EWM23258.1, cds7415 (CDS) Nannochloropsis gaditana

Overview
NameEWM23258.1
Unique Namecds7415
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:572297..572461 -
Alignment locationCM002471.1:572010..572090 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23258.1
Productmicrotubule associated protein
Orig transcript idgnl|cribi|Naga_103480g1.3226.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:572297..572461 -
CM002471.1supercontigCM002471.1:572010..572090 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR011989ARM-like
Homology
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|585104241|gb|EWM23258.1| (microtubule associated protein [Nannochloropsis gaditana])

HSP 1 Score: 160.999 bits (406), Expect = 4.113e-50
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query:    1 MRLVCDLYPFSKYGPYLVAALGTKNLRSRAACLDECRRLLDYGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVFER 81
            MRLVCDLYPFSKYGPYLVAALGTKNLRSRAACLDECRRLLDYGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVFER
Sbjct:    1 MRLVCDLYPFSKYGPYLVAALGTKNLRSRAACLDECRRLLDYGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVFER 81          
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|298707422|emb|CBJ30051.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.3218 bits (168), Expect = 6.381e-12
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 0
Query:    7 LYPFSKYGPYLVAALGTKNLRSRAACLDECRRLLDY-GPASALGKRGLREIGKYLDAREPEVRSAALEVI 75
            L  ++KY P L+ A  +KN R+R ACL E  R +   GPASALGK+GL+E+ K++D+ + EVRSAAL+ +
Sbjct: 1411 LCSYAKYSPLLLQATASKNSRTRIACLLELSRCIGADGPASALGKKGLKELAKHVDSDQAEVRSAALDAV 1480          
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|698797942|ref|XP_009832000.1| (hypothetical protein H257_07966 [Aphanomyces astaci] >gi|574112928|gb|ETV78419.1| hypothetical protein H257_07966 [Aphanomyces astaci])

HSP 1 Score: 63.5438 bits (153), Expect = 6.249e-10
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 0
Query:    1 MRLVCDLYPFSKYGPYLVAAL-GTKNLRSRAACLDECRRLLDYGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVF 79
            +RLV  +YP +K  PYL+  +  +KN +SR+ CLD    + D    +A+G++ LR++GKY+D  E EVR +A+  +++++
Sbjct: 1451 LRLVVHVYPSAKLTPYLLECITNSKNSKSRSECLDLIEFIADTKGHAAVGRKTLRDVGKYVDCAEKEVRESAIGAVVKMY 1530          
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|673025252|ref|XP_008866587.1| (hypothetical protein H310_04156 [Aphanomyces invadans] >gi|574478153|gb|ETW05149.1| hypothetical protein H310_04156 [Aphanomyces invadans])

HSP 1 Score: 63.5438 bits (153), Expect = 6.497e-10
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 0
Query:    1 MRLVCDLYPFSKYGPYLVAAL-GTKNLRSRAACLDECRRLLDYGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVF 79
            +RLV  +YP +K  PYL+  +  +KN +SR+ CLD    + +    +A+G++ LR+I KY+D  E EVR +A+  ++ +F
Sbjct: 1460 LRLVVQVYPSAKLTPYLLDCITNSKNSKSRSECLDLIEYIAETKGHAAVGRKTLRDIAKYVDCSEKEVRESAIAAVVRIF 1539          
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|1214700020|gb|OWZ12692.1| (Cytoskeleton-associated protein [Phytophthora megakarya])

HSP 1 Score: 62.3882 bits (150), Expect = 1.706e-9
Identity = 28/82 (34.15%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    1 MRLVCDLYPFSKYGPYLVAAL-GTKNLRSRAACLDECRRLLDYGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVFER 81
            M+LV D+Y   KY P+L+    G+KN++SR  C+D    ++     + LG++ ++++GKY+ A E E+R +A+  ++ V++R
Sbjct: 1489 MKLVVDVYNPEKYVPFLMECFNGSKNMKSRCECIDLVEYIVSVHGYNVLGRKCIKDVGKYVVAHEKELRESAINALIAVYKR 1570          
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|1173943399|gb|OQR92258.1| (cytoskeleton-associated protein [Achlya hypogyna])

HSP 1 Score: 60.4622 bits (145), Expect = 8.376e-9
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 0
Query:    1 MRLVCDLYPFSKYGPYLVAAL-GTKNLRSRAACLDECRRLLDYGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVF 79
            MRLV  ++P +KY PYL+  L  +KN +SR  CLD    ++     +A+GK+ LRE+ K +D  E +VR  A++ ++ V+
Sbjct: 1419 MRLVVQVFPAAKYVPYLLECLANSKNTKSRTECLDALEFIVAEQGYAAVGKKCLREVAKCVDCSEKDVRECAIQTLVAVY 1498          
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|695399397|ref|XP_009522253.1| (hypothetical protein PHYSODRAFT_350421 [Phytophthora sojae] >gi|348679720|gb|EGZ19536.1| hypothetical protein PHYSODRAFT_350421 [Phytophthora sojae])

HSP 1 Score: 60.077 bits (144), Expect = 9.061e-9
Identity = 28/82 (34.15%), Postives = 51/82 (62.20%), Query Frame = 0
Query:    1 MRLVCDLYPFSKYGPYLVAAL-GTKNLRSRAACLDECRRLLDYGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVFER 81
            M+LV D+Y   KY PYL+    G+KN++SR  C+D    ++       +G++ ++++GKY+ A E E+R +A+  ++ V+ R
Sbjct: 1502 MKLVVDVYNPEKYVPYLMECFNGSKNMKSRCECIDLVEYIVSVHGYQMIGRKCIKDVGKYVVAHEKELRESAINTLVAVYMR 1583          
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|170043566|ref|XP_001849454.1| (microtubule associated protein xmap215 [Culex quinquefasciatus] >gi|167866860|gb|EDS30243.1| microtubule associated protein xmap215 [Culex quinquefasciatus])

HSP 1 Score: 60.077 bits (144), Expect = 1.155e-8
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query:    1 MRLVCDLYPFSKYGPYLVAALGTKNLRSRAACLDECRRLLD-YGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVF 79
            +R +C +YPF+K   +++ AL +KN R RA CLDE   L++ YG  +A     L+EI K++  R+  VR+AAL  +++ +
Sbjct: 1289 LRQICLVYPFAKVFVFIMDALKSKNARQRAECLDELGYLIETYGLTAA-----LKEIAKHISDRDNSVRNAALNTVVQAY 1363          
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|953487952|emb|CEG47969.1| (Microtubule-associated protein [Plasmopara halstedii])

HSP 1 Score: 60.077 bits (144), Expect = 1.180e-8
Identity = 27/82 (32.93%), Postives = 51/82 (62.20%), Query Frame = 0
Query:    1 MRLVCDLYPFSKYGPYLVAAL-GTKNLRSRAACLDECRRLLDYGPASALGKRGLREIGKYLDAREPEVRSAALEVILEVFER 81
            M+LV D++   +Y PYL+    G+KN++SR  C+D    ++       +G++ +RE+ KY+ A E E+R +A+ +++ V+ R
Sbjct: 1494 MKLVVDVFSPERYVPYLIDCFNGSKNMKSRCECIDLVEYIVTVYGHHVIGRKCVREVSKYVVAHEKELRESAISLLVSVYTR 1575          
BLAST of EWM23258.1 vs. NCBI_GenBank
Match: gi|668447792|gb|KFB37532.1| (hypothetical protein ZHAS_00004761 [Anopheles sinensis])

HSP 1 Score: 58.5362 bits (140), Expect = 4.130e-8
Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    1 MRLVCDLYPFSKYGPYLVAALGTKNLRSRAACLDECRRLLD-YG-----PASALGKRGLREIGKYLDAREPEVRSAALEVILEVF 79
            +R +C LYPFSK   +++ AL +KN R RA CLDE   L++ YG     P+  +    L+EI +++  R+  VR+AAL  +++ +
Sbjct: 1958 LRQICLLYPFSKVFVFIMDALKSKNARQRAECLDELGYLIETYGLTVCQPSQPV---ALKEIARHISDRDNAVRNAALNAVVQAY 2039          
The following BLAST results are available for this feature:
BLAST of EWM23258.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104241|gb|EWM23258.1|4.113e-50100.00microtubule associated protein [Nannochloropsis ga... [more]
gi|298707422|emb|CBJ30051.1|6.381e-1250.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|698797942|ref|XP_009832000.1|6.249e-1037.50hypothetical protein H257_07966 [Aphanomyces astac... [more]
gi|673025252|ref|XP_008866587.1|6.497e-1037.50hypothetical protein H310_04156 [Aphanomyces invad... [more]
gi|1214700020|gb|OWZ12692.1|1.706e-934.15Cytoskeleton-associated protein [Phytophthora mega... [more]
gi|1173943399|gb|OQR92258.1|8.376e-938.75cytoskeleton-associated protein [Achlya hypogyna][more]
gi|695399397|ref|XP_009522253.1|9.061e-934.15hypothetical protein PHYSODRAFT_350421 [Phytophtho... [more]
gi|170043566|ref|XP_001849454.1|1.155e-838.75microtubule associated protein xmap215 [Culex quin... [more]
gi|953487952|emb|CEG47969.1|1.180e-832.93Microtubule-associated protein [Plasmopara halsted... [more]
gi|668447792|gb|KFB37532.1|4.130e-837.65hypothetical protein ZHAS_00004761 [Anopheles sine... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7433rna7433Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications