EWM23290.1, cds7379 (CDS) Nannochloropsis gaditana

Overview
NameEWM23290.1
Unique Namecds7379
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:479780..479782 +
Alignment locationCM002471.1:479933..480052 +
Alignment locationCM002471.1:480302..480382 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23290.1
ProductCytochrome c oxidase assembly protein PET191
Orig transcript idgnl|cribi|Naga_100158g15.7786.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:479780..479782 +
CM002471.1supercontigCM002471.1:479933..480052 +
CM002471.1supercontigCM002471.1:480302..480382 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018793Cyt_c_oxidase_assmbl_Pet191
Homology
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|553183923|ref|XP_005853993.1| (cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >gi|553188969|ref|XP_005854903.1| cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >gi|422294147|gb|EKU21447.1| cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >gi|422295063|gb|EKU22362.1| cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >gi|585104295|gb|EWM23290.1| Cytochrome c oxidase assembly protein PET191 [Nannochloropsis gaditana])

HSP 1 Score: 139.813 bits (351), Expect = 4.188e-42
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
            MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY
Sbjct:    1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67          
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|298711685|emb|CBJ32736.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.7221 bits (195), Expect = 2.645e-18
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
            M + CKEAA AL ACM++  CMK GG L +CLK+ D + C     ++F CKR QLDMRTRIRG R +
Sbjct:    1 MGRDCKEAARALYACMKKTQCMKDGGRLKDCLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 67          
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|1072235601|gb|OEU20330.1| (hypothetical protein FRACYDRAFT_168006 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 76.6406 bits (187), Expect = 4.956e-17
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCMKTG-GSLTECLKSEDVDA-----CSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
            MPK+C EAA +LL CM++  C K    S+ +CLK ++ D      C  QR AY+LCK SQL+MRTRIRGTR Y
Sbjct:    1 MPKACSEAALSLLTCMEESKCFKEDKHSVYDCLKKQNDDPIAAEECKAQRTAYYLCKHSQLNMRTRIRGTRAY 73          
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|1210523186|dbj|GAX17823.1| (hypothetical protein FisN_18Hu023 [Fistulifera solaris])

HSP 1 Score: 72.7886 bits (177), Expect = 1.338e-15
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCM-KTGGSLTECLKSE-DVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
            MP SC EAA++LL CM++ PC+ +   S+ +CL+   + D C   RNAY +CK SQL+MRTRIRG R Y
Sbjct:    1 MPHSCNEAAFSLLQCMEETPCVVEEKRSVYDCLQDPYESDPCRAFRNAYTMCKHSQLNMRTRIRGVRTY 69          
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|325194844|emb|CCA28364.1| (hypothetical protein PITG_00849 [Albugo laibachii Nc14])

HSP 1 Score: 63.5438 bits (153), Expect = 1.301e-11
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCMKTGG-SLTECLKSED-VDACSVQRNAYFLCKRSQLDMRTRIRGTR 65
            M KSC++ A AL  CM +Q CM TG  +L ECL      D C   R AYF CKR QLDMRTR RG +
Sbjct:   24 MGKSCRDMAQALRDCMIKQECMSTGERTLQECLHERKYADECHAYRVAYFECKRGQLDMRTRFRGPK 90          
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|552841378|ref|XP_005850291.1| (hypothetical protein CHLNCDRAFT_20514 [Chlorella variabilis] >gi|307109952|gb|EFN58189.1| hypothetical protein CHLNCDRAFT_20514 [Chlorella variabilis])

HSP 1 Score: 58.151 bits (139), Expect = 7.436e-10
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCMKT-GGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
            M KSCK     L+ C+++  CMKT G  ++EC K  +V  C   RNAY  CKR QLD R+R+RG + Y
Sbjct:    1 MSKSCKGLLKELVKCLRESDCMKTEGKPISECAK--EVPECQGLRNAYSACKRGQLDARSRLRGNKGY 66          
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|551659240|ref|XP_005832389.1| (hypothetical protein GUITHDRAFT_108676 [Guillardia theta CCMP2712] >gi|428176525|gb|EKX45409.1| hypothetical protein GUITHDRAFT_108676 [Guillardia theta CCMP2712])

HSP 1 Score: 58.151 bits (139), Expect = 8.565e-10
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDV-DACSVQRNAYFLCKRSQLDMRTRIRGTR 65
            M  SCK     LL C+   PC   GG++ +CL+  ++ + C   R  +F C+R Q+DMR RIRG R
Sbjct:    1 MSTSCKNLKNKLLICISTTPCANRGGTVKQCLQDNELPEDCKKIRQMFFECRRGQMDMRNRIRGNR 66          
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|673038070|ref|XP_008872996.1| (hypothetical protein H310_08865 [Aphanomyces invadans] >gi|574471113|gb|ETV98121.1| hypothetical protein H310_08865 [Aphanomyces invadans])

HSP 1 Score: 56.225 bits (134), Expect = 5.068e-9
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCMKTG-GSLTECLKSEDV-DACSVQRNAYFLCKRSQLDMRTRIRGTR 65
            M K+C++ A AL  CM ++ CM  G  +L ECL+ E+    C   R AYF CKR Q+DMR RIRG +
Sbjct:    1 MGKACRDMAEALRDCMCEKECMSDGTKTLKECLRMEEFRHECKEYRLAYFECKRGQIDMRQRIRGPK 67          
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|635367645|emb|CCI44162.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 59.3066 bits (142), Expect = 1.180e-8
Identity = 34/62 (54.84%), Postives = 37/62 (59.68%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCMKTGG-SLTECLKSED-VDACSVQRNAYFLCKRSQLDMRTR 60
            M KSC + A AL  CM QQ CM TG  +L ECL      + C   R AYF CKR QLDMRTR
Sbjct:  260 MGKSCHDMALALRDCMIQQECMNTGERTLKECLHERQYANECHAYRVAYFECKRGQLDMRTR 321          
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|698818839|ref|XP_009842448.1| (hypothetical protein H257_15879 [Aphanomyces astaci] >gi|574102599|gb|ETV68149.1| hypothetical protein H257_15879 [Aphanomyces astaci])

HSP 1 Score: 55.4546 bits (132), Expect = 1.216e-8
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0
Query:    1 MPKSCKEAAYALLACMQQQPCMKTG-GSLTECLKSEDV-DACSVQRNAYFLCKRSQLDMRTRIRGTR 65
            M K+C++ A AL  CM ++ CM  G  +L ECL++++    C   R AYF CKR Q+DMR RIRG +
Sbjct:    1 MGKACRDMAEALRDCMCEKECMSDGTKTLKECLRAKEFRHECKEYRLAYFECKRGQVDMRQRIRGPK 67          
The following BLAST results are available for this feature:
BLAST of EWM23290.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553183923|ref|XP_005853993.1|4.188e-42100.00cytochrome c oxidase assembly mitochondrial [Nanno... [more]
gi|298711685|emb|CBJ32736.1|2.645e-1855.22expressed unknown protein [Ectocarpus siliculosus][more]
gi|1072235601|gb|OEU20330.1|4.956e-1753.42hypothetical protein FRACYDRAFT_168006 [Fragilario... [more]
gi|1210523186|dbj|GAX17823.1|1.338e-1552.17hypothetical protein FisN_18Hu023 [Fistulifera sol... [more]
gi|325194844|emb|CCA28364.1|1.301e-1153.73hypothetical protein PITG_00849 [Albugo laibachii ... [more]
gi|552841378|ref|XP_005850291.1|7.436e-1047.06hypothetical protein CHLNCDRAFT_20514 [Chlorella v... [more]
gi|551659240|ref|XP_005832389.1|8.565e-1040.91hypothetical protein GUITHDRAFT_108676 [Guillardia... [more]
gi|673038070|ref|XP_008872996.1|5.068e-947.76hypothetical protein H310_08865 [Aphanomyces invad... [more]
gi|635367645|emb|CCI44162.1|1.180e-854.84unnamed protein product [Albugo candida][more]
gi|698818839|ref|XP_009842448.1|1.216e-846.27hypothetical protein H257_15879 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7396rna7396Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications