EWM23373.1, cds7317 (CDS) Nannochloropsis gaditana

Overview
NameEWM23373.1
Unique Namecds7317
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:351565..351579 +
Alignment locationCM002471.1:351713..351888 +
Alignment locationCM002471.1:352262..352321 +
Alignment locationCM002471.1:352371..353112 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23373.1
Productsingle-stranded dna-binding protein
Orig transcript idgnl|cribi|Naga_100057g16.3932.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:351565..351579 +
CM002471.1supercontigCM002471.1:351713..351888 +
CM002471.1supercontigCM002471.1:352262..352321 +
CM002471.1supercontigCM002471.1:352371..353112 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003697single-stranded DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR011344ssDNA-bd
IPR000424Primosome_PriB/ssb
Homology
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|585104381|gb|EWM23373.1| (single-stranded dna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MSLNLHQPEAGFQQDQRSHGTTTFIWQQPELINVCVLKVLLFTRLGGEQNLSISIMVSAYTVFSHHCPCFPRLHPAQPIQPMPLARCPPGPKRRDALSSLRPQEMDMDAGGPGAGSDLSILNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQGGGWDGKGAGSREEQSSMVMPDYLASGMDGGQEQSPYSRNGAGAPSPVASPFTKKGSYGHGGGTGGGGQFEVDEYEADTDIPF 330
            MSLNLHQPEAGFQQDQRSHGTTTFIWQQPELINVCVLKVLLFTRLGGEQNLSISIMVSAYTVFSHHCPCFPRLHPAQPIQPMPLARCPPGPKRRDALSSLRPQEMDMDAGGPGAGSDLSILNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQGGGWDGKGAGSREEQSSMVMPDYLASGMDGGQEQSPYSRNGAGAPSPVASPFTKKGSYGHGGGTGGGGQFEVDEYEADTDIPF
Sbjct:    1 MSLNLHQPEAGFQQDQRSHGTTTFIWQQPELINVCVLKVLLFTRLGGEQNLSISIMVSAYTVFSHHCPCFPRLHPAQPIQPMPLARCPPGPKRRDALSSLRPQEMDMDAGGPGAGSDLSILNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQGGGWDGKGAGSREEQSSMVMPDYLASGMDGGQEQSPYSRNGAGAPSPVASPFTKKGSYGHGGGTGGGGQFEVDEYEADTDIPF 330          
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|397615435|gb|EJK63431.1| (hypothetical protein THAOC_15908 [Thalassiosira oceanica])

HSP 1 Score: 93.2041 bits (230), Expect = 9.537e-19
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 0
Query:  121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPE-VDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRY-GQNRNELKVRIRRIEVLQS 231
            LN V LVGR+G+EP  KY + G  VL++S+A  R+  P  + +  +    E  DW  LE WGR AE +A    KG+R+ + G LV +SW+D+  G  R + K+ +R+++VL+S
Sbjct:   80 LNSVTLVGRVGNEPEPKYFDDGKVVLNLSLACKRKYHPLERKVREIKSGEEETDWFALEIWGRDAEYVANYVDKGARMGITGSLVQDSWIDKVSGMKRRKPKIAVRQVDVLES 192          
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|299472377|emb|CBN77565.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.3597 bits (233), Expect = 1.252e-18
Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 0
Query:  121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSP-GRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQ 235
            LN V L G LG +P  KY +SG  VL++S+AV RE  P  R+ +  V    E DW +LE W R AE  A   +KG RV V G L   SW+DR G +R  +K+ ++ +EVL S   Q
Sbjct:   49 LNMVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPLERKALGIVQGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTGGLSLQSWIDREGNDRTTVKILVQNLEVLDSRAEQ 164          
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|1214779707|ref|WP_088890861.1| (single-stranded DNA-binding protein [Leptolyngbya ohadii])

HSP 1 Score: 88.9669 bits (219), Expect = 3.133e-18
Identity = 55/123 (44.72%), Postives = 74/123 (60.16%), Query Frame = 0
Query:  121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGG 242
            LN V LVGR G +P VKY ESG+ V  +++AV+R     R+N      + E DW  LEAWG+TA+ MA   RKGS + V G L  + W DR  G +R++  VR+ R+E+L S R  T+   GG
Sbjct:    3 LNTVTLVGRAGRDPEVKYFESGSVVCKLTLAVDRR----RKN------SDEPDWFELEAWGKTAQVMADYVRKGSLIGVSGALKFDYWQDRGTGADRSKPIVRVDRLELLGSKR-DTEAAAGG 114          
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|493562966|ref|WP_006516355.1| (single-stranded DNA-binding protein [Leptolyngbya sp. PCC 7375] >gi|425761114|gb|EKV01967.1| single stranded DNA-binding protein [Leptolyngbya sp. PCC 7375])

HSP 1 Score: 87.8113 bits (216), Expect = 7.120e-18
Identity = 56/125 (44.80%), Postives = 68/125 (54.40%), Query Frame = 0
Query:  121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEY 244
            LN V LVGR G +P V+Y ESGN +   ++AVNR T    Q        P  DW  LE WGR AE  A   +KGS V VVG L  +SW DR  G  R+   +R+ R+E+L S R     PM G Y
Sbjct:    3 LNVVNLVGRAGRDPEVRYFESGNVLCKFTIAVNRRTRNSDQ--------P--DWFNLELWGRNAEVAANYVKKGSLVGVVGALKLDSWQDRATGAQRSSPVIRVERLELLGSKRDNA-APMSGNY 116          
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|497241717|ref|WP_009555955.1| (single-stranded DNA-binding protein [Oscillatoriales cyanobacterium JSC-12] >gi|410711535|gb|EKQ69041.1| single stranded DNA-binding protein [Oscillatoriales cyanobacterium JSC-12])

HSP 1 Score: 87.8113 bits (216), Expect = 8.931e-18
Identity = 53/128 (41.41%), Postives = 73/128 (57.03%), Query Frame = 0
Query:  121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQ 247
            LN V LVGR+G +P VKY ESG+ V ++++AV R++    Q        P  DW  LE WG+TAE  A   RKGS + V G L  ++W DR  G NR++  +R+ R+E+L S R       GG Y  +
Sbjct:    3 LNVVTLVGRVGGDPDVKYFESGSVVCNMTLAVKRQSRNSDQ--------P--DWFNLELWGQTAEVAANYVRKGSLIGVTGSLKLDTWKDRATGANRSKPVIRVDRMELLGSKRDNEAEISGGGYSDE 120          
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|503089444|ref|WP_013324288.1| (single-stranded DNA-binding protein [Cyanothece sp. PCC 7822] >gi|306984344|gb|ADN16225.1| single-strand binding protein [Cyanothece sp. PCC 7822])

HSP 1 Score: 87.4261 bits (215), Expect = 1.237e-17
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 0
Query:  121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVD-RYGQNRNELKVRIRRIEVLQSGRSQTQPPMGG 242
            LN V LVGR+G +P +K+  SG+ + ++++AVNR TS          K+ E DW  LE WG+TAE  A   RKGS + V G L   +W D   G NR++  +R+ ++++L S R   Q  + G
Sbjct:    3 LNVVHLVGRVGRDPEIKFFTSGSSLCTLTLAVNRPTS----------KSDEPDWFNLEIWGKTAEVAANYVRKGSLIGVKGSLKIETWTDANTGANRSKPVIRVDKLDLLGSKRDNDQNALSG 115          
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|553738704|ref|WP_023072913.1| (single-stranded DNA-binding protein [Leptolyngbya sp. Heron Island J] >gi|553084540|gb|ESA36207.1| single-stranded dna-binding protein [Leptolyngbya sp. Heron Island J])

HSP 1 Score: 86.6557 bits (213), Expect = 2.099e-17
Identity = 53/125 (42.40%), Postives = 68/125 (54.40%), Query Frame = 0
Query:  121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEY 244
            LN V LVGR G +P V+Y ESGN +   ++AVNR T            + + DW  LE WGR AE  A   RKGS V +VG L  +SW DR  G  R+   +R+ R+++L S R     PM G Y
Sbjct:    3 LNVVNLVGRAGRDPEVRYFESGNVLCKFTIAVNRRTR----------NSDQPDWFNLELWGRNAEVAANYVRKGSLVGIVGALKLDSWQDRTTGAQRSSPVIRVERLDLLGSKRDNA-APMQGNY 116          
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|941166479|ref|WP_055074603.1| (single-stranded DNA-binding protein [Pseudanabaena sp. 'Roaring Creek'])

HSP 1 Score: 86.2705 bits (212), Expect = 3.286e-17
Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = 0
Query:  121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEY 244
            LN+V LVGR G +P VKY ESG+ V   ++A+NR TS    N +  P     DW  LEAWG+TAE  +   +KGS V VVG L  + W DR  G+ R +  + I R+E+L S +        G Y
Sbjct:    3 LNKVHLVGRAGRDPEVKYFESGSVVCKFTVAINRVTS----NRDEPP-----DWFDLEAWGKTAEIASNYVKKGSLVGVVGSLKFDRWNDRSTGEERQKSVILIDRLELLGSRKDNEAASNSGSY 118          
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|1119702810|ref|WP_072620902.1| (single-stranded DNA-binding protein [Spirulina major])

HSP 1 Score: 85.5001 bits (210), Expect = 5.121e-17
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 0
Query:  121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVD-RYGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQGG 249
            LN V LVGR G++P V+Y ESG+ +  +++AVNR TS          K  + DW  LE WG+TAE  A   RKG  + + G LV  +W D R G  R++  +R+ R+++L S R       G   Y  GG
Sbjct:    3 LNVVNLVGRAGADPDVRYFESGSVLCKLTLAVNRPTS----------KTDQPDWFNLEIWGKTAEVAANYVRKGKLLGIQGELVIETWQDSRTGTERSKPVIRVIRLDLLGSKRDDAAGAAGYTDYGSGG 122          
The following BLAST results are available for this feature:
BLAST of EWM23373.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104381|gb|EWM23373.1|0.000e+0100.00single-stranded dna-binding protein [Nannochlorops... [more]
gi|397615435|gb|EJK63431.1|9.537e-1940.71hypothetical protein THAOC_15908 [Thalassiosira oc... [more]
gi|299472377|emb|CBN77565.1|1.252e-1843.97conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214779707|ref|WP_088890861.1|3.133e-1844.72single-stranded DNA-binding protein [Leptolyngbya ... [more]
gi|493562966|ref|WP_006516355.1|7.120e-1844.80single-stranded DNA-binding protein [Leptolyngbya ... [more]
gi|497241717|ref|WP_009555955.1|8.931e-1841.41single-stranded DNA-binding protein [Oscillatorial... [more]
gi|503089444|ref|WP_013324288.1|1.237e-1739.02single-stranded DNA-binding protein [Cyanothece sp... [more]
gi|553738704|ref|WP_023072913.1|2.099e-1742.40single-stranded DNA-binding protein [Leptolyngbya ... [more]
gi|941166479|ref|WP_055074603.1|3.286e-1742.40single-stranded DNA-binding protein [Pseudanabaena... [more]
gi|1119702810|ref|WP_072620902.1|5.121e-1739.23single-stranded DNA-binding protein [Spirulina maj... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7334rna7334Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications