EWM23326.1, cds7345 (CDS) Nannochloropsis gaditana

Overview
NameEWM23326.1
Unique Namecds7345
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:417879..419921 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23326.1
Productlipid transfer protein 5
Orig transcript idgnl|cribi|Naga_100053g17.5066.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:417879..419921 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
IPR002913START_lipid-bd_dom
Homology
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|585104333|gb|EWM23326.1| (lipid transfer protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 1405.96 bits (3638), Expect = 0.000e+0
Identity = 680/680 (100.00%), Postives = 680/680 (100.00%), Query Frame = 0
Query:    1 MAPLTPYSLLKGPSNWRSKSMLLHLAILFLHHSCATADSVSPKSNRVWCGRSRTNSTWTPIPPVPMGRLAVFFFPERQKGKDNERSIKAIKMRSNNTGDAKVKPAVAMKSPSLTDVPLWASNHPSSSVSSLPVTDRTPPAHLNRTPPTADNAGVRSGWTVPRRWVGLLVDEWQFRVESLDSYRRVVRSRLDDSLTRFQTHYEAASRDVRRDMDKQLAKASALQEDYMERIAQQQQRLAELTRSELRSRQQGFNQSLEQFKRQYDDTWGRFSGTVRKLGPFTKAEVAEQQRRLDETFQQFMTQYLNSTAEVRGYIDRMMHISSDVFPRLSMEDDQVRGLVQRLREEEVAKLARLGKAGVRVERARLEGVVERLREQQERMLRHWSHQRGELDATLKRVMEQLLNFNRLYDDLIARKESNLYADSLNDKVLRRVLECLDQGEADGWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFAPPAIVNKVTSWGPPTFFREVEAAARTTHKIPAPMRVKDAAPSPESPATASTAPSRTSMPNRVSRPPPLLPSERARRGM 680
            MAPLTPYSLLKGPSNWRSKSMLLHLAILFLHHSCATADSVSPKSNRVWCGRSRTNSTWTPIPPVPMGRLAVFFFPERQKGKDNERSIKAIKMRSNNTGDAKVKPAVAMKSPSLTDVPLWASNHPSSSVSSLPVTDRTPPAHLNRTPPTADNAGVRSGWTVPRRWVGLLVDEWQFRVESLDSYRRVVRSRLDDSLTRFQTHYEAASRDVRRDMDKQLAKASALQEDYMERIAQQQQRLAELTRSELRSRQQGFNQSLEQFKRQYDDTWGRFSGTVRKLGPFTKAEVAEQQRRLDETFQQFMTQYLNSTAEVRGYIDRMMHISSDVFPRLSMEDDQVRGLVQRLREEEVAKLARLGKAGVRVERARLEGVVERLREQQERMLRHWSHQRGELDATLKRVMEQLLNFNRLYDDLIARKESNLYADSLNDKVLRRVLECLDQGEADGWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFAPPAIVNKVTSWGPPTFFREVEAAARTTHKIPAPMRVKDAAPSPESPATASTAPSRTSMPNRVSRPPPLLPSERARRGM
Sbjct:    1 MAPLTPYSLLKGPSNWRSKSMLLHLAILFLHHSCATADSVSPKSNRVWCGRSRTNSTWTPIPPVPMGRLAVFFFPERQKGKDNERSIKAIKMRSNNTGDAKVKPAVAMKSPSLTDVPLWASNHPSSSVSSLPVTDRTPPAHLNRTPPTADNAGVRSGWTVPRRWVGLLVDEWQFRVESLDSYRRVVRSRLDDSLTRFQTHYEAASRDVRRDMDKQLAKASALQEDYMERIAQQQQRLAELTRSELRSRQQGFNQSLEQFKRQYDDTWGRFSGTVRKLGPFTKAEVAEQQRRLDETFQQFMTQYLNSTAEVRGYIDRMMHISSDVFPRLSMEDDQVRGLVQRLREEEVAKLARLGKAGVRVERARLEGVVERLREQQERMLRHWSHQRGELDATLKRVMEQLLNFNRLYDDLIARKESNLYADSLNDKVLRRVLECLDQGEADGWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFAPPAIVNKVTSWGPPTFFREVEAAARTTHKIPAPMRVKDAAPSPESPATASTAPSRTSMPNRVSRPPPLLPSERARRGM 680          
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|298712865|emb|CBJ33383.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 202.986 bits (515), Expect = 2.574e-53
Identity = 109/267 (40.82%), Postives = 166/267 (62.17%), Query Frame = 0
Query:  364 RLEGVVERLREQQERMLRHWSHQRGELDATLKRVMEQLLNFNRLYDDLIARKESNLYADSLNDKVLRRVLE-CLDQGEADGWE-LVSDAKG-VTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASP-PMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFAPPAIVNKVTSWGPPTFFREVEAAA 626
            +++GV E   E+Q  +    + ++ ++   ++ V        +LYD+ +  K++ +     N+   RR LE  L+  E  GWE +VS   G ++V RK +    G  SK+ CI+A  ++    + I  +   + RV EYNK++ EGRDLE ++E+TKVVWA+SP P+ F KPRDF TVVH R+L+DG+++VVNRG +HPEAP + +YVR E+++ AN+I+P P   +   FT++TQVDPGG AP  IVNK+++  P  F   VE AA
Sbjct:  269 QIQGVREEWFERQAVLREQLTRRQQDIAERMRAVTIDSKIMAKLYDEFLMGKKAKIDTSVANEDSFRRALELILEDTEEGGWERVVSTRNGALSVERKFIGKNSGG-SKFACIRAWCSMDVPAEAIAEMMESSERVKEYNKWFLEGRDLELLDENTKVVWASSPSPLPFVKPRDFVTVVHVRRLEDGSIIVVNRGYKHPEAPPSTEYVRGEVILAANVIRPDPKDRNRTQFTLLTQVDPGGIAPAWIVNKISAHDPVDFLERVETAA 534          
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|299469624|emb|CBN76478.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 162.925 bits (411), Expect = 9.510e-40
Identity = 96/231 (41.56%), Postives = 125/231 (54.11%), Query Frame = 0
Query:  425 NDKVLRRVLECLDQGEADGWELVSDAKGVTVHRKNLPSM----------------DGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFA----PPAIVNKVTSWGPPTFFREVEAAARTTHKIPAP 635
            ND  +  VL  +   E+DGWE V++  GV V RK +P                  +G  +K+ C+KA GTL A   D+  LF DN RV EYN    E RDLE +++ TKV WA +P    FK RDF T VHYR L+DGT++V+NR  EHP A R  KYVRAEIL+  NI++P    P    F  VT ++PGG A       IVNK+ +  P      +E   R+ +  P P
Sbjct:  251 NDASVEAVLAVI---ESDGWERVTEKSGVVVVRKFVPPPPKAPSSSSSSSRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALE---RSANSAPVP 475          
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|299472189|emb|CBN79692.2| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 164.081 bits (414), Expect = 1.544e-39
Identity = 77/163 (47.24%), Postives = 108/163 (66.26%), Query Frame = 0
Query:  469 KYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFAP----PAIVNKVTSWGPPTFFREVEAAAR 627
            ++ C+KAS  L+  P+ +  LFADN+RV EYN+   E +DLE +++ +K+ WAAS  M  FK RDFCT+VH+R L DGT+  V++  EHP APRT +YVR+EIL+  N ++PVPG P    F +VT V+PGG A       +VN + +  P TF R +E AA+
Sbjct:  400 QFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAK 562          
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|551656396|ref|XP_005830971.1| (hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712] >gi|428175099|gb|EKX43991.1| hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712])

HSP 1 Score: 149.828 bits (377), Expect = 1.143e-35
Identity = 79/209 (37.80%), Postives = 112/209 (53.59%), Query Frame = 0
Query:  422 DSLNDKVLRRVLECLDQGEADGWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFA----PPAIVNKVTSWGPPTFFREVEAAA 626
            +  N  +L R+   L     DGWE V    GV V+RK +  +     K+ C+KA G + A   DI  L  D+ RV EYN+  A+ RDL A++  TKV WAAS   F FKPRDF T VH  +L DGT V+++R  +         YVR E+L+  N+++P P  P+   FT +  ++PGG A       I N++   GP +F R++E   
Sbjct:  205 EGTNKMLLGRLFTVL---AGDGWEHVLHQDGVDVYRKRIVDLYQGGEKFYCVKAVGVIDAKAADIYELLKDSARVDEYNEECAQVRDLSALSSDTKVTWAASKTYFPFKPRDFVTRVHNTQLNDGTYVIMSRSEDVDFTDGGADYVRTEVLLAGNVMRPCPDDPNKTEFTTIAHINPGGAADTPLGAQITNRICIHGPVSFIRKIETVC 410          
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|551655476|ref|XP_005830512.1| (hypothetical protein GUITHDRAFT_110336 [Guillardia theta CCMP2712] >gi|428174638|gb|EKX43532.1| hypothetical protein GUITHDRAFT_110336 [Guillardia theta CCMP2712])

HSP 1 Score: 140.584 bits (353), Expect = 1.523e-31
Identity = 78/224 (34.82%), Postives = 127/224 (56.70%), Query Frame = 0
Query:  424 LNDKVLRRVLECLDQGEADGWELVSDAKGVTVHRKNLPS--------MDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASPPMFFFKP--RDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFAP----PAIVNKVTSWGPPTFFREVEAAARTTHKIP 633
            +ND ++  V   LD  +   W++VS   G+ + RK LP+        +D + SK+ C+KA   + A  + +  LF DN+RV EYN++  E RDLE ++E+TK+  + S      +P  RDF T VHYR + +   +VVNRG EHP A +   Y R E+ +GANI++ +   P+  +FT++T V+PGG A       + N++++  P  F +++  AA    ++P
Sbjct:  308 VNDNLVEAVETLLDDKD---WQMVSADAGINIWRKYLPADMVVAGKKID-KASKFACVKAQAVIDAPLEKVYDLFVDNSRVREYNEYCKEVRDLEWLDENTKITHSLSG-----RPWSRDFVTRVHYRSIGEDVKMVVNRGEEHPLATKQAGYTRMEMSLGANIMRRLDSDPNKTLFTLITHVNPGGLATTQFGAMLTNRLSTESPRQFLQKLNEAAAAGQQLP 522          
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|298706175|emb|CBJ49103.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.02 bits (310), Expect = 1.921e-28
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 0
Query:  443 GWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGR-DLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQD--GTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKP 585
            GWE V+   GVTV +K  P  D    KY C+KA G +  S  +++S+  D+TRV EYN+ Y++GR D+E +  HTK+VW  + P    K  DFCT++H + L D  G+ +++ R  EHP+AP  D +VR+EIL+G  I++P  G P
Sbjct:   58 GWEEVAHRGGVTVWKKYFPK-DEYGYKYPCVKARGIIEGSAAEVMSMIVDSTRVLEYNR-YSKGRTDIEHLGPHTKIVWNKAQPPLSKKLHDFCTLMHMQPLDDEEGSFMLITRATEHPKAPLLDGHVRSEILLGVTILRPAKGDP 201          
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|585110441|gb|EWM28098.1| (Lipid-binding START [Nannochloropsis gaditana])

HSP 1 Score: 129.028 bits (323), Expect = 2.437e-28
Identity = 69/195 (35.38%), Postives = 107/195 (54.87%), Query Frame = 0
Query:  440 EADGWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRD-LEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFAPPAIVNKVTSWGPPTFFREVEAAARTTHKIP 633
            E  GW  VSD +   + R+NL + D    +Y C+K S  L ASP+ ++ L  D+ RV EYNK Y++GRD +  +  HTK+VW  + P    K  +FCT++H  +  DG+ V++ +  +HPE PR+ ++ R+EI++G   ++P P  P+ A  T ++ V   G  PP I  K +  G   F   +  A     K P
Sbjct:  222 EGGGWHPVSDKEDTKIWRRNL-AEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNK-YSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGI-PPFIAEKFSVRGVVDFAESLRKALHLERKGP 413          
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|551635647|ref|XP_005820655.1| (hypothetical protein GUITHDRAFT_81208 [Guillardia theta CCMP2712] >gi|428164657|gb|EKX33675.1| hypothetical protein GUITHDRAFT_81208 [Guillardia theta CCMP2712])

HSP 1 Score: 120.553 bits (301), Expect = 1.374e-27
Identity = 65/195 (33.33%), Postives = 103/195 (52.82%), Query Frame = 0
Query:  440 EADGWELVSDAKGVTVHRKNLPS-------MDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFA----PPAIVNKVTSWGPPTFFREVE 623
            E+DGWE VS    + V R+ LP+         G  SK+ C+KA+  + A  + +  LF DN R  EYN++  E  DLE ++E TK+    +   +    R+F T VHYR + +   ++VNR  +HP A     Y R  + +GAN+++ V   P    FT++T VDPGG A       + N++++  P  F  +++
Sbjct:    2 ESDGWEEVSSEGNIKVWRRFLPADLEIAGLKVGSASKFACVKATAVIDAPLEKVFELFTDNARAHEYNEYCKEILDLEWLSEDTKITQTRTGRPW---SREFVTRVHYRSIGEDAKLIVNRAEDHPLAKHAPGYTRMNMPLGANLLKKVSSDPSKTEFTLITHVDPGGLANTKFGAMVTNRLSTESPRQFLEKLQ 193          
BLAST of EWM23326.1 vs. NCBI_GenBank
Match: gi|585099982|gb|EWM20404.1| (START-like domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 112.849 bits (281), Expect = 9.420e-25
Identity = 47/93 (50.54%), Postives = 70/93 (75.27%), Query Frame = 0
Query:  420 YADSLNDKVLRRVLECLDQGEADGWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAI 512
            + ++ N+ +L RVL  +++ EA GWE V+  +G+TVHRK +P+++G +SK+CC++ASG L AS  D+  LF  NTRV EYNK++AEGRDLE +
Sbjct:  122 HVEAANEHMLSRVLSVMNETEAHGWEHVTHRRGITVHRKFMPALNGVMSKFCCVRASGVLEASCLDVADLFEGNTRVAEYNKYFAEGRDLEHV 214          
The following BLAST results are available for this feature:
BLAST of EWM23326.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104333|gb|EWM23326.1|0.000e+0100.00lipid transfer protein 5 [Nannochloropsis gaditana... [more]
gi|298712865|emb|CBJ33383.1|2.574e-5340.82conserved unknown protein [Ectocarpus siliculosus][more]
gi|299469624|emb|CBN76478.1|9.510e-4041.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|299472189|emb|CBN79692.2|1.544e-3947.24conserved unknown protein (Partial), partial [Ecto... [more]
gi|551656396|ref|XP_005830971.1|1.143e-3537.80hypothetical protein GUITHDRAFT_153123 [Guillardia... [more]
gi|551655476|ref|XP_005830512.1|1.523e-3134.82hypothetical protein GUITHDRAFT_110336 [Guillardia... [more]
gi|298706175|emb|CBJ49103.1|1.921e-2843.15conserved unknown protein [Ectocarpus siliculosus][more]
gi|585110441|gb|EWM28098.1|2.437e-2835.38Lipid-binding START [Nannochloropsis gaditana][more]
gi|551635647|ref|XP_005820655.1|1.374e-2733.33hypothetical protein GUITHDRAFT_81208 [Guillardia ... [more]
gi|585099982|gb|EWM20404.1|9.420e-2550.54START-like domain protein, partial [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7362rna7362Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications