EWM23380.1, cds7294 (CDS) Nannochloropsis gaditana

Overview
NameEWM23380.1
Unique Namecds7294
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:302494..302748 -
Alignment locationCM002471.1:302058..302378 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23380.1
Productchaperonin cpn10
Orig transcript idgnl|cribi|Naga_100472g5.10262.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:302494..302748 -
CM002471.1supercontigCM002471.1:302058..302378 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR011032GroES-like
IPR020818Chaperonin_Cpn10
Homology
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|553180379|ref|XP_005853393.1| (heat shock protein, mitochondrial [Nannochloropsis gaditana CCMP526] >gi|422295665|gb|EKU22964.1| heat shock protein, mitochondrial [Nannochloropsis gaditana CCMP526] >gi|585104389|gb|EWM23380.1| chaperonin cpn10 [Nannochloropsis gaditana])

HSP 1 Score: 390.578 bits (1002), Expect = 1.823e-137
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MVQPATKLRSFLHLLPSCMQYLLVVVVLILSLGPAKAFIPLLPHMPLQHHKYLAGGPDVVRMAVQDSSTLVSLPHDEYINTLPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRIGPTKGKE 191
            MVQPATKLRSFLHLLPSCMQYLLVVVVLILSLGPAKAFIPLLPHMPLQHHKYLAGGPDVVRMAVQDSSTLVSLPHDEYINTLPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRIGPTKGKE
Sbjct:    1 MVQPATKLRSFLHLLPSCMQYLLVVVVLILSLGPAKAFIPLLPHMPLQHHKYLAGGPDVVRMAVQDSSTLVSLPHDEYINTLPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRIGPTKGKE 191          
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|298710983|emb|CBJ32290.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.3597 bits (233), Expect = 1.913e-21
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   82 LPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRI 184
            LP QA+  KA +  + VERL    +   GLFLP+     +H+ ++VSIG+G  GESG +T  + +  GD+ +VK P+GIGPRD+ + G+KFSF+R   + + I
Sbjct:    7 LPTQAQRQKALYDMVYVERLPEEQQMTSGLFLPAKANPRMHVCKVVSIGNGREGESGNVTPNDAVKQGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVI 109          
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|397633375|gb|EJK70949.1| (hypothetical protein THAOC_07652 [Thalassiosira oceanica])

HSP 1 Score: 85.5001 bits (210), Expect = 3.767e-18
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 0
Query:   93 WQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENW-EGRKFSFIRSHDVLS 182
            +  +LVERL+   +T+ GLF+P  +   LH+ R++S+G G   E+GM+  + N+ PG +   K PWGIGP+DE   +GRK SF+RS D+ +
Sbjct:   24 YDMVLVERLQDRPDTESGLFVPRENLPALHLCRVISMGPGREEENGMVAPMPNISPGSIVIAKNPWGIGPKDEETPDGRKLSFMRSQDIAA 114          
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|1210518697|dbj|GAX22573.1| (hypothetical protein FisN_14Hh201 [Fistulifera solaris])

HSP 1 Score: 79.7221 bits (195), Expect = 1.343e-15
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 0
Query:   90 KAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRD-ENWEGRKFSFIRSHDVLSRI 184
            +  +   LVER++   +   GLFLP+ D   LH+ R++++G G   E+G++  + ++  GD+   K PWGIGP+D E  +GRK+SF+RS D+ + I
Sbjct:   49 ECHYDMFLVERIQGRPKLDSGLFLPNEDLPRLHLCRVIAMGPGREEENGLVAPMPDVKIGDIVVAKNPWGIGPKDEETTDGRKYSFMRSQDLAAVI 144          
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|1210530737|dbj|GAX10688.1| (hypothetical protein FisN_14Lh201 [Fistulifera solaris])

HSP 1 Score: 79.7221 bits (195), Expect = 1.582e-15
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 0
Query:   90 KAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRD-ENWEGRKFSFIRSHDVLSRI 184
            +  +   LVER++   +   GLFLP+ D   LH+ R++++G G   E+G++  + ++  GD+   K PWGIGP+D E  +GRK+SF+RS D+ + I
Sbjct:   51 ECHYDMFLVERIQGRPKLDSGLFLPNEDLPRLHLCRVIAMGPGREEENGLVAPMPDVKIGDIVVAKNPWGIGPKDEETTDGRKYSFMRSQDLAAVI 146          
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|219117443|ref|XP_002179516.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409407|gb|EEC49339.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.7962 bits (190), Expect = 7.657e-15
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 0
Query:   85 QARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRD-ENWEGRKFSFIRSHDVLS 182
            +  + +  +  +LVER++    T+ GLF+P  D   LH+ +++S+G G   E+G ++ +  +  GD+   K PWGIGP+D E  +G+K SF+RS D+ +
Sbjct:   47 KENAWQCHYDMVLVERVQGKPPTESGLFVPQEDLPKLHLCKVLSVGPGREEENGRVSPMPEIRVGDIVIAKNPWGIGPKDEETADGKKLSFMRSQDIAA 145          
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|1072226411|gb|OEU11154.1| (hypothetical protein FRACYDRAFT_246265 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.559 bits (179), Expect = 3.813e-13
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 0
Query:   79 INTLPEQARSMKAEWQYLLVERLE---APTET-QGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLT-TIENLGPGDVAYVKQPWGIGPRDENW-EGRKFSFIRSHDVLSRI 184
            I+    +A +    +  +LVER++    P +  +  LF+P      LH+ RI+S+G+G   E+G +   ++NL  GD+ Y K PWGIGP+DE   +G K SFIR+ DV ++I
Sbjct:   53 IDEYSGKAGTWNCHYDMVLVERIQKRKGPADVDENSLFVPDDQLPRLHLCRILSVGNGREEENGSVAPDLDNLKVGDMIYSKHPWGIGPKDEELADGTKLSFIRTIDVAAKI 164          
BLAST of EWM23380.1 vs. NCBI_GenBank
Match: gi|223993447|ref|XP_002286407.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977722|gb|EED96048.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 69.707 bits (169), Expect = 1.090e-11
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 0
Query:   90 KAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRD-ENWEGRKFSFIRSHDVLS 182
            + ++  +LVERL+   +T+ GLF+P  +   LH+ +      G   E+GM+  + N+  GDV   K PWGIGP+D E  +G+K SF+R  D+ +
Sbjct:   73 ECKYDMILVERLQDRPKTESGLFVPRENLPKLHLCK------GREEENGMIAPMPNVNVGDVVIAKNPWGIGPKDEETADGKKLSFMRGADIAA 160          
The following BLAST results are available for this feature:
BLAST of EWM23380.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|553180379|ref|XP_005853393.1|1.823e-137100.00heat shock protein, mitochondrial [Nannochloropsis... [more]
gi|298710983|emb|CBJ32290.1|1.913e-2142.72conserved unknown protein [Ectocarpus siliculosus][more]
gi|397633375|gb|EJK70949.1|3.767e-1842.86hypothetical protein THAOC_07652 [Thalassiosira oc... [more]
gi|1210518697|dbj|GAX22573.1|1.343e-1538.54hypothetical protein FisN_14Hh201 [Fistulifera sol... [more]
gi|1210530737|dbj|GAX10688.1|1.582e-1538.54hypothetical protein FisN_14Lh201 [Fistulifera sol... [more]
gi|219117443|ref|XP_002179516.1|7.657e-1535.35predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072226411|gb|OEU11154.1|3.813e-1337.50hypothetical protein FRACYDRAFT_246265 [Fragilario... [more]
gi|223993447|ref|XP_002286407.1|1.090e-1137.23predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7311rna7311Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications