EWM23290.1, cds7379 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|553183923|ref|XP_005853993.1| (cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >gi|553188969|ref|XP_005854903.1| cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >gi|422294147|gb|EKU21447.1| cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >gi|422295063|gb|EKU22362.1| cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >gi|585104295|gb|EWM23290.1| Cytochrome c oxidase assembly protein PET191 [Nannochloropsis gaditana]) HSP 1 Score: 139.813 bits (351), Expect = 4.188e-42 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY
Sbjct: 1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|298711685|emb|CBJ32736.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 79.7221 bits (195), Expect = 2.645e-18 Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
M + CKEAA AL ACM++ CMK GG L +CLK+ D + C ++F CKR QLDMRTRIRG R +
Sbjct: 1 MGRDCKEAARALYACMKKTQCMKDGGRLKDCLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 67
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|1072235601|gb|OEU20330.1| (hypothetical protein FRACYDRAFT_168006 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 76.6406 bits (187), Expect = 4.956e-17 Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCMKTG-GSLTECLKSEDVDA-----CSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
MPK+C EAA +LL CM++ C K S+ +CLK ++ D C QR AY+LCK SQL+MRTRIRGTR Y
Sbjct: 1 MPKACSEAALSLLTCMEESKCFKEDKHSVYDCLKKQNDDPIAAEECKAQRTAYYLCKHSQLNMRTRIRGTRAY 73
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|1210523186|dbj|GAX17823.1| (hypothetical protein FisN_18Hu023 [Fistulifera solaris]) HSP 1 Score: 72.7886 bits (177), Expect = 1.338e-15 Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCM-KTGGSLTECLKSE-DVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
MP SC EAA++LL CM++ PC+ + S+ +CL+ + D C RNAY +CK SQL+MRTRIRG R Y
Sbjct: 1 MPHSCNEAAFSLLQCMEETPCVVEEKRSVYDCLQDPYESDPCRAFRNAYTMCKHSQLNMRTRIRGVRTY 69
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|325194844|emb|CCA28364.1| (hypothetical protein PITG_00849 [Albugo laibachii Nc14]) HSP 1 Score: 63.5438 bits (153), Expect = 1.301e-11 Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCMKTGG-SLTECLKSED-VDACSVQRNAYFLCKRSQLDMRTRIRGTR 65
M KSC++ A AL CM +Q CM TG +L ECL D C R AYF CKR QLDMRTR RG +
Sbjct: 24 MGKSCRDMAQALRDCMIKQECMSTGERTLQECLHERKYADECHAYRVAYFECKRGQLDMRTRFRGPK 90
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|552841378|ref|XP_005850291.1| (hypothetical protein CHLNCDRAFT_20514 [Chlorella variabilis] >gi|307109952|gb|EFN58189.1| hypothetical protein CHLNCDRAFT_20514 [Chlorella variabilis]) HSP 1 Score: 58.151 bits (139), Expect = 7.436e-10 Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCMKT-GGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
M KSCK L+ C+++ CMKT G ++EC K +V C RNAY CKR QLD R+R+RG + Y
Sbjct: 1 MSKSCKGLLKELVKCLRESDCMKTEGKPISECAK--EVPECQGLRNAYSACKRGQLDARSRLRGNKGY 66
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|551659240|ref|XP_005832389.1| (hypothetical protein GUITHDRAFT_108676 [Guillardia theta CCMP2712] >gi|428176525|gb|EKX45409.1| hypothetical protein GUITHDRAFT_108676 [Guillardia theta CCMP2712]) HSP 1 Score: 58.151 bits (139), Expect = 8.565e-10 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDV-DACSVQRNAYFLCKRSQLDMRTRIRGTR 65
M SCK LL C+ PC GG++ +CL+ ++ + C R +F C+R Q+DMR RIRG R
Sbjct: 1 MSTSCKNLKNKLLICISTTPCANRGGTVKQCLQDNELPEDCKKIRQMFFECRRGQMDMRNRIRGNR 66
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|673038070|ref|XP_008872996.1| (hypothetical protein H310_08865 [Aphanomyces invadans] >gi|574471113|gb|ETV98121.1| hypothetical protein H310_08865 [Aphanomyces invadans]) HSP 1 Score: 56.225 bits (134), Expect = 5.068e-9 Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCMKTG-GSLTECLKSEDV-DACSVQRNAYFLCKRSQLDMRTRIRGTR 65
M K+C++ A AL CM ++ CM G +L ECL+ E+ C R AYF CKR Q+DMR RIRG +
Sbjct: 1 MGKACRDMAEALRDCMCEKECMSDGTKTLKECLRMEEFRHECKEYRLAYFECKRGQIDMRQRIRGPK 67
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|635367645|emb|CCI44162.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 59.3066 bits (142), Expect = 1.180e-8 Identity = 34/62 (54.84%), Postives = 37/62 (59.68%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCMKTGG-SLTECLKSED-VDACSVQRNAYFLCKRSQLDMRTR 60
M KSC + A AL CM QQ CM TG +L ECL + C R AYF CKR QLDMRTR
Sbjct: 260 MGKSCHDMALALRDCMIQQECMNTGERTLKECLHERQYANECHAYRVAYFECKRGQLDMRTR 321
BLAST of EWM23290.1 vs. NCBI_GenBank
Match: gi|698818839|ref|XP_009842448.1| (hypothetical protein H257_15879 [Aphanomyces astaci] >gi|574102599|gb|ETV68149.1| hypothetical protein H257_15879 [Aphanomyces astaci]) HSP 1 Score: 55.4546 bits (132), Expect = 1.216e-8 Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0
Query: 1 MPKSCKEAAYALLACMQQQPCMKTG-GSLTECLKSEDV-DACSVQRNAYFLCKRSQLDMRTRIRGTR 65
M K+C++ A AL CM ++ CM G +L ECL++++ C R AYF CKR Q+DMR RIRG +
Sbjct: 1 MGKACRDMAEALRDCMCEKECMSDGTKTLKECLRAKEFRHECKEYRLAYFECKRGQVDMRQRIRGPK 67 The following BLAST results are available for this feature:
BLAST of EWM23290.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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