++
Sbjct: 1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|584055688|ref|XP_006772420.1| (PREDICTED: ras-related protein Rab-2B [Myotis davidii]) HSP 1 Score: 208.764 bits (530), Expect = 6.478e-66 Identity = 98/120 (81.67%), Postives = 108/120 (90.00%), Query Frame = 0
Query: 39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPR 158
M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL WLE+A+ +SS NMVI I +
Sbjct: 1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 120
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|57997511|emb|CAI46103.1| (hypothetical protein [Homo sapiens]) HSP 1 Score: 209.534 bits (532), Expect = 6.697e-66 Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0
Query: 39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL WLE+A+ +SS NMVI I ++
Sbjct: 1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|611969151|ref|XP_007479844.1| (PREDICTED: ras-related protein Rab-2B isoform X2 [Monodelphis domestica]) HSP 1 Score: 208.764 bits (530), Expect = 7.603e-66 Identity = 98/117 (83.76%), Postives = 107/117 (91.45%), Query Frame = 0
Query: 39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAI 155
M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL WLE+A+ +SS NMVI I
Sbjct: 1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 117 The following BLAST results are available for this feature:
BLAST of EWM23199.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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