EWM23216.1, cds7457 (CDS) Nannochloropsis gaditana

Overview
NameEWM23216.1
Unique Namecds7457
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:43169..43387 +
Alignment locationCM002472.1:43605..43844 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23216.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102281g1.9481.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:43169..43387 +
CM002472.1supercontigCM002472.1:43605..43844 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23216.1 vs. NCBI_GenBank
Match: gi|585104143|gb|EWM23216.1| (hypothetical protein Naga_102281g1 [Nannochloropsis gaditana])

HSP 1 Score: 303.138 bits (775), Expect = 4.225e-104
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query:    1 MRPSLPPSPPASLPPSLQGYPNELALCPDKFNCPRRMNAVIIMRFYTSDPDLPEANSKTDPLSANNPRLFGYEAPPTVEKRANNKWRERWKLIDTCDQSRPTRFTNVCCPSLPPSLSPPSRSKKPHICLPASQPVCKLPSRIAPVQALFHPP 152
            MRPSLPPSPPASLPPSLQGYPNELALCPDKFNCPRRMNAVIIMRFYTSDPDLPEANSKTDPLSANNPRLFGYEAPPTVEKRANNKWRERWKLIDTCDQSRPTRFTNVCCPSLPPSLSPPSRSKKPHICLPASQPVCKLPSRIAPVQALFHPP
Sbjct:    1 MRPSLPPSPPASLPPSLQGYPNELALCPDKFNCPRRMNAVIIMRFYTSDPDLPEANSKTDPLSANNPRLFGYEAPPTVEKRANNKWRERWKLIDTCDQSRPTRFTNVCCPSLPPSLSPPSRSKKPHICLPASQPVCKLPSRIAPVQALFHPP 152          
BLAST of EWM23216.1 vs. NCBI_GenBank
Match: gi|553192721|ref|XP_005855631.1| (hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526] >gi|422293420|gb|EKU20720.1| hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.1301 bits (235), Expect = 5.524e-20
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 0
Query:   14 PPSLQGYPNELALCPDKF---NCPRRMNAVIIMRFYTSDPDLPEANSKTD-PLSANNPRLFGYEAPPTVEKRANNKW-----RERWKLIDTCDQSRPTRFTNVCCP---SLPPSLSPPSRSKK 124
            P   QG  NEL+LCP+      C R +NAV++MRFYTSDPD P  +SKTD P S  N RLFGY  PP VE+R    W     R+RW++  TCDQ+R T+ T++       + P  +PP R  K
Sbjct:  234 PRGDQGLKNELSLCPESMTDRQC-RSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNK 355          
BLAST of EWM23216.1 vs. NCBI_GenBank
Match: gi|585112738|gb|EWM30096.1| (hypothetical protein Naga_100193g4 [Nannochloropsis gaditana])

HSP 1 Score: 94.7449 bits (234), Expect = 6.010e-20
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 0
Query:   14 PPSLQGYPNELALCPDKF---NCPRRMNAVIIMRFYTSDPDLPEANSKTD-PLSANNPRLFGYEAPPTVEKRANNKW-----RERWKLIDTCDQSRPTRFTNVCCP---SLPPSLSPPSRSKK 124
            P   QG  NEL+LCP+      C R +NAV++MRFYTSDPD P  +SKTD P S  N RLFGY  PP VE+R    W     R+RW++  TCDQ+R T+ T++       + P  +PP R  K
Sbjct:   74 PRGDQGLKNELSLCPESMTDRQC-RSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNK 195          
The following BLAST results are available for this feature:
BLAST of EWM23216.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104143|gb|EWM23216.1|4.225e-104100.00hypothetical protein Naga_102281g1 [Nannochloropsi... [more]
gi|553192721|ref|XP_005855631.1|5.524e-2046.34hypothetical protein NGA_0673800 [Nannochloropsis ... [more]
gi|585112738|gb|EWM30096.1|6.010e-2046.34hypothetical protein Naga_100193g4 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7475rna7475Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications