EWM23373.1, cds7317 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|585104381|gb|EWM23373.1| (single-stranded dna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0 Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query: 1 MSLNLHQPEAGFQQDQRSHGTTTFIWQQPELINVCVLKVLLFTRLGGEQNLSISIMVSAYTVFSHHCPCFPRLHPAQPIQPMPLARCPPGPKRRDALSSLRPQEMDMDAGGPGAGSDLSILNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQGGGWDGKGAGSREEQSSMVMPDYLASGMDGGQEQSPYSRNGAGAPSPVASPFTKKGSYGHGGGTGGGGQFEVDEYEADTDIPF 330
MSLNLHQPEAGFQQDQRSHGTTTFIWQQPELINVCVLKVLLFTRLGGEQNLSISIMVSAYTVFSHHCPCFPRLHPAQPIQPMPLARCPPGPKRRDALSSLRPQEMDMDAGGPGAGSDLSILNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQGGGWDGKGAGSREEQSSMVMPDYLASGMDGGQEQSPYSRNGAGAPSPVASPFTKKGSYGHGGGTGGGGQFEVDEYEADTDIPF
Sbjct: 1 MSLNLHQPEAGFQQDQRSHGTTTFIWQQPELINVCVLKVLLFTRLGGEQNLSISIMVSAYTVFSHHCPCFPRLHPAQPIQPMPLARCPPGPKRRDALSSLRPQEMDMDAGGPGAGSDLSILNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQGGGWDGKGAGSREEQSSMVMPDYLASGMDGGQEQSPYSRNGAGAPSPVASPFTKKGSYGHGGGTGGGGQFEVDEYEADTDIPF 330
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|397615435|gb|EJK63431.1| (hypothetical protein THAOC_15908 [Thalassiosira oceanica]) HSP 1 Score: 93.2041 bits (230), Expect = 9.537e-19 Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 0
Query: 121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPE-VDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRY-GQNRNELKVRIRRIEVLQS 231
LN V LVGR+G+EP KY + G VL++S+A R+ P + + + E DW LE WGR AE +A KG+R+ + G LV +SW+D+ G R + K+ +R+++VL+S
Sbjct: 80 LNSVTLVGRVGNEPEPKYFDDGKVVLNLSLACKRKYHPLERKVREIKSGEEETDWFALEIWGRDAEYVANYVDKGARMGITGSLVQDSWIDKVSGMKRRKPKIAVRQVDVLES 192
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|299472377|emb|CBN77565.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 94.3597 bits (233), Expect = 1.252e-18 Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 0
Query: 121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSP-GRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQ 235
LN V L G LG +P KY +SG VL++S+AV RE P R+ + V E DW +LE W R AE A +KG RV V G L SW+DR G +R +K+ ++ +EVL S Q
Sbjct: 49 LNMVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPLERKALGIVQGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTGGLSLQSWIDREGNDRTTVKILVQNLEVLDSRAEQ 164
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|1214779707|ref|WP_088890861.1| (single-stranded DNA-binding protein [Leptolyngbya ohadii]) HSP 1 Score: 88.9669 bits (219), Expect = 3.133e-18 Identity = 55/123 (44.72%), Postives = 74/123 (60.16%), Query Frame = 0
Query: 121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGG 242
LN V LVGR G +P VKY ESG+ V +++AV+R R+N + E DW LEAWG+TA+ MA RKGS + V G L + W DR G +R++ VR+ R+E+L S R T+ GG
Sbjct: 3 LNTVTLVGRAGRDPEVKYFESGSVVCKLTLAVDRR----RKN------SDEPDWFELEAWGKTAQVMADYVRKGSLIGVSGALKFDYWQDRGTGADRSKPIVRVDRLELLGSKR-DTEAAAGG 114
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|493562966|ref|WP_006516355.1| (single-stranded DNA-binding protein [Leptolyngbya sp. PCC 7375] >gi|425761114|gb|EKV01967.1| single stranded DNA-binding protein [Leptolyngbya sp. PCC 7375]) HSP 1 Score: 87.8113 bits (216), Expect = 7.120e-18 Identity = 56/125 (44.80%), Postives = 68/125 (54.40%), Query Frame = 0
Query: 121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEY 244
LN V LVGR G +P V+Y ESGN + ++AVNR T Q P DW LE WGR AE A +KGS V VVG L +SW DR G R+ +R+ R+E+L S R PM G Y
Sbjct: 3 LNVVNLVGRAGRDPEVRYFESGNVLCKFTIAVNRRTRNSDQ--------P--DWFNLELWGRNAEVAANYVKKGSLVGVVGALKLDSWQDRATGAQRSSPVIRVERLELLGSKRDNA-APMSGNY 116
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|497241717|ref|WP_009555955.1| (single-stranded DNA-binding protein [Oscillatoriales cyanobacterium JSC-12] >gi|410711535|gb|EKQ69041.1| single stranded DNA-binding protein [Oscillatoriales cyanobacterium JSC-12]) HSP 1 Score: 87.8113 bits (216), Expect = 8.931e-18 Identity = 53/128 (41.41%), Postives = 73/128 (57.03%), Query Frame = 0
Query: 121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQ 247
LN V LVGR+G +P VKY ESG+ V ++++AV R++ Q P DW LE WG+TAE A RKGS + V G L ++W DR G NR++ +R+ R+E+L S R GG Y +
Sbjct: 3 LNVVTLVGRVGGDPDVKYFESGSVVCNMTLAVKRQSRNSDQ--------P--DWFNLELWGQTAEVAANYVRKGSLIGVTGSLKLDTWKDRATGANRSKPVIRVDRMELLGSKRDNEAEISGGGYSDE 120
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|503089444|ref|WP_013324288.1| (single-stranded DNA-binding protein [Cyanothece sp. PCC 7822] >gi|306984344|gb|ADN16225.1| single-strand binding protein [Cyanothece sp. PCC 7822]) HSP 1 Score: 87.4261 bits (215), Expect = 1.237e-17 Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 0
Query: 121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVD-RYGQNRNELKVRIRRIEVLQSGRSQTQPPMGG 242
LN V LVGR+G +P +K+ SG+ + ++++AVNR TS K+ E DW LE WG+TAE A RKGS + V G L +W D G NR++ +R+ ++++L S R Q + G
Sbjct: 3 LNVVHLVGRVGRDPEIKFFTSGSSLCTLTLAVNRPTS----------KSDEPDWFNLEIWGKTAEVAANYVRKGSLIGVKGSLKIETWTDANTGANRSKPVIRVDKLDLLGSKRDNDQNALSG 115
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|553738704|ref|WP_023072913.1| (single-stranded DNA-binding protein [Leptolyngbya sp. Heron Island J] >gi|553084540|gb|ESA36207.1| single-stranded dna-binding protein [Leptolyngbya sp. Heron Island J]) HSP 1 Score: 86.6557 bits (213), Expect = 2.099e-17 Identity = 53/125 (42.40%), Postives = 68/125 (54.40%), Query Frame = 0
Query: 121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEY 244
LN V LVGR G +P V+Y ESGN + ++AVNR T + + DW LE WGR AE A RKGS V +VG L +SW DR G R+ +R+ R+++L S R PM G Y
Sbjct: 3 LNVVNLVGRAGRDPEVRYFESGNVLCKFTIAVNRRTR----------NSDQPDWFNLELWGRNAEVAANYVRKGSLVGIVGALKLDSWQDRTTGAQRSSPVIRVERLDLLGSKRDNA-APMQGNY 116
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|941166479|ref|WP_055074603.1| (single-stranded DNA-binding protein [Pseudanabaena sp. 'Roaring Creek']) HSP 1 Score: 86.2705 bits (212), Expect = 3.286e-17 Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = 0
Query: 121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDR-YGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEY 244
LN+V LVGR G +P VKY ESG+ V ++A+NR TS N + P DW LEAWG+TAE + +KGS V VVG L + W DR G+ R + + I R+E+L S + G Y
Sbjct: 3 LNKVHLVGRAGRDPEVKYFESGSVVCKFTVAINRVTS----NRDEPP-----DWFDLEAWGKTAEIASNYVKKGSLVGVVGSLKFDRWNDRSTGEERQKSVILIDRLELLGSRKDNEAASNSGSY 118
BLAST of EWM23373.1 vs. NCBI_GenBank
Match: gi|1119702810|ref|WP_072620902.1| (single-stranded DNA-binding protein [Spirulina major]) HSP 1 Score: 85.5001 bits (210), Expect = 5.121e-17 Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 0
Query: 121 LNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVD-RYGQNRNELKVRIRRIEVLQSGRSQTQPPMGGEYYQQGG 249
LN V LVGR G++P V+Y ESG+ + +++AVNR TS K + DW LE WG+TAE A RKG + + G LV +W D R G R++ +R+ R+++L S R G Y GG
Sbjct: 3 LNVVNLVGRAGADPDVRYFESGSVLCKLTLAVNRPTS----------KTDQPDWFNLEIWGKTAEVAANYVRKGKLLGIQGELVIETWQDSRTGTERSKPVIRVIRLDLLGSKRDDAAGAAGYTDYGSGG 122 The following BLAST results are available for this feature:
BLAST of EWM23373.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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