EWM29920.1, cds745 (CDS) Nannochloropsis gaditana

Overview
NameEWM29920.1
Unique Namecds745
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:318193..318804 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29920.1
Producttf1-like protein
Orig transcript idgnl|cribi|Naga_100035g2.3384.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:318193..318804 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008914PtdEtn-bd_prot_PEBP
Homology
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|585112503|gb|EWM29920.1| (tf1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 414.461 bits (1064), Expect = 1.391e-146
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
Query:    1 MIRSSPPFLLTFAFLSVASILQPPHRFGAVAQMTKHHAANLRDAGVIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDVVGATFFKAAHQSK 203
            MIRSSPPFLLTFAFLSVASILQPPHRFGAVAQMTKHHAANLRDAGVIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDVVGATFFKAAHQSK
Sbjct:    1 MIRSSPPFLLTFAFLSVASILQPPHRFGAVAQMTKHHAANLRDAGVIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDVVGATFFKAAHQSK 203          
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|168033265|ref|XP_001769136.1| (predicted protein [Physcomitrella patens] >gi|162679562|gb|EDQ66008.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 136.732 bits (343), Expect = 2.366e-37
Identity = 69/158 (43.67%), Postives = 93/158 (58.86%), Query Frame = 0
Query:   46 VIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQ-PGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAHQ 201
            VI DVID F P V + + Y S  ++ G  + P      P V + G+    + +TL M+DPDAPSP  PS RE++HWIV++IPG ++    G EVVPY  P PP G HRY+  + +QP   P+ V  P+ R  F TRTF  E G+   V AT+F AA +
Sbjct:   13 VIGDVIDMFAPSVDMAVVYTSRKVSNGCQMKPSATNEAPTVHVTGNNGDNNFFTLIMTDPDAPSPSEPSLREWVHWIVTDIPGNSSTTTSGKEVVPYVGPCPPIGIHRYIFVLFKQPTGKPLLVTAPSVRNNFNTRTFAVEHGLGFPVAATYFNAAKE 170          
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|1047209949|dbj|BAV32137.1| (MOTHER OF FT AND TFL1 [Symplocarpus renifolius])

HSP 1 Score: 137.502 bits (345), Expect = 3.127e-37
Identity = 84/196 (42.86%), Postives = 107/196 (54.59%), Query Frame = 0
Query:    9 LLTFAFLSVASILQPPHRFGAVAQMTKHHAANLRDAGVIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEG--SQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAHQ 201
            +L  AF S+ S+L P      VA   +     L  A VIPDVID F P  ++   Y    +  G  I P +    P V + G      +LYTL M+DPDAPSP +PS RE+LHWIV +IPG  N  A+G E+VPY  P PP G HRYV  V +Q  T    VRPP  RG F+TR F  + G+ + V A +F A  +
Sbjct:   20 VLVSAFASL-SLLLP------VATSRRSQLDALVAARVIPDVIDAFSPAAEVSARYGRRDVVDGCDIKPSESASRPAVWIRGRGCSGDNLYTLIMTDPDAPSPSNPSEREWLHWIVVDIPGECN-AAKGKELVPYMGPEPPIGIHRYVFVVFKQNKTL-GEVRPPLGRGHFKTRGFAAQNGLGLPVAALYFNATKE 206          
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|1137184742|gb|OMO59963.1| (Phosphatidylethanolamine-binding protein PEBP [Corchorus capsularis])

HSP 1 Score: 135.961 bits (341), Expect = 4.154e-37
Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = 0
Query:   46 VIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAHQ 201
            VI DV+D F P V + I Y S  +T G  + P   ++ P+V+++G  P HLYTL M+DPDAPSP  PS RE++HWIV +IPGG N   +G E++PY  P PP G HRY+  + +Q G     V+PPA R  F TR F     + + V   +F A  +
Sbjct:   13 VIGDVVDMFVPSVTMSIYYASKHVTNGCDVKPSMAINPPKVSIDG-HPDHLYTLVMTDPDAPSPSEPSMREWVHWIVCDIPGGTNP-TQGKEILPYMGPRPPVGIHRYIFVLFQQNGPMGTAVQPPASRANFNTRLFADHLNLGLPVATVYFNAQKE 167          
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|1137231847|gb|OMO94933.1| (Phosphatidylethanolamine-binding protein PEBP [Corchorus olitorius])

HSP 1 Score: 135.576 bits (340), Expect = 6.070e-37
Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = 0
Query:   46 VIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAHQ 201
            VI DV+D F P V + I Y S  +T G  + P   ++ P+V+++G  P HLYTL M+DPDAPSP  PS RE++HWIV +IPGG N   +G E++PY  P PP G HRY+  + +Q G     V+PPA R  F TR F     + + V   +F A  +
Sbjct:   13 VIGDVVDMFVPTVTMSIYYASKHVTNGCDVKPSMAINPPKVSIDG-HPDHLYTLVMTDPDAPSPSEPSMREWVHWIVCDIPGGTNP-TQGKEILPYMGPRPPVGIHRYIFVLFQQNGPMGTAVQPPASRANFNTRLFADHLNLGLPVATVYFNAQKE 167          
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|1026027511|ref|XP_016560013.1| (PREDICTED: protein MOTHER of FT and TFL1-like [Capsicum annuum])

HSP 1 Score: 134.42 bits (337), Expect = 2.768e-36
Identity = 70/158 (44.30%), Postives = 95/158 (60.13%), Query Frame = 0
Query:   46 VIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGS-QPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAHQ 201
            VI DVID F P V+  + YDS  I+ G  I P    H P + ++GS    +LYTL M+DPDAPSP  P+ RE+LHWIV+++P G  D +EG EVV Y  P PP G HRYV T+  Q  +  +  +PP  R  F+TR F  + G+ + V A +F +  +
Sbjct:   19 VIGDVIDLFVPAVEFTVEYDSKQISNGVEITPAAAAHKPTLHIKGSPDSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDVPEGG-DASEGREVVEYMGPKPPAGIHRYVFTLFRQTESQQVPHKPPEVRSNFKTRQFATDNGLGLPVAALYFNSQKE 175          
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|720041365|ref|XP_010268882.1| (PREDICTED: protein MOTHER of FT and TFL1-like [Nelumbo nucifera])

HSP 1 Score: 132.88 bits (333), Expect = 7.775e-36
Identity = 69/158 (43.67%), Postives = 92/158 (58.23%), Query Frame = 0
Query:   46 VIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQ-PGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAHQ 201
            VI DV+D F P ++  + Y S  +  G  I P    + P+V L GS+   +LYTL M+DPDAPSP  P+ RE+LHWIV +I  G+ D  +G E+V Y  P PP G HRYV T+ +Q G      RPP  RG F TR F  + G+ + V A +F A  +
Sbjct:   13 VIGDVLDMFSPTLEFTVHYGSKQVANGCEIKPSAAANKPKVQLSGSRLSNNLYTLVMTDPDAPSPSEPTMREWLHWIVVDIAEGS-DATKGKELVSYMGPRPPTGIHRYVFTLFQQKGPITEETRPPDARGSFNTRNFAAQNGLGLPVAAVYFNAQKE 169          
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|659084754|ref|XP_008443056.1| (PREDICTED: protein MOTHER of FT and TFL1-like [Cucumis melo])

HSP 1 Score: 132.109 bits (331), Expect = 1.467e-35
Identity = 68/157 (43.31%), Postives = 98/157 (62.42%), Query Frame = 0
Query:   46 VIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAHQ 201
            VI DV+D F P   + + ++S  +T G  I P   V+ P++ + G  P  LYTL M+DPDAPSP  P  RE++HWI+ +IPGGAN +++G E+VPY+ P PP G HRY+L + +Q G   M +  PA R  F TR F +   +D+ V AT+F +  +
Sbjct:   13 VIGDVVDMFVPTATMSVYFNSKHVTNGCDIKPSLAVNPPRLVISG-HPCDLYTLVMTDPDAPSPSEPHMREWVHWIIVDIPGGAN-LSQGKEIVPYSGPRPPIGIHRYILLLFKQKGPIGM-IDQPASRANFNTRLFARHFNLDLPVAATYFNSQKE 166          
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|449437912|ref|XP_004136734.1| (PREDICTED: protein MOTHER of FT and TF 1-like [Cucumis sativus] >gi|700204170|gb|KGN59303.1| hypothetical protein Csa_3G807330 [Cucumis sativus])

HSP 1 Score: 131.724 bits (330), Expect = 2.415e-35
Identity = 68/157 (43.31%), Postives = 97/157 (61.78%), Query Frame = 0
Query:   46 VIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAHQ 201
            VI DV+D F P   + + ++S  +T G  I P   V+ P++ + G  P  LYTL M+DPDAPSP  P  RE++HWI+ +IPGGAN + +G E+VPY+ P PP G HRY+L + +Q G   M +  PA R  F TR F +   +D+ V AT+F +  +
Sbjct:   13 VIGDVVDMFVPTATMSVYFNSKHVTNGCDIKPSLAVNPPRLVISG-HPCDLYTLVMTDPDAPSPSEPHMREWVHWIIVDIPGGAN-LTQGKEIVPYSGPRPPIGIHRYILLLFKQKGPIGM-IDQPASRANFNTRLFARHFNLDLPVAATYFNSQKE 166          
BLAST of EWM29920.1 vs. NCBI_GenBank
Match: gi|1117528111|ref|XP_019446160.1| (PREDICTED: protein MOTHER of FT and TFL1-like [Lupinus angustifolius])

HSP 1 Score: 131.724 bits (330), Expect = 3.607e-35
Identity = 76/195 (38.97%), Postives = 108/195 (55.38%), Query Frame = 0
Query:    8 FLLTFAFLSVASILQPPHRFGAVAQMTKHHAANLRDAGVIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAHQ 201
            FLLT +FL +A+ + P                 L    VI DV+D F P V + + + +  +T G  I P   V  P++TL G+   +LYTL M+DPDAPSP  P HRE +HWIV+NIPGG N   +G E++PY  P PP G HRY+L + EQ G   +  +PP+ R  F TR F ++  + + V   +F +  +
Sbjct:   11 FLLTISFLIMATSVDP-----------------LIIGRVIGDVVDMFVPSVNMSVYFGTKHVTNGCHIKPSMAVDPPRITLTGNI-DNLYTLVMTDPDAPSPSEPIHRELIHWIVTNIPGGTNP-NQGNEILPYGGPRPPLGIHRYILVLFEQKGPLDLVEQPPS-RASFNTRYFARQLNLGLPVATVYFNSQKE 185          
The following BLAST results are available for this feature:
BLAST of EWM29920.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112503|gb|EWM29920.1|1.391e-146100.00tf1-like protein [Nannochloropsis gaditana][more]
gi|168033265|ref|XP_001769136.1|2.366e-3743.67predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1047209949|dbj|BAV32137.1|3.127e-3742.86MOTHER OF FT AND TFL1 [Symplocarpus renifolius][more]
gi|1137184742|gb|OMO59963.1|4.154e-3743.95Phosphatidylethanolamine-binding protein PEBP [Cor... [more]
gi|1137231847|gb|OMO94933.1|6.070e-3743.95Phosphatidylethanolamine-binding protein PEBP [Cor... [more]
gi|1026027511|ref|XP_016560013.1|2.768e-3644.30PREDICTED: protein MOTHER of FT and TFL1-like [Cap... [more]
gi|720041365|ref|XP_010268882.1|7.775e-3643.67PREDICTED: protein MOTHER of FT and TFL1-like [Nel... [more]
gi|659084754|ref|XP_008443056.1|1.467e-3543.31PREDICTED: protein MOTHER of FT and TFL1-like [Cuc... [more]
gi|449437912|ref|XP_004136734.1|2.415e-3543.31PREDICTED: protein MOTHER of FT and TF 1-like [Cuc... [more]
gi|1117528111|ref|XP_019446160.1|3.607e-3538.97PREDICTED: protein MOTHER of FT and TFL1-like [Lup... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna745rna745Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications