EWM29939.1, cds732 (CDS) Nannochloropsis gaditana

Overview
NameEWM29939.1
Unique Namecds732
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:280643..281449 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29939.1
Productprotein of unknown function DUF862, eukaryotic
Orig transcript idgnl|cribi|Naga_100510g2.4378.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:280643..281449 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008580PPPDE_dom
Homology
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|585112526|gb|EWM29939.1| (protein of unknown function DUF862, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MLPSLKLCGLSSFVLLIINKPIAAFLPPIPFSATATSPTSARVTLSSSSALQDDSFPEQGAFQHNKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEAEEGRRGVEEGSQPAA 268
            MLPSLKLCGLSSFVLLIINKPIAAFLPPIPFSATATSPTSARVTLSSSSALQDDSFPEQGAFQHNKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEAEEGRRGVEEGSQPAA
Sbjct:    1 MLPSLKLCGLSSFVLLIINKPIAAFLPPIPFSATATSPTSARVTLSSSSALQDDSFPEQGAFQHNKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEAEEGRRGVEEGSQPAA 268          
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|553190298|ref|XP_005855163.1| (hypothetical protein NGA_2079000, partial [Nannochloropsis gaditana CCMP526] >gi|422293897|gb|EKU21197.1| hypothetical protein NGA_2079000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 525.398 bits (1352), Expect = 0.000e+0
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
Query:    1 MLPSLKLCGLSSFVLLIINKPIAAFLPPIPFSATATSPTSARVTLSSSSALQDDSFPEQGAFQHNKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEA 253
            MLPSLKLCGLSSFVLLIINKPIAAFLPPIPFSATATSPTSARVTLSSSSALQDDSFPEQGAFQHNKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEA
Sbjct:    5 MLPSLKLCGLSSFVLLIINKPIAAFLPPIPFSATATSPTSARVTLSSSSALQDDSFPEQGAFQHNKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEA 257          
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|873236566|emb|CEL99225.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 164.466 bits (415), Expect = 3.125e-47
Identity = 76/166 (45.78%), Postives = 110/166 (66.27%), Query Frame = 0
Query:   85 LLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVE---MPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAER 247
            L+RK +  IWH G+ V+G+EYWFST IESKD+  TE+AFGMAP   +++G T ++++ FE +LE EL+ RF++D Y+ FT+NCNH   +AL FL     E   +P YILE S+  LD +   QA LT+ IA +V+R++M+ W  +NR+KE+  R  A   +    R
Sbjct:    2 LVRKNIETIWHAGLVVYGREYWFSTHIESKDIQHTESAFGMAPTHVHDMGATTIDQRVFEDYLERELAPRFSLDRYETFTNNCNHMIDEALTFLTAPSAEPQRLPYYILEQSETILDNVSDLQADLTRKIATRVSRLIMVGWAKSNRAKEERERGWASESRNFGRR 167          
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|551624281|ref|XP_005792379.1| (hypothetical protein EMIHUDRAFT_417423 [Emiliania huxleyi CCMP1516] >gi|485646520|gb|EOD39950.1| hypothetical protein EMIHUDRAFT_417423 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 108.612 bits (270), Expect = 2.930e-23
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 0
Query:   67 VELRVYDI-GGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQAL 206
            V L VYD+ GG    M  ALL  ++  I H G+GVFG+EY+FS  ++ + LG      G+  H T ELG+T++ R+ F+ + +E  ++RF+ D Y +  +NCNHFS +   FLLG G+  P +IL+   RA+ A P GQ L
Sbjct:  259 VVLYVYDLSGGAARGMAQALLGIDVEIIPHTGVGVFGREYYFSGGVQREPLGAFTAHSGLPVHQTLELGRTSLPREVFDEYCDEVGAARFSADAYSLLENNCNHFSNECAQFLLGVGI--PQHILD-LPRAVLASPMGQML 396          
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|195634915|gb|ACG36926.1| (thioredoxin [Zea mays])

HSP 1 Score: 101.293 bits (251), Expect = 6.168e-22
Identity = 68/210 (32.38%), Postives = 103/210 (49.05%), Query Frame = 0
Query:   66 KVELRVYDI-GGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDA------LPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEAEEGRRGVEEGSQPAA 268
            KV L VYD+  G    + ++ L K + AIWH G+ V+G EY+F   I+S   G T   +G  P    ELG T + R+ FE +L + ++ R+  +TY++ THNCN+FS +   FL+G G  +P YIL      + +      +P  Q L +   +N   +        A+ S    A    R+  A AE+ S E     ++   E   PAA
Sbjct:    7 KVTLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYYFGGGIQSSPAGTT--PYGR-PLRVVELGVTHIPREVFEDYLRD-IAPRYTAETYRLLTHNCNNFSHEVAQFLVGTGAGVPDYILNLPAEVMSSPMGPLIMPMIQNLESTLRSNVAPQTTQFVPTPASVSAPTEAPASERKAPAPAEKASKEAPAPAKK---EAPTPAA 209          
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|1214357736|ref|NP_001149830.2| (uncharacterized protein LOC100283457 [Zea mays] >gi|1142712142|gb|AQK76066.1| Thioredoxin [Zea mays])

HSP 1 Score: 101.293 bits (251), Expect = 6.617e-22
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 0
Query:   66 KVELRVYDI-GGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDA------LPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEAEEGRRGVEEGSQPAA 268
            KV L VYD+  G    + ++ L K + AIWH G+ V+G EY+F   I+S   G T   +G  P    ELG T + R+ FE +L + ++ R+  +TY++ THNCN+FS +   FL+G G  +P YIL      + +      +P  Q L +   +N   +        A+ S    A    R+  A AE+ S +EA       +E   PAA
Sbjct:    7 KVTLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYYFGGGIQSSPAGTTP--YGR-PLRVVELGVTHIPREVFEDYLRD-IAPRYTAETYRLLTHNCNNFSHEVAQFLVGTGAGVPDYILNLPAEVMSSPMGPLIMPMIQNLESTLRSNVAPQTTQFVPTPASVSAPTEAPASERKAPAPAEKAS-KEAPTPAPAKKEAPTPAA 211          
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|1179558322|ref|XP_020699113.1| (desumoylating isopeptidase 1 [Dendrobium catenatum])

HSP 1 Score: 101.293 bits (251), Expect = 8.153e-22
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 0
Query:   66 KVELRVYDIGGKYTPMMS-ALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILE------NSDRALDALPKGQALLT 208
            KV+L +YD+       +S A L K + AIWH GI V+G EY+F   I+   +G   T +G+ P  + ELG T V ++ FE +L+E +SSR+  +TY++ +HNCN+FS +   FL+G  +  P YIL+      NS  A   LP  Q L T
Sbjct:    7 KVKLNIYDLSQGLARQLSVAFLGKSIEAIWHTGIVVYGNEYYFGAGIQHDPVG--RTPYGV-PLRSVELGVTHVPKEIFEDYLKE-ISSRYTAETYRLLSHNCNNFSNEVAQFLVGTSI--PDYILQLPNDVMNSPMAPLILPMIQQLET 150          
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|685267526|ref|XP_009124525.1| (PREDICTED: desumoylating isopeptidase 1-like [Brassica rapa])

HSP 1 Score: 100.138 bits (248), Expect = 1.015e-21
Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = 0
Query:   65 NKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIAN 213
            +KV L VYD+    + + ++LL K +  +WH GI V+G EY+F   I+    G T   +G AP  T E+G+T V +  FE +LEE +S R+  ++Y + THNCN+FS +   FL+G+G+  P YIL+     +++ P G  LL   I N
Sbjct:    6 HKVTLNVYDL----SQLSASLLGKVIEGVWHTGIVVYGNEYFFGGGIQHLPAGTT--PYG-APLRTVEMGETHVPKDVFEMYLEE-ISPRYTAESYNLITHNCNNFSNEVSQFLVGKGI--PDYILQLPSEVMNS-PMG-GLLMPMIQN 142          
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|923806596|ref|XP_013689312.1| (PREDICTED: desumoylating isopeptidase 1-like [Brassica napus])

HSP 1 Score: 97.0561 bits (240), Expect = 2.095e-21
Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = 0
Query:   65 NKVELRVYDIGGKYTPMMSA-LLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDA 199
            +KV L VYD+       +SA  L K +  +WH GI V+G EY+F   I+    G T      AP  T ELG+T V +  FE +LEE +S R+  ++Y +  HNCN+FS +   FL+G+G+  P YILE  +  +++
Sbjct:    6 HKVTLNVYDLSRGLARQLSASFLGKVIEGVWHTGIVVYGNEYFFGGGIQHLPAGTTPYG---APLRTVELGETHVPKDVFEMYLEE-ISPRYTAESYNLLAHNCNNFSNEVAQFLVGKGI--PNYILELPNEVMNS 135          
BLAST of EWM29939.1 vs. NCBI_GenBank
Match: gi|242066952|ref|XP_002454765.1| (desumoylating isopeptidase 1 [Sorghum bicolor] >gi|241934596|gb|EES07741.1| hypothetical protein SORBI_3004G341800 [Sorghum bicolor])

HSP 1 Score: 99.7525 bits (247), Expect = 2.543e-21
Identity = 52/126 (41.27%), Postives = 76/126 (60.32%), Query Frame = 0
Query:   66 KVELRVYDI-GGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYIL 190
            KV L VYD+  G    + ++ L K + AIWH G+ V+G EY+F   I+S   G T   +G  P  T ELG T + R+ FE +L + ++ R+  +TY++ THNCN+FS +   FL+G G  +P YIL
Sbjct:    7 KVTLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYYFGGGIQSSPAGTT--PYGR-PLRTVELGVTHIPREVFEDYLRD-IAPRYTAETYRLLTHNCNNFSHEVAQFLVGTGAGVPDYIL 128          
The following BLAST results are available for this feature:
BLAST of EWM29939.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112526|gb|EWM29939.1|0.000e+0100.00protein of unknown function DUF862, eukaryotic [Na... [more]
gi|553190298|ref|XP_005855163.1|0.000e+0100.00hypothetical protein NGA_2079000, partial [Nannoch... [more]
gi|873236566|emb|CEL99225.1|3.125e-4745.78unnamed protein product [Vitrella brassicaformis C... [more]
gi|551624281|ref|XP_005792379.1|2.930e-2341.84hypothetical protein EMIHUDRAFT_417423 [Emiliania ... [more]
gi|195634915|gb|ACG36926.1|6.168e-2232.38thioredoxin [Zea mays][more]
gi|1214357736|ref|NP_001149830.2|6.617e-2232.86uncharacterized protein LOC100283457 [Zea mays] >g... [more]
gi|1179558322|ref|XP_020699113.1|8.153e-2240.00desumoylating isopeptidase 1 [Dendrobium catenatum... [more]
gi|685267526|ref|XP_009124525.1|1.015e-2138.93PREDICTED: desumoylating isopeptidase 1-like [Bras... [more]
gi|923806596|ref|XP_013689312.1|2.095e-2138.97PREDICTED: desumoylating isopeptidase 1-like [Bras... [more]
gi|242066952|ref|XP_002454765.1|2.543e-2141.27desumoylating isopeptidase 1 [Sorghum bicolor] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna732rna732Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications