EWM23384.1, cds7290 (CDS) Nannochloropsis gaditana

Overview
NameEWM23384.1
Unique Namecds7290
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:295626..295758 +
Alignment locationCM002471.1:295859..296040 +
Alignment locationCM002471.1:296138..296743 +

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Properties
Property NameValue
Protein idEWM23384.1
Productcortactin-binding protein 2
Orig transcript idgnl|cribi|Naga_101268g1.7023.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:295626..295758 +
CM002471.1supercontigCM002471.1:295859..296040 +
CM002471.1supercontigCM002471.1:296138..296743 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR001202WW_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of EWM23384.1 vs. NCBI_GenBank
Match: gi|585104395|gb|EWM23384.1| (cortactin-binding protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 612.838 bits (1579), Expect = 0.000e+0
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0 
Query:    1 MDLFIELGLLVGLASLLLVVSSINATLVTLSLLLGCLLLLAGVLEPFEIPWYVWAALCLYLAVRHQGSGYTKGSLCKAAADGNIALVRKLLAVNHGQYALELDHKGYSPLMHAARRGDLPMVRLLLATNLYDAHNVSIKSRSGKSALFLAAQAKQEAMVRLLLEHGADPAGLARDSWAQRFLPFLTAPPASQRPIPAGPQPRRRARRPPPPDYPDVHPGPQPSSWQASSCSPPKAIPVAVALPPSAPPASTFAHASVSPGIVREGGGETLLPAGWEERITAEGHVFYVDHGGRRTSWERPVSGVDM 306
            MDLFIELGLLVGLASLLLVVSSINATLVTLSLLLGCLLLLAGVLEPFEIPWYVWAALCLYLAVRHQGSGYTKGSLCKAAADGNIALVRKLLAVNHGQYALELDHKGYSPLMHAARRGDLPMVRLLLATNLYDAHNVSIKSRSGKSALFLAAQAKQEAMVRLLLEHGADPAGLARDSWAQRFLPFLTAPPASQRPIPAGPQPRRRARRPPPPDYPDVHPGPQPSSWQASSCSPPKAIPVAVALPPSAPPASTFAHASVSPGIVREGGGETLLPAGWEERITAEGHVFYVDHGGRRTSWERPVSGVDM
Sbjct:    1 MDLFIELGLLVGLASLLLVVSSINATLVTLSLLLGCLLLLAGVLEPFEIPWYVWAALCLYLAVRHQGSGYTKGSLCKAAADGNIALVRKLLAVNHGQYALELDHKGYSPLMHAARRGDLPMVRLLLATNLYDAHNVSIKSRSGKSALFLAAQAKQEAMVRLLLEHGADPAGLARDSWAQRFLPFLTAPPASQRPIPAGPQPRRRARRPPPPDYPDVHPGPQPSSWQASSCSPPKAIPVAVALPPSAPPASTFAHASVSPGIVREGGGETLLPAGWEERITAEGHVFYVDHGGRRTSWERPVSGVDM 306
[Close]
BLAST of EWM23384.1 vs. NCBI_GenBank
Match: gi|553180386|ref|XP_005853395.1| (ankyrin repeat-containing protein [Nannochloropsis gaditana CCMP526] >gi|422295667|gb|EKU22966.1| ankyrin repeat-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.05 bits (362), Expect = 7.938e-40
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0 
Query:   72 KGSLCKAAADGNIALVRKLLAVNHGQYALELDHKGYSPLMHAARRGDLPMVRLLLATNLYDAHNVSIKSRSGKSA 146
            +GSLCKAAADGNIALVRKLLAVNHGQYALELD KGYSPLMHAARRGDLPMVRLLLATNLYDAHNVSIKSRSG ++
Sbjct:    9 RGSLCKAAADGNIALVRKLLAVNHGQYALELDRKGYSPLMHAARRGDLPMVRLLLATNLYDAHNVSIKSRSGNTS 83
The following BLAST results are available for this feature:
BLAST of EWM23384.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104395|gb|EWM23384.1|0.000e+0100.00cortactin-binding protein 2 [Nannochloropsis gadit... [more]
gi|553180386|ref|XP_005853395.1|7.938e-4093.33ankyrin repeat-containing protein [Nannochloropsis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7307rna7307Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications