EWM23278.1, cds7396 (CDS) Nannochloropsis gaditana

Overview
NameEWM23278.1
Unique Namecds7396
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:533807..534429 +
Alignment locationCM002471.1:534638..534947 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23278.1
ProductAnkyrin repeat-containing domain protein
Orig transcript idgnl|cribi|Naga_100181g2.3853.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:533807..534429 +
CM002471.1supercontigCM002471.1:534638..534947 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|585104282|gb|EWM23278.1| (Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 628.632 bits (1620), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MPFVTASKLTLSVLFSSVTRAVTFSCVVCPPFRPLSPIVLAMSAASSSSKSSCSSSSSLPSDSTSTSCTSYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESGETPMDVARSAGAWDVVQLLLPYYTSGSRASSAGVSQTCDLPG 310
            MPFVTASKLTLSVLFSSVTRAVTFSCVVCPPFRPLSPIVLAMSAASSSSKSSCSSSSSLPSDSTSTSCTSYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESGETPMDVARSAGAWDVVQLLLPYYTSGSRASSAGVSQTCDLPG
Sbjct:    1 MPFVTASKLTLSVLFSSVTRAVTFSCVVCPPFRPLSPIVLAMSAASSSSKSSCSSSSSLPSDSTSTSCTSYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESGETPMDVARSAGAWDVVQLLLPYYTSGSRASSAGVSQTCDLPG 310          
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|551673827|ref|XP_005839669.1| (hypothetical protein GUITHDRAFT_84668 [Guillardia theta CCMP2712] >gi|428183832|gb|EKX52689.1| hypothetical protein GUITHDRAFT_84668 [Guillardia theta CCMP2712])

HSP 1 Score: 260.381 bits (664), Expect = 1.659e-83
Identity = 128/226 (56.64%), Postives = 159/226 (70.35%), Query Frame = 0
Query:   65 STSCTSYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESGETPMDVARSAGAWDVVQLLLPY 290
            S + + Y R DGVR+ +DPY+P M  KYGAPG TDS+GFDPY+D+VGPGIYGG VKRDA GK+++G QYQ HNPRPGP+Y+G GY  +  A+  GP+A+  LL+  P  V+E++TGGATPLHMAGMS++NQ  T  LIA GG+IEA DTYGYRPLHRMASNNL +GA ALL AGAD  A                     T+SGETP+ +AR + A  V+ +L  Y
Sbjct:   22 SANGSQYYRKDGVRIVHDPYSPGMADKYGAPGETDSDGFDPYADTVGPGIYGGKVKRDAQGKVLIGRQYQNHNPRPGPIYSGEGYTEMSRALSSGPEAVKKLLELDPSLVHEISTGGATPLHMAGMSRKNQLSTELLIASGGNIEAEDTYGYRPLHRMASNNLDIGAEALLKAGADGAA--------------------RTQSGETPLSIARQSSAKGVISVLNKY 227          
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|873223063|emb|CEM29744.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 252.677 bits (644), Expect = 5.696e-80
Identity = 133/267 (49.81%), Postives = 167/267 (62.55%), Query Frame = 0
Query:   26 CVVCPPFRPLSPIVLAMSAASSSSKSSCSSSSSLPSDSTSTSCT-SYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESG-ETPMDVARSAGAWDVVQLLLPY 290
            C+     RP +      S++ ++    CS+S++L   S S++    Y R DGVR+ +DPY   M   YGA G TD EGFDPY+D+VGPGIYGG VK+D  G++V G QYQ HNP PGPVYAGGGYAPI+EA+  G +A+ ++L   P A+ E TTGGA PLHM GMSQRNQ  T FL+ +G D   VDTYGY PLHRMASNNLA+GA ALL+ G  P  P                    T+ G ETPM +AR + A DV+ +L  Y
Sbjct:    9 CLFLASVRPSAFASPPPSSSCATQGGLCSTSATLTRMSASSAAAREYYRKDGVRIQHDPYAKGMAEHYGAQGNTDPEGFDPYADTVGPGIYGGKVKKDEKGEVVYGRQYQNHNPNPGPVYAGGGYAPIIEALSKGKEAVEEILAISPSALEEETTGGARPLHMCGMSQRNQLMTEFLLDKGADPNVVDTYGYTPLHRMASNNLAIGARALLERGVSPTQP--------------------TKHGHETPMSIARGSAARDVIAVLQEY 255          
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|397640334|gb|EJK74063.1| (hypothetical protein THAOC_04284 [Thalassiosira oceanica])

HSP 1 Score: 236.498 bits (602), Expect = 1.447e-72
Identity = 121/223 (54.26%), Postives = 148/223 (66.37%), Query Frame = 0
Query:   65 STSCTSYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESGETPMDVARSAGAWDVVQLL 287
            ST    Y R DGVR+ +DP+ P M  KYG PG+TD+EGFDPY+DSVG GIYGG VKRDADG+IV+G QYQGHNPRPGPVY+GGGY P  + +      L  LL   P+ VN+VTTGGA PLHM GMS+  Q   + L+ RG DIEA+DTYG+ PLHRMASNNLA GA  LL+AGAD  +                      ++G TPM +AR + A  V+++L
Sbjct:    2 STGAEDYYRHDGVRITHDPFAPGMAEKYGLPGKTDNEGFDPYADSVGAGIYGGIVKRDADGEIVIGRQYQGHNPRPGPVYSGGGYTPSTKMLTDIEGQLKPLLGRFPDLVNDVTTGGAQPLHMCGMSKSKQHAVSELVVRGADIEALDTYGFTPLHRMASNNLAEGARMLLEAGADVSSTG--------------------KAGATPMSIARESRATAVMKVL 204          
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|255078036|ref|XP_002502598.1| (hypothetical protein MICPUN_113339, partial [Micromonas commoda] >gi|226517863|gb|ACO63856.1| hypothetical protein MICPUN_113339, partial [Micromonas commoda])

HSP 1 Score: 222.246 bits (565), Expect = 3.184e-67
Identity = 144/277 (51.99%), Postives = 171/277 (61.73%), Query Frame = 0
Query:   25 SCVVCPPFRPLSPIVLAMSAASSSSKSSCSSSSSLPSDSTSTSCTSYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEA-------MRLGP----DALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESGETPMDVARSAGAWDVVQLLLPY 290
            S  +CP  R L     A+ AAS   ++S S  +++PS        SY R DGV++ +DPY P M AKYGAPG+TD++GFDPY+DSVG GIY G V+R ADG +V+G QYQGHNPRPGPVY+GGGY PI EA       MR G       L  LLDA P+ VN+V TGGA+PLH  GMS+ NQ  TAFLIARG D+ A+DTYGY PL RMASNNLAVGAAALL  GA+P A                           P DVA  A A DV+ +L  Y
Sbjct:    4 SWRLCP--RTLLLFTSAVHAASPV-RASTSCRAAMPS--------SYYRKDGVKITHDPYAPGMAAKYGAPGKTDADGFDPYADSVGAGIYSGTVQRAADGSVVIGRQYQGHNPRPGPVYSGGGYTPISEAISRFHAEMRSGAAETDTTLAKLLDAHPDLVNDVATGGASPLHTCGMSRSNQHATAFLIARGADLAAMDTYGYTPLDRMASNNLAVGAAALLAFGAEPDAHG------------------------PPFDVAMDAEAKDVLAVLEKY 245          
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|303284695|ref|XP_003061638.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226456968|gb|EEH54268.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 216.468 bits (550), Expect = 7.855e-66
Identity = 129/270 (47.78%), Postives = 159/270 (58.89%), Query Frame = 0
Query:   63 STSTSCTSYVRADGVRMNYDPYTPEM--------------RAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRD-ADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRL----------GPDA-LNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESGETPMDVARSAGAWDVVQLLLPYYTSGSRASSAGVSQTC 306
            S+S++  ++ RADGVR+ +DP+ P M              R KYGAPG TD +GFDPY+DSVG GIYGG VKR   DG +V+G QYQGHNPRPGPVYAGGGY P+ +A+             P+  L  LLDA P+ VN+V+TGGA+PLH  GMS+ NQ  TAFLI+RG D++AVD YG+ PL R ASNNLA+ A ALL  GADP A                           P DVA  + A DV++ L      G R  S G S+T 
Sbjct:    2 SSSSAKAAHYRADGVRITHDPHAPGMAEVHSIHWSPYDRVRVKYGAPGETDRDGFDPYADSVGAGIYGGVVKRRPEDGSVVIGKQYQGHNPRPGPVYAGGGYTPVSDAIATFNREVSGGVPTPETTLAKLLDAHPDLVNDVSTGGASPLHTCGMSRANQHATAFLISRGADVDAVDAYGFTPLDRAASNNLAIAAEALLKRGADPDANG------------------------PPRDVATQSEARDVLKALDARAKEGGRVDS-GASRTL 246          
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|1210528369|dbj|GAX13058.1| (hypothetical protein FisN_2Hh603 [Fistulifera solaris])

HSP 1 Score: 213.001 bits (541), Expect = 4.257e-65
Identity = 103/180 (57.22%), Postives = 124/180 (68.89%), Query Frame = 0
Query:   64 TSTSCTSYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKA 243
            T      Y RADGVR+ +DPY P M  KYG PG T+ +GFDPY+D+VGPGIYGG+V+R+ DG IV+G QYQ HN RPGPVY G GY+ +  A+  GPD +  +L    E   E++TGGA PLHM GMSQ+ Q  T  LI  G D+ A DTYGY P+HRMASNNLA+G  AL  AG DP A
Sbjct:    2 TQKQENEYYRADGVRITHDPYAPGMAEKYGLPGETNPDGFDPYADTVGPGIYGGSVERNKDGTIVIGQQYQNHNHRPGPVYDGRGYSLMSRAIHAGPDKVKAILADYLELREEISTGGARPLHMCGMSQKGQLCTQALIDAGADLHAQDTYGYTPMHRMASNNLAIGGEALARAGVDPNA 181          
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|1210530302|dbj|GAX11066.1| (hypothetical protein FisN_2Lh603 [Fistulifera solaris])

HSP 1 Score: 208.764 bits (530), Expect = 1.686e-63
Identity = 101/174 (58.05%), Postives = 121/174 (69.54%), Query Frame = 0
Query:   69 TSYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPK 242
              Y RADGVR+ +DPY P M  KYG PG T+ EGFDPY+D+VGPGIYGG+V+R  DG IV+G QYQ HN R GPVY G GY+ +  A+  GP+ +  +L   PE   E++TGGA PLHM GMSQ+ Q  T  LI  G D+ A DTYGY P+HRMASNNLA+G  AL  AG DP 
Sbjct:    7 NEYYRADGVRITHDPYAPGMAEKYGLPGETNPEGFDPYADTVGPGIYGGSVERYEDGTIVIGQQYQNHNHRLGPVYDGRGYSLMSRAIHAGPEKVKAILADYPELREEISTGGARPLHMCGMSQKGQLCTQALIDAGADLHAQDTYGYTPMHRMASNNLAIGGEALARAGVDPN 180          
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|1072235307|gb|OEU20036.1| (hypothetical protein FRACYDRAFT_217021 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 206.453 bits (524), Expect = 1.003e-62
Identity = 100/172 (58.14%), Postives = 121/172 (70.35%), Query Frame = 0
Query:   70 SYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADP 241
             + R DGV+++YDPY   M  KYG PG TD+EGFDPY+DSVG GIYGG VKRD +G IV+G+QYQ HN RPGPVY G GY+ + +A+  GP+ + ++L   PE   E++TGGA PLHM GMS  NQ  T  LI    D+ A DTYGY  LHRMASNNL VG  AL+ AG DP
Sbjct:    2 EHYRKDGVKIDYDPYAKGMAEKYGLPGNTDNEGFDPYADSVGAGIYGGCVKRDNEGNIVIGEQYQNHNNRPGPVYDGRGYSLMSKAIHAGPEKVTEILKDYPELKEEISTGGARPLHMCGMSSNNQLSTQSLIDAKADLYAQDTYGYTALHRMASNNLDVGGEALVRAGHDP 173          
BLAST of EWM23278.1 vs. NCBI_GenBank
Match: gi|224003505|ref|XP_002291424.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973200|gb|EED91531.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 200.29 bits (508), Expect = 5.407e-60
Identity = 112/216 (51.85%), Postives = 133/216 (61.57%), Query Frame = 0
Query:   88 MRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDAD-GKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESGETPMDVARSAGAWDVVQLLLPYYTSGSRASSAGV 302
            M  KYG PG+TD EGFDPY DSVG GIYGG V+R ++ G+IV+G QYQ HNPRPGPVYAGGGY P   A+      L  LLD  P+ VN++TTGGA PLHM GMSQ  Q     L+ RG DIEA+DTYG  PLHRMASNNLA GA  LL+AGAD               N+G+        G +PM +A+ + A  V  +L  +    S  S A V
Sbjct:    1 MADKYGRPGKTDDEGFDPYRDSVGAGIYGGIVQRHSETGEIVIGQQYQNHNPRPGPVYAGGGYTPCTLALGDVQRKLIPLLDKYPDLVNDITTGGAQPLHMCGMSQGKQHSVQALVERGADIEALDTYGMTPLHRMASNNLADGARMLLEAGAD-------------VFNEGKI-------GISPMSIAKGSAARAVTNVLYEFAKLNSTGSKANV 196          
The following BLAST results are available for this feature:
BLAST of EWM23278.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104282|gb|EWM23278.1|0.000e+0100.00Ankyrin repeat-containing domain protein [Nannochl... [more]
gi|551673827|ref|XP_005839669.1|1.659e-8356.64hypothetical protein GUITHDRAFT_84668 [Guillardia ... [more]
gi|873223063|emb|CEM29744.1|5.696e-8049.81unnamed protein product [Vitrella brassicaformis C... [more]
gi|397640334|gb|EJK74063.1|1.447e-7254.26hypothetical protein THAOC_04284 [Thalassiosira oc... [more]
gi|255078036|ref|XP_002502598.1|3.184e-6751.99hypothetical protein MICPUN_113339, partial [Micro... [more]
gi|303284695|ref|XP_003061638.1|7.855e-6647.78predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|1210528369|dbj|GAX13058.1|4.257e-6557.22hypothetical protein FisN_2Hh603 [Fistulifera sola... [more]
gi|1210530302|dbj|GAX11066.1|1.686e-6358.05hypothetical protein FisN_2Lh603 [Fistulifera sola... [more]
gi|1072235307|gb|OEU20036.1|1.003e-6258.14hypothetical protein FRACYDRAFT_217021 [Fragilario... [more]
gi|224003505|ref|XP_002291424.1|5.407e-6051.85predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7413rna7413Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications