EWM23347.1, cds7301 (CDS) Nannochloropsis gaditana

Overview
NameEWM23347.1
Unique Namecds7301
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:315032..315296 +
Alignment locationCM002471.1:315538..317138 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23347.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100057g32.3906.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:315032..315296 +
CM002471.1supercontigCM002471.1:315538..317138 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM23347.1 vs. NCBI_GenBank
Match: gi|585104355|gb|EWM23347.1| (hypothetical protein Naga_100057g32 [Nannochloropsis gaditana])

HSP 1 Score: 1230.31 bits (3182), Expect = 0.000e+0
Identity = 621/621 (100.00%), Postives = 621/621 (100.00%), Query Frame = 0 
Query:    1 MVPWRRHCELIYLTSAKRLCFFALFLLLAWPPLVHADAAAAVNHGSTSGLENKKEAYRSDPAHLIVPTGHDTKYDKVDELTNLLQQKVAALVNAEKAITSLENQLNIASKQLETTAQSLSASDRETSRLTQEVKELTHKLDAAEASAVAATAQATVAVDTATAAAKKETAAWIARAEKAEAGMDVAVTEATRLKAETQALQASVAAGKGLEGQWSEEKARMEKELAIVREEKDQAVAGLERAAAEAKARVEEEKEGTEAAMGRMREEAAAAVAEEREKTAAAVSKAQEELSRALQVEREKREEAVSAAMGEATRAKTRVQALEREVADADRRIASAQEQLSGKLAQREKETEALRAKLEEVLATKYTWRVLSGDFSAFSGRMAALTQAKARCGISWAAREGKRRGEEAGRMLQPHVEAARMALGSQCREMEKRIQPLWTAHVLPPYREHVEPRLAQAAAYLGPVWEGEVRPRLLQGWEWGKRGAGRARAWGQAQWLAVKRRAVIWVRGQDWAAGLDAERVVTSLEYVLVATLFFLLRHLLWRLVMTALGLVVGLITLPFRILFWIFFWPVLLFGGKRKAKMEVEGPQRGGAGKAGGGGGKGRGAPGGPPPTHPLAHAQHGR 621
            MVPWRRHCELIYLTSAKRLCFFALFLLLAWPPLVHADAAAAVNHGSTSGLENKKEAYRSDPAHLIVPTGHDTKYDKVDELTNLLQQKVAALVNAEKAITSLENQLNIASKQLETTAQSLSASDRETSRLTQEVKELTHKLDAAEASAVAATAQATVAVDTATAAAKKETAAWIARAEKAEAGMDVAVTEATRLKAETQALQASVAAGKGLEGQWSEEKARMEKELAIVREEKDQAVAGLERAAAEAKARVEEEKEGTEAAMGRMREEAAAAVAEEREKTAAAVSKAQEELSRALQVEREKREEAVSAAMGEATRAKTRVQALEREVADADRRIASAQEQLSGKLAQREKETEALRAKLEEVLATKYTWRVLSGDFSAFSGRMAALTQAKARCGISWAAREGKRRGEEAGRMLQPHVEAARMALGSQCREMEKRIQPLWTAHVLPPYREHVEPRLAQAAAYLGPVWEGEVRPRLLQGWEWGKRGAGRARAWGQAQWLAVKRRAVIWVRGQDWAAGLDAERVVTSLEYVLVATLFFLLRHLLWRLVMTALGLVVGLITLPFRILFWIFFWPVLLFGGKRKAKMEVEGPQRGGAGKAGGGGGKGRGAPGGPPPTHPLAHAQHGR
Sbjct:    1 MVPWRRHCELIYLTSAKRLCFFALFLLLAWPPLVHADAAAAVNHGSTSGLENKKEAYRSDPAHLIVPTGHDTKYDKVDELTNLLQQKVAALVNAEKAITSLENQLNIASKQLETTAQSLSASDRETSRLTQEVKELTHKLDAAEASAVAATAQATVAVDTATAAAKKETAAWIARAEKAEAGMDVAVTEATRLKAETQALQASVAAGKGLEGQWSEEKARMEKELAIVREEKDQAVAGLERAAAEAKARVEEEKEGTEAAMGRMREEAAAAVAEEREKTAAAVSKAQEELSRALQVEREKREEAVSAAMGEATRAKTRVQALEREVADADRRIASAQEQLSGKLAQREKETEALRAKLEEVLATKYTWRVLSGDFSAFSGRMAALTQAKARCGISWAAREGKRRGEEAGRMLQPHVEAARMALGSQCREMEKRIQPLWTAHVLPPYREHVEPRLAQAAAYLGPVWEGEVRPRLLQGWEWGKRGAGRARAWGQAQWLAVKRRAVIWVRGQDWAAGLDAERVVTSLEYVLVATLFFLLRHLLWRLVMTALGLVVGLITLPFRILFWIFFWPVLLFGGKRKAKMEVEGPQRGGAGKAGGGGGKGRGAPGGPPPTHPLAHAQHGR 621
[Close]
BLAST of EWM23347.1 vs. NCBI_GenBank
Match: gi|553180071|ref|XP_005853340.1| (hypothetical protein NGA_0721600 [Nannochloropsis gaditana CCMP526] >gi|422295719|gb|EKU23018.1| hypothetical protein NGA_0721600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1199.5 bits (3102), Expect = 0.000e+0
Identity = 608/621 (97.91%), Postives = 610/621 (98.23%), Query Frame = 0 
Query:    1 MVPWRRHCELIYLTSAKRLCFFALFLLLAWPPLVHADAAAAVNHGSTSGLENKKEAYRSDPAHLIVPTGHDTKYDKVDELTNLLQQKVAALVNAEKAITSLENQLNIASKQLETTAQSLSASDRETSRLTQEVKELTHKLDAAEASAVAATAQATVAVDTATAAAKKETAAWIARAEKAEAGMDVAVTEATRLKAETQALQASVAAGKGLEGQWSEEKARMEKELAIVREEKDQAVAGLERAAAEAKARVEEEKEGTEAAMGRMREEAAAAVAEEREKTAAAVSKAQEELSRALQVEREKREEAVSAAMGEATRAKTRVQALEREVADADRRIASAQEQLSGKLAQREKETEALRAKLEEVLATKYTWRVLSGDFSAFSGRMAALTQAKARCGISWAAREGKRRGEEAGRMLQPHVEAARMALGSQCREMEKRIQPLWTAHVLPPYREHVEPRLAQAAAYLGPVWEGEVRPRLLQGWEWGKRGAGRARAWGQAQWLAVKRRAVIWVRGQDWAAGLDAERVVTSLEYVLVATLFFLLRHLLWRLVMTALGLVVGLITLPFRILFWIFFWPVLLFGGKRKAKMEVEGPQRGGAGKAGGGGGKGRGAPGGPPPTHPLAHAQHGR 621
            MVPWRRHCELIYLTSAKRLCFFALFLLL WPPLVHADAAAAVNHGSTSGLENKKEAYRSDPAHLIVPTGHDTKYDKVDELTNLLQQKVAALVNAEKAITSLENQLNIASKQLETTAQSLSASDRETSRLTQEVKELTHKLDAAEASAVAATAQATVAVDTATAAAKKETAAWIARAEKAEAGMDVAVTEATRLKAETQALQASVAAGKGLEGQWSEEKARMEKELAIVREEKDQAVAGLERAAAEAKARVEEEKEGTEAAMGRMREEAAAAVAEEREKTAAAVSKAQEELSRALQVEREKREEAVSAAMGEATRAKTRVQALEREVADADRRIASAQEQLSGKLAQREKETEALRAKLEEVLATKYTWRVLSGDFSAF GRMAALTQAKARCGISWAAREGKRRGEEAGRMLQPHVEAARMALGSQCREMEKRIQPLWTAHVLPPYREHVEPRLAQAAAYLGPVWEGEVRPRLLQGWEWGKRG G        +WLAVKRRAVIWVRGQDWAAGLDAERVVTSLEYVLVATLFFLLRHLLWRLVMTALGLVVGLITLPFRILFWIFFWPVLLFGGKRKAKME+EGPQRGGAGKAGGGGGKGRGAPGGPPPTHPLAHAQHGR
Sbjct:    1 MVPWRRHCELIYLTSAKRLCFFALFLLLTWPPLVHADAAAAVNHGSTSGLENKKEAYRSDPAHLIVPTGHDTKYDKVDELTNLLQQKVAALVNAEKAITSLENQLNIASKQLETTAQSLSASDRETSRLTQEVKELTHKLDAAEASAVAATAQATVAVDTATAAAKKETAAWIARAEKAEAGMDVAVTEATRLKAETQALQASVAAGKGLEGQWSEEKARMEKELAIVREEKDQAVAGLERAAAEAKARVEEEKEGTEAAMGRMREEAAAAVAEEREKTAAAVSKAQEELSRALQVEREKREEAVSAAMGEATRAKTRVQALEREVADADRRIASAQEQLSGKLAQREKETEALRAKLEEVLATKYTWRVLSGDFSAFCGRMAALTQAKARCGISWAAREGKRRGEEAGRMLQPHVEAARMALGSQCREMEKRIQPLWTAHVLPPYREHVEPRLAQAAAYLGPVWEGEVRPRLLQGWEWGKRGRGAREHGAGREWLAVKRRAVIWVRGQDWAAGLDAERVVTSLEYVLVATLFFLLRHLLWRLVMTALGLVVGLITLPFRILFWIFFWPVLLFGGKRKAKMEIEGPQRGGAGKAGGGGGKGRGAPGGPPPTHPLAHAQHGR 621
The following BLAST results are available for this feature:
BLAST of EWM23347.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104355|gb|EWM23347.1|0.000e+0100.00hypothetical protein Naga_100057g32 [Nannochlorops... [more]
gi|553180071|ref|XP_005853340.1|0.000e+097.91hypothetical protein NGA_0721600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7318rna7318Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications