EWM23376.1, cds7293 (CDS) Nannochloropsis gaditana

Overview
NameEWM23376.1
Unique Namecds7293
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:301303..301363 +
Alignment locationCM002471.1:301613..301800 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23376.1
ProductAnaphase-promoting complex, subunit CDC26
Orig transcript idgnl|cribi|Naga_100472g6.10258.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:301303..301363 +
CM002471.1supercontigCM002471.1:301613..301800 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0030071regulation of mitotic metaphase/anaphase transition
GO:0031145anaphase-promoting complex-dependent catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005680anaphase-promoting complex
Vocabulary: INTERPRO
TermDefinition
IPR018860APC_suCDC26
Homology
[Close]
BLAST of EWM23376.1 vs. NCBI_GenBank
Match: gi|553180382|ref|XP_005853394.1| (hypothetical protein NGA_0384502 [Nannochloropsis gaditana CCMP526] >gi|422295666|gb|EKU22965.1| hypothetical protein NGA_0384502 [Nannochloropsis gaditana CCMP526] >gi|585104385|gb|EWM23376.1| Anaphase-promoting complex, subunit CDC26 [Nannochloropsis gaditana])

HSP 1 Score: 162.925 bits (411), Expect = 7.377e-51
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 
Query:    1 MLRRPPTRIELKPEDVEELEAIQERRRVERQHQLLHKAGTAGASAPLSNMADNNGGEPPGVRDVKTERPRTPTVAERIGLRK 82
            MLRRPPTRIELKPEDVEELEAIQERRRVERQHQLLHKAGTAGASAPLSNMADNNGGEPPGVRDVKTERPRTPTVAERIGLRK
Sbjct:    1 MLRRPPTRIELKPEDVEELEAIQERRRVERQHQLLHKAGTAGASAPLSNMADNNGGEPPGVRDVKTERPRTPTVAERIGLRK 82
The following BLAST results are available for this feature:
BLAST of EWM23376.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553180382|ref|XP_005853394.1|7.377e-51100.00hypothetical protein NGA_0384502 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7310rna7310Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications