EWM23213.1, cds7460 (CDS) Nannochloropsis gaditana

Overview
NameEWM23213.1
Unique Namecds7460
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:47349..47777 +
Alignment locationCM002472.1:47989..48079 +
Alignment locationCM002472.1:48335..48391 +

Link to JBrowse

Properties
Property NameValue
End range.
End range48391
Protein idEWM23213.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101006g3.4581.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:47349..47777 +
CM002472.1supercontigCM002472.1:47989..48079 +
CM002472.1supercontigCM002472.1:48335..48391 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23213.1 vs. NCBI_GenBank
Match: gi|585104138|gb|EWM23213.1| (hypothetical protein Naga_101006g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 385.956 bits (990), Expect = 1.405e-135
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 
Query:    1 MPLSPSLATGSALSLSFFPLGCGLPSFPGLVPRQDSRMTSYFKQPALGAQRSTWMAEEEGGKEGECAVRDGKGGGEVVEVDVEEAGSPLMGGEGQGEGGKKRRMKVEKENDGCVQKEKREGGEVNGLGAAFQRHTSAFHEVSQEEGAEIYTKLIGWYIDHRRKLPWRGDPPPYDTEERKREGRRAGREGGRE 192
            MPLSPSLATGSALSLSFFPLGCGLPSFPGLVPRQDSRMTSYFKQPALGAQRSTWMAEEEGGKEGECAVRDGKGGGEVVEVDVEEAGSPLMGGEGQGEGGKKRRMKVEKENDGCVQKEKREGGEVNGLGAAFQRHTSAFHEVSQEEGAEIYTKLIGWYIDHRRKLPWRGDPPPYDTEERKREGRRAGREGGRE
Sbjct:    1 MPLSPSLATGSALSLSFFPLGCGLPSFPGLVPRQDSRMTSYFKQPALGAQRSTWMAEEEGGKEGECAVRDGKGGGEVVEVDVEEAGSPLMGGEGQGEGGKKRRMKVEKENDGCVQKEKREGGEVNGLGAAFQRHTSAFHEVSQEEGAEIYTKLIGWYIDHRRKLPWRGDPPPYDTEERKREGRRAGREGGRE 192
The following BLAST results are available for this feature:
BLAST of EWM23213.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104138|gb|EWM23213.1|1.405e-135100.00hypothetical protein Naga_101006g3, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7478rna7478Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications