EWM23199.1, cds7473 (CDS) Nannochloropsis gaditana

Overview
NameEWM23199.1
Unique Namecds7473
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:85336..85495 -
Alignment locationCM002472.1:85105..85176 -
Alignment locationCM002472.1:84863..84977 -
Alignment locationCM002472.1:84500..84675 -

Link to JBrowse

Properties
Property NameValue
Start range84500
Start range.
Protein idEWM23199.1
Productras-related protein rab-2b
Partialtrue
Orig transcript idgnl|cribi|Naga_100808g1.4375.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:85336..85495 -
CM002472.1supercontigCM002472.1:85105..85176 -
CM002472.1supercontigCM002472.1:84863..84977 -
CM002472.1supercontigCM002472.1:84500..84675 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0007165signal transduction
GO:0015031protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR003578Small_GTPase_Rho
IPR003579Small_GTPase_Rab_type
IPR001806Small_GTPase
Homology
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|585104097|gb|EWM23199.1| (ras-related protein rab-2b, partial [Nannochloropsis gaditana])

HSP 1 Score: 362.459 bits (929), Expect = 6.902e-127
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MSWCCQASRRGLDIDEYTTFFFSLRFLPFSVQSVPVPNMSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRNTPTAAGIQVSPSIIP 174
            MSWCCQASRRGLDIDEYTTFFFSLRFLPFSVQSVPVPNMSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRNTPTAAGIQVSPSIIP
Sbjct:    1 MSWCCQASRRGLDIDEYTTFFFSLRFLPFSVQSVPVPNMSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRNTPTAAGIQVSPSIIP 174          
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|1044390076|ref|XP_017399982.1| (PREDICTED: ras-related protein Rab-2B [Cebus capucinus imitator])

HSP 1 Score: 207.223 bits (526), Expect = 3.146e-66
Identity = 98/120 (81.67%), Postives = 108/120 (90.00%), Query Frame = 0
Query:   39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPR 158
            M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF  VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL  WLE+A+ +SS NMVI  I  +
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 120          
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|1211443857|ref|XP_021507977.1| (ras-related protein Rab-2B isoform X3 [Meriones unguiculatus])

HSP 1 Score: 209.534 bits (532), Expect = 4.362e-66
Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0
Query:   39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
            M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF  VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL  WLE+A+ +SS NMVI  I  ++
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121          
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|942172280|ref|XP_006001305.2| (PREDICTED: ras-related protein Rab-2B, partial [Latimeria chalumnae])

HSP 1 Score: 209.149 bits (531), Expect = 4.623e-66
Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 0
Query:   39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
            MSYAYLFK I+IGD+GVGKSCLLLQFTD+RF  VHDLTIGVEFGAR++ IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL  WLE+A+ +SS NM+I  I  ++
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMIIMLIGNKS 121          
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|545373929|ref|XP_005651281.1| (small rab-related GTPase [Coccomyxa subellipsoidea C-169] >gi|384253262|gb|EIE26737.1| small rab-related GTPase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 209.92 bits (533), Expect = 4.864e-66
Identity = 98/124 (79.03%), Postives = 111/124 (89.52%), Query Frame = 0
Query:   39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRNTPT 162
            MSYAYLFK I+IGD+GVGKSCLLLQFTD+RF  VHDLTIGVEFGAR+++IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA WLE+A+ +++PNM I  I  ++  T
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKSDLT 124          
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|685552951|ref|XP_009209389.1| (PREDICTED: ras-related protein Rab-2B isoform X2 [Papio anubis])

HSP 1 Score: 209.534 bits (532), Expect = 5.013e-66
Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0
Query:   39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
            M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF  VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL  WLE+A+ +SS NMVI  I  ++
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121          
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|1040194548|ref|XP_017203676.1| (PREDICTED: ras-related protein Rab-2B isoform X2 [Oryctolagus cuniculus])

HSP 1 Score: 209.149 bits (531), Expect = 5.864e-66
Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0
Query:   39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
            M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF  VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL  WLE+A+ +SS NMVI  I  ++
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121          
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|584055688|ref|XP_006772420.1| (PREDICTED: ras-related protein Rab-2B [Myotis davidii])

HSP 1 Score: 208.764 bits (530), Expect = 6.478e-66
Identity = 98/120 (81.67%), Postives = 108/120 (90.00%), Query Frame = 0
Query:   39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPR 158
            M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF  VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL  WLE+A+ +SS NMVI  I  +
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 120          
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|57997511|emb|CAI46103.1| (hypothetical protein [Homo sapiens])

HSP 1 Score: 209.534 bits (532), Expect = 6.697e-66
Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0
Query:   39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAIQPRN 159
            M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF  VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL  WLE+A+ +SS NMVI  I  ++
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121          
BLAST of EWM23199.1 vs. NCBI_GenBank
Match: gi|611969151|ref|XP_007479844.1| (PREDICTED: ras-related protein Rab-2B isoform X2 [Monodelphis domestica])

HSP 1 Score: 208.764 bits (530), Expect = 7.603e-66
Identity = 98/117 (83.76%), Postives = 107/117 (91.45%), Query Frame = 0
Query:   39 MSYAYLFKSIVIGDSGVGKSCLLLQFTDRRFVQVHDLTIGVEFGARLVHIDGKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLARWLEEAKLYSSPNMVIYAI 155
            M+YAYLFK I+IGD+GVGKSCLLLQFTD+RF  VHDLTIGVEFGAR+V+IDGK IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL  WLE+A+ +SS NMVI  I
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 117          
The following BLAST results are available for this feature:
BLAST of EWM23199.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104097|gb|EWM23199.1|6.902e-127100.00ras-related protein rab-2b, partial [Nannochlorops... [more]
gi|1044390076|ref|XP_017399982.1|3.146e-6681.67PREDICTED: ras-related protein Rab-2B [Cebus capuc... [more]
gi|1211443857|ref|XP_021507977.1|4.362e-6680.99ras-related protein Rab-2B isoform X3 [Meriones un... [more]
gi|942172280|ref|XP_006001305.2|4.623e-6680.17PREDICTED: ras-related protein Rab-2B, partial [La... [more]
gi|545373929|ref|XP_005651281.1|4.864e-6679.03small rab-related GTPase [Coccomyxa subellipsoidea... [more]
gi|685552951|ref|XP_009209389.1|5.013e-6680.99PREDICTED: ras-related protein Rab-2B isoform X2 [... [more]
gi|1040194548|ref|XP_017203676.1|5.864e-6680.99PREDICTED: ras-related protein Rab-2B isoform X2 [... [more]
gi|584055688|ref|XP_006772420.1|6.478e-6681.67PREDICTED: ras-related protein Rab-2B [Myotis davi... [more]
gi|57997511|emb|CAI46103.1|6.697e-6680.99hypothetical protein [Homo sapiens][more]
gi|611969151|ref|XP_007479844.1|7.603e-6683.76PREDICTED: ras-related protein Rab-2B isoform X2 [... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7491rna7491Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications