EWM23247.1, cds7426 (CDS) Nannochloropsis gaditana

Overview
NameEWM23247.1
Unique Namecds7426
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:600812..600816 -
Alignment locationCM002471.1:600158..600479 -
Alignment locationCM002471.1:599799..599969 -
Alignment locationCM002471.1:599431..599574 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23247.1
Productendonuclease iii
Orig transcript idgnl|cribi|Naga_101242g1.5536.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:600812..600816 -
CM002471.1supercontigCM002471.1:600158..600479 -
CM002471.1supercontigCM002471.1:599799..599969 -
CM002471.1supercontigCM002471.1:599431..599574 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006284base-excision repair
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR003265HhH-GPD_domain
IPR011257DNA_glycosylase
Homology
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|585104214|gb|EWM23247.1| (endonuclease iii [Nannochloropsis gaditana])

HSP 1 Score: 414.461 bits (1064), Expect = 3.063e-146
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query:    1 MRGPVRSKRNASSPSNPTKRSTKKSRNAVLAPSTTSLTGASSSKANPPSLPPSLLPSPPPPPPALQAKADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGESSSPSPASGTRRPPWSCPKPLPTLPSPSTRTCTDAPAGGASARTRRT 213
            MRGPVRSKRNASSPSNPTKRSTKKSRNAVLAPSTTSLTGASSSKANPPSLPPSLLPSPPPPPPALQAKADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGESSSPSPASGTRRPPWSCPKPLPTLPSPSTRTCTDAPAGGASARTRRT
Sbjct:    1 MRGPVRSKRNASSPSNPTKRSTKKSRNAVLAPSTTSLTGASSSKANPPSLPPSLLPSPPPPPPALQAKADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGESSSPSPASGTRRPPWSCPKPLPTLPSPSTRTCTDAPAGGASARTRRT 213          
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|931429158|gb|KPK14970.1| (endonuclease III [Myxococcales bacterium SG8_38])

HSP 1 Score: 130.183 bits (326), Expect = 4.147e-34
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0
Query:   68 KADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGE 166
            KA+ I  +LD LYP PPIPL H D ++LLVAV+LSAQTTD KVN+VTPALFQ+AP P+ +AALP   +L+LIR VGLAP KA+NL  MA+KLVD+ GG+
Sbjct:    6 KAERIGAILDRLYPEPPIPLHHRDPFTLLVAVMLSAQTTDKKVNEVTPALFQEAPDPESMAALPVERILELIRTVGLAPTKAKNLQAMARKLVDEHGGK 104          
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|501182043|ref|WP_012225149.1| (endonuclease III [Candidatus Microthrix parvicella] >gi|499278683|emb|CCM63075.1| endonuclease III [Candidatus Microthrix parvicella RN1])

HSP 1 Score: 123.25 bits (308), Expect = 2.097e-31
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   68 KADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGE 166
            KAD I  +LD LYP PPIPLDH + Y+LLVAV LSAQTTD KVNQVTPALF +A TP+ +AAL    +L LIR VGLAP KARNL  MA ++VD  GGE
Sbjct:    6 KADRIGEILDRLYPEPPIPLDHRNPYTLLVAVALSAQTTDKKVNQVTPALFDRASTPEEMAALDPDEILGLIREVGLAPTKARNLSTMAHQIVDA-GGE 103          
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|1200451021|gb|OUV66875.1| (endonuclease III [Euryarchaeota archaeon TMED129])

HSP 1 Score: 119.783 bits (299), Expect = 4.919e-30
Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = 0
Query:   68 KADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGESSSPSPASGTRRPPWSCPKPL 187
            KA+ I  LLDYLYP  PIPLD  D Y+LLVAV+LSAQTTD KVNQVTP LFQ A  P  + AL   ++ D+IR VGLAP KA+NL  MA+++++           + G  +P W+  + L
Sbjct:    6 KAEKIGELLDYLYPEQPIPLDXKDEYTLLVAVMLSAQTTDKKVNQVTPKLFQIADNPVKMHALEVDVIQDIIREVGLAPTKAKNLKKMAEQIIE-----------SGGVIKPEWNFLESL 114          
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|665913539|ref|WP_031279591.1| (endonuclease III [Candidatus Microthrix parvicella])

HSP 1 Score: 118.627 bits (296), Expect = 1.305e-29
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 0
Query:   68 KADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGE 166
            KAD I  +LD LYP PPIPLDH + Y+LLVAV LSAQTTD KVNQVTPALF +A TP+ +AAL    +L  IR VGLAP K+RNL  MA ++V+  GGE
Sbjct:    6 KADRIGEILDRLYPDPPIPLDHRNPYTLLVAVALSAQTTDKKVNQVTPALFDRASTPEEMAALDPDEILGFIREVGLAPTKSRNLSTMAHQIVEA-GGE 103          
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|1179934959|ref|WP_083457314.1| (endonuclease III [Sandaracinus amylolyticus] >gi|816955642|gb|AKF05148.1| Endonuclease III [Sandaracinus amylolyticus])

HSP 1 Score: 117.857 bits (294), Expect = 4.435e-29
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 0
Query:   68 KADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGE 166
            KA  I  +L+ LYPSPPIPLDH D ++LLVAV+LSAQTTD KVN+VTPALF  APTP+ +AAL  A +L  IR VGL+P KA+ L  +A K+  + GG+
Sbjct:   11 KAARILEILERLYPSPPIPLDHVDAFTLLVAVVLSAQTTDKKVNEVTPALFAAAPTPEAMAALSEAEILAYIRQVGLSPQKAKALKGLATKIATEHGGQ 109          
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|927067747|ref|WP_053777976.1| (endonuclease III [Gordonia sp. NB4-1Y] >gi|926660990|gb|KOY49305.1| endonuclease [Gordonia sp. NB4-1Y])

HSP 1 Score: 117.087 bits (292), Expect = 6.088e-29
Identity = 62/101 (61.39%), Postives = 74/101 (73.27%), Query Frame = 0
Query:   66 QAKADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGE 166
            Q K + I  LLD LYP+ PIPLDH D Y+LLVAV LSAQTTD KVNQVTPALF  A TP+ +AAL    +L+LIR +GLAP KARNL   A ++++  GGE
Sbjct:    4 QEKVERIGTLLDELYPTQPIPLDHTDAYTLLVAVALSAQTTDKKVNQVTPALFAVADTPEKMAALGPDRILELIREIGLAPTKARNLWTAAGQIIEA-GGE 103          
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|505254315|ref|WP_015441417.1| (endonuclease III [Ilumatobacter coccineus] >gi|464099288|dbj|BAN02170.1| putative endonuclease III [Ilumatobacter coccineus YM16-304])

HSP 1 Score: 116.701 bits (291), Expect = 6.913e-29
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 0
Query:   66 QAKADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGE 166
            Q KAD I  +L+ LYP+PP+PLDH D Y+LLVAV LSAQTTD KVN+VTPALF+ A TP+ +AAL    +L  I+ VGLAP KA+NL  MA +++D  GGE
Sbjct:    4 QEKADRIGEILEELYPNPPVPLDHTDPYTLLVAVALSAQTTDKKVNEVTPALFEAAGTPEKMAALDPEEILGYIKTVGLAPTKAKNLWLMANQILDA-GGE 103          
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|750188438|ref|WP_040492512.1| (endonuclease III [Ilumatobacter nonamiensis])

HSP 1 Score: 115.161 bits (287), Expect = 2.403e-28
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 0
Query:   66 QAKADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGE 166
            Q KAD I  +LD LYP+PP+PLDH D Y+LLVAV+LSAQTTD KVN+VTP LF  A TP+ +AAL    +L  IR VGLAP KA+NL  MA +++D  GGE
Sbjct:    4 QDKADRIGEILDELYPNPPVPLDHTDPYTLLVAVMLSAQTTDKKVNEVTPGLFAVADTPQKMAALDPEDILAHIRTVGLAPTKAKNLWLMANQIIDA-GGE 103          
BLAST of EWM23247.1 vs. NCBI_GenBank
Match: gi|747217533|gb|KIG17077.1| (Endonuclease III [Enhygromyxa salina])

HSP 1 Score: 115.931 bits (289), Expect = 2.505e-28
Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 0
Query:   68 KADTIHRLLDYLYPSPPIPLDHYDNYSLLVAVILSAQTTDGKVNQVTPALFQQAPTPKHLAALPHALVLDLIRPVGLAPGKARNLINMAQKLVDDFGGE 166
            KA  I  +LD LYP PPIPL H D ++LL+AV+LSAQTTD +VN+VTPALF   PTP  +AAL  A +L  IR +GLAP KA+ +  +AQ+LVD+F GE
Sbjct:    6 KAQKILAILDELYPDPPIPLRHQDPFTLLIAVLLSAQTTDARVNEVTPALFNDGPTPATMAALSTATILRHIRTLGLAPTKAKRVKALAQQLVDEFDGE 104          
The following BLAST results are available for this feature:
BLAST of EWM23247.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
x 1
01SequenceEWM23247.1KPK14970.1WP_012225149.1OUV66875.1WP_031279591.1WP_083457314.1WP_053777976.1WP_015441417.1WP_040492512.1KIG17077.1
Match NameE-valueIdentityDescription
gi|585104214|gb|EWM23247.1|3.063e-146100.00endonuclease iii [Nannochloropsis gaditana][more]
gi|931429158|gb|KPK14970.1|4.147e-3465.66endonuclease III [Myxococcales bacterium SG8_38][more]
gi|501182043|ref|WP_012225149.1|2.097e-3166.67endonuclease III [Candidatus Microthrix parvicella... [more]
gi|1200451021|gb|OUV66875.1|4.919e-3050.83endonuclease III [Euryarchaeota archaeon TMED129][more]
gi|665913539|ref|WP_031279591.1|1.305e-2963.64endonuclease III [Candidatus Microthrix parvicella... [more]
gi|1179934959|ref|WP_083457314.1|4.435e-2959.60endonuclease III [Sandaracinus amylolyticus] >gi|8... [more]
gi|927067747|ref|WP_053777976.1|6.088e-2961.39endonuclease III [Gordonia sp. NB4-1Y] >gi|9266609... [more]
gi|505254315|ref|WP_015441417.1|6.913e-2960.40endonuclease III [Ilumatobacter coccineus] >gi|464... [more]
gi|750188438|ref|WP_040492512.1|2.403e-2861.39endonuclease III [Ilumatobacter nonamiensis][more]
gi|747217533|gb|KIG17077.1|2.505e-2858.59Endonuclease III [Enhygromyxa salina][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7444rna7444Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications