EWM23380.1, cds7294 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|553180379|ref|XP_005853393.1| (heat shock protein, mitochondrial [Nannochloropsis gaditana CCMP526] >gi|422295665|gb|EKU22964.1| heat shock protein, mitochondrial [Nannochloropsis gaditana CCMP526] >gi|585104389|gb|EWM23380.1| chaperonin cpn10 [Nannochloropsis gaditana]) HSP 1 Score: 390.578 bits (1002), Expect = 1.823e-137 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0 Query: 1 MVQPATKLRSFLHLLPSCMQYLLVVVVLILSLGPAKAFIPLLPHMPLQHHKYLAGGPDVVRMAVQDSSTLVSLPHDEYINTLPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRIGPTKGKE 191 MVQPATKLRSFLHLLPSCMQYLLVVVVLILSLGPAKAFIPLLPHMPLQHHKYLAGGPDVVRMAVQDSSTLVSLPHDEYINTLPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRIGPTKGKE Sbjct: 1 MVQPATKLRSFLHLLPSCMQYLLVVVVLILSLGPAKAFIPLLPHMPLQHHKYLAGGPDVVRMAVQDSSTLVSLPHDEYINTLPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRIGPTKGKE 191
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|298710983|emb|CBJ32290.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 94.3597 bits (233), Expect = 1.913e-21 Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 0 Query: 82 LPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRI 184 LP QA+ KA + + VERL + GLFLP+ +H+ ++VSIG+G GESG +T + + GD+ +VK P+GIGPRD+ + G+KFSF+R + + I Sbjct: 7 LPTQAQRQKALYDMVYVERLPEEQQMTSGLFLPAKANPRMHVCKVVSIGNGREGESGNVTPNDAVKQGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVI 109
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|397633375|gb|EJK70949.1| (hypothetical protein THAOC_07652 [Thalassiosira oceanica]) HSP 1 Score: 85.5001 bits (210), Expect = 3.767e-18 Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 0 Query: 93 WQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENW-EGRKFSFIRSHDVLS 182 + +LVERL+ +T+ GLF+P + LH+ R++S+G G E+GM+ + N+ PG + K PWGIGP+DE +GRK SF+RS D+ + Sbjct: 24 YDMVLVERLQDRPDTESGLFVPRENLPALHLCRVISMGPGREEENGMVAPMPNISPGSIVIAKNPWGIGPKDEETPDGRKLSFMRSQDIAA 114
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|1210518697|dbj|GAX22573.1| (hypothetical protein FisN_14Hh201 [Fistulifera solaris]) HSP 1 Score: 79.7221 bits (195), Expect = 1.343e-15 Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 0 Query: 90 KAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRD-ENWEGRKFSFIRSHDVLSRI 184 + + LVER++ + GLFLP+ D LH+ R++++G G E+G++ + ++ GD+ K PWGIGP+D E +GRK+SF+RS D+ + I Sbjct: 49 ECHYDMFLVERIQGRPKLDSGLFLPNEDLPRLHLCRVIAMGPGREEENGLVAPMPDVKIGDIVVAKNPWGIGPKDEETTDGRKYSFMRSQDLAAVI 144
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|1210530737|dbj|GAX10688.1| (hypothetical protein FisN_14Lh201 [Fistulifera solaris]) HSP 1 Score: 79.7221 bits (195), Expect = 1.582e-15 Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 0 Query: 90 KAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRD-ENWEGRKFSFIRSHDVLSRI 184 + + LVER++ + GLFLP+ D LH+ R++++G G E+G++ + ++ GD+ K PWGIGP+D E +GRK+SF+RS D+ + I Sbjct: 51 ECHYDMFLVERIQGRPKLDSGLFLPNEDLPRLHLCRVIAMGPGREEENGLVAPMPDVKIGDIVVAKNPWGIGPKDEETTDGRKYSFMRSQDLAAVI 146
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|219117443|ref|XP_002179516.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409407|gb|EEC49339.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 77.7962 bits (190), Expect = 7.657e-15 Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 0 Query: 85 QARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRD-ENWEGRKFSFIRSHDVLS 182 + + + + +LVER++ T+ GLF+P D LH+ +++S+G G E+G ++ + + GD+ K PWGIGP+D E +G+K SF+RS D+ + Sbjct: 47 KENAWQCHYDMVLVERVQGKPPTESGLFVPQEDLPKLHLCKVLSVGPGREEENGRVSPMPEIRVGDIVIAKNPWGIGPKDEETADGKKLSFMRSQDIAA 145
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|1072226411|gb|OEU11154.1| (hypothetical protein FRACYDRAFT_246265 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 73.559 bits (179), Expect = 3.813e-13 Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 0 Query: 79 INTLPEQARSMKAEWQYLLVERLE---APTET-QGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLT-TIENLGPGDVAYVKQPWGIGPRDENW-EGRKFSFIRSHDVLSRI 184 I+ +A + + +LVER++ P + + LF+P LH+ RI+S+G+G E+G + ++NL GD+ Y K PWGIGP+DE +G K SFIR+ DV ++I Sbjct: 53 IDEYSGKAGTWNCHYDMVLVERIQKRKGPADVDENSLFVPDDQLPRLHLCRILSVGNGREEENGSVAPDLDNLKVGDMIYSKHPWGIGPKDEELADGTKLSFIRTIDVAAKI 164
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|223993447|ref|XP_002286407.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977722|gb|EED96048.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 69.707 bits (169), Expect = 1.090e-11 Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 90 KAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRD-ENWEGRKFSFIRSHDVLS 182 + ++ +LVERL+ +T+ GLF+P + LH+ + G E+GM+ + N+ GDV K PWGIGP+D E +G+K SF+R D+ + Sbjct: 73 ECKYDMILVERLQDRPKTESGLFVPRENLPKLHLCK------GREEENGMIAPMPNVNVGDVVIAKNPWGIGPKDEETADGKKLSFMRGADIAA 160 The following BLAST results are available for this feature:
BLAST of EWM23380.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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